Wall clock time and date at job start Mon Mar 30 2020 02:10:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 N 1.46500 * 109.47021 * 2 1 4 4 C 1.46495 * 119.99732 * 269.99586 * 3 2 1 5 5 C 1.52999 * 109.47850 * 270.00238 * 4 3 2 6 6 C 1.37467 * 119.99727 * 90.00547 * 3 2 1 7 7 N 1.31947 * 125.35591 * 359.97438 * 6 3 2 8 8 C 1.32897 * 110.02254 * 180.02562 * 7 6 3 9 9 C 1.39641 * 107.79672 * 359.97438 * 8 7 6 10 10 C 1.39915 * 126.97280 * 180.02562 * 9 8 7 11 11 H 1.08004 * 120.00298 * 179.97438 * 10 9 8 12 12 C 1.39910 * 120.00065 * 359.97438 * 10 9 8 13 13 N 1.30996 * 120.00125 * 359.97438 * 12 10 9 14 14 Si 1.86808 * 120.00135 * 179.97438 * 12 10 9 15 15 H 1.48496 * 109.46702 * 59.99755 * 14 12 10 16 16 H 1.48497 * 109.47035 * 179.97438 * 14 12 10 17 17 H 1.48497 * 109.46785 * 300.00176 * 14 12 10 18 18 N 1.36265 * 125.34808 * 179.97438 * 6 3 2 19 19 H 0.96999 * 126.57967 * 359.73524 * 18 6 3 20 20 H 1.09006 * 109.46876 * 300.00174 * 1 2 3 21 21 H 1.09010 * 109.47042 * 59.99596 * 1 2 3 22 22 H 1.08994 * 109.47510 * 179.97438 * 1 2 3 23 23 H 1.09001 * 109.46438 * 239.99992 * 2 1 3 24 24 H 1.08996 * 109.46788 * 120.00472 * 2 1 3 25 25 H 1.09005 * 109.47249 * 30.00993 * 4 3 2 26 26 H 1.09008 * 109.46857 * 150.00688 * 4 3 2 27 27 H 1.08997 * 109.47483 * 180.02562 * 5 4 3 28 28 H 1.09000 * 109.46875 * 300.00551 * 5 4 3 29 29 H 1.09008 * 109.46523 * 60.00246 * 5 4 3 30 30 H 1.08002 * 126.10203 * 179.97438 * 8 7 6 31 31 H 0.97001 * 120.00019 * 180.02562 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2626 2.0717 -1.2687 5 6 3.7075 1.8314 -1.7105 6 6 2.2476 2.0292 1.1905 7 7 2.0638 1.5105 2.3898 8 6 2.3785 2.4017 3.3241 9 6 2.7920 3.5689 2.6786 10 6 3.2134 4.7594 3.2808 11 1 3.5110 5.5982 2.6690 12 6 3.2493 4.8633 4.6755 13 7 2.8879 3.8462 5.4177 14 14 3.8126 6.4526 5.4796 15 1 2.9204 7.5629 5.0598 16 1 3.7590 6.3063 6.9563 17 1 5.2057 6.7521 5.0615 18 7 2.7002 3.3081 1.3176 19 1 2.9200 3.9179 0.5960 20 1 -0.3633 0.5139 0.8900 21 1 -0.3634 0.5139 -0.8900 22 1 -0.3634 -1.0276 -0.0005 23 1 1.8933 -0.5139 -0.8900 24 1 1.8933 -0.5139 0.8899 25 1 1.5817 1.6877 -2.0284 26 1 2.0957 3.1410 -1.1384 27 1 3.8893 2.3455 -2.6542 28 1 4.3884 2.2155 -0.9508 29 1 3.8745 0.7621 -1.8408 30 1 2.3242 2.2502 4.3920 31 1 2.9124 3.9184 6.3847 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259689060.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:10:11 Heat of formation + Delta-G solvation = 34.995359 kcal Electronic energy + Delta-G solvation = -13798.173753 eV Core-core repulsion = 11500.575386 eV Total energy + Delta-G solvation = -2297.598367 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 209.122 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -41.67189 -37.93021 -35.33462 -33.43057 -32.19430 -30.84777 -29.15136 -26.08091 -24.41629 -23.04771 -21.63989 -20.62475 -19.32654 -17.92391 -16.83704 -16.45393 -15.60138 -15.39541 -14.67858 -14.51094 -14.42986 -13.90515 -13.73019 -13.32605 -12.93246 -12.86946 -12.77914 -12.62222 -12.45285 -11.99763 -11.85063 -11.76101 -11.27323 -10.36738 -10.08086 -9.90311 -8.41492 -8.16209 -5.97264 1.37549 1.42749 1.56392 2.00146 2.08173 2.30229 2.92081 3.18873 3.47448 4.03982 4.25795 4.33684 4.53781 4.59851 4.68484 4.77479 4.87656 5.00871 5.10749 5.14013 5.22046 5.33065 5.45431 5.55132 5.75546 5.93158 6.40879 6.47479 6.66658 7.02887 7.13916 7.62591 8.14708 8.56284 Molecular weight = 209.12amu Principal moments of inertia in cm(-1) A = 0.050532 B = 0.008176 C = 0.007332 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 553.972729 B = 3423.822770 C = 3818.096553 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.146 3.854 3 N -0.609 5.609 4 C 0.127 3.873 5 C -0.164 4.164 6 C 0.388 3.612 7 N -0.558 5.558 8 C -0.162 4.162 9 C 0.133 3.867 10 C -0.474 4.474 11 H 0.075 0.925 12 C 0.019 3.981 13 N -0.843 5.843 14 Si 1.003 2.997 15 H -0.262 1.262 16 H -0.271 1.271 17 H -0.261 1.261 18 N -0.619 5.619 19 H 0.406 0.594 20 H 0.021 0.979 21 H 0.062 0.938 22 H 0.079 0.921 23 H 0.097 0.903 24 H 0.049 0.951 25 H 0.103 0.897 26 H 0.054 0.946 27 H 0.087 0.913 28 H 0.026 0.974 29 H 0.061 0.939 30 H 0.161 0.839 31 H 0.281 0.719 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.444 -1.319 -11.720 11.802 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.023 3.977 3 N -0.336 5.336 4 C 0.003 3.997 5 C -0.223 4.223 6 C 0.040 3.960 7 N -0.287 5.287 8 C -0.306 4.306 9 C 0.022 3.978 10 C -0.509 4.509 11 H 0.094 0.906 12 C -0.192 4.192 13 N -0.473 5.473 14 Si 0.824 3.176 15 H -0.186 1.186 16 H -0.196 1.196 17 H -0.186 1.186 18 N -0.238 5.238 19 H 0.243 0.757 20 H 0.040 0.960 21 H 0.081 0.919 22 H 0.098 0.902 23 H 0.116 0.884 24 H 0.067 0.933 25 H 0.121 0.879 26 H 0.073 0.927 27 H 0.106 0.894 28 H 0.045 0.955 29 H 0.080 0.920 30 H 0.177 0.823 31 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -0.788 -2.282 -11.307 11.562 hybrid contribution 0.587 1.647 0.284 1.771 sum -0.201 -0.635 -11.024 11.044 Atomic orbital electron populations 1.22097 0.96554 1.02139 1.00750 1.21148 0.93877 0.80683 1.02017 1.44957 1.75326 1.13772 0.99519 1.21399 0.97277 0.96440 0.84539 1.22215 0.96381 1.02522 1.01172 1.19259 1.05373 0.82820 0.88590 1.69566 1.28300 1.33500 0.97326 1.22920 1.18474 0.91276 0.97883 1.18961 1.01836 0.97025 0.79953 1.18557 1.42464 0.97340 0.92545 0.90630 1.26642 0.93838 1.01624 0.97075 1.69797 1.38371 1.32274 1.06812 0.84937 0.79242 0.76442 0.76985 1.18608 1.19576 1.18594 1.42909 1.60406 1.12943 1.07503 0.75659 0.95968 0.91880 0.90197 0.88447 0.93284 0.87886 0.92742 0.89418 0.95480 0.92007 0.82258 0.90813 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.43 10.24 71.98 0.74 -3.69 16 2 C 0.15 4.53 6.24 86.38 0.54 5.06 16 3 N -0.61 -21.95 2.55 -708.74 -1.80 -23.76 16 4 C 0.13 3.31 6.18 86.38 0.53 3.85 16 5 C -0.16 -3.84 10.24 71.98 0.74 -3.10 16 6 C 0.39 18.75 8.27 260.44 2.15 20.90 16 7 N -0.56 -31.58 10.44 -195.09 -2.04 -33.62 16 8 C -0.16 -9.97 10.86 84.87 0.92 -9.05 16 9 C 0.13 7.71 6.96 38.77 0.27 7.98 16 10 C -0.47 -26.49 9.44 23.08 0.22 -26.27 16 11 H 0.08 3.90 7.85 -2.91 -0.02 3.88 16 12 C 0.02 1.03 5.50 85.22 0.47 1.50 16 13 N -0.84 -47.50 10.33 21.83 0.23 -47.28 16 14 Si 1.00 40.12 29.56 68.60 2.03 42.15 16 15 H -0.26 -10.04 7.11 99.48 0.71 -9.33 16 16 H -0.27 -10.38 7.11 99.48 0.71 -9.67 16 17 H -0.26 -10.03 7.11 99.48 0.71 -9.33 16 18 N -0.62 -30.21 6.02 -188.59 -1.13 -31.35 16 19 H 0.41 16.77 7.87 -92.71 -0.73 16.04 16 20 H 0.02 0.79 8.14 -2.38 -0.02 0.77 16 21 H 0.06 1.53 8.14 -2.38 -0.02 1.51 16 22 H 0.08 1.82 8.14 -2.39 -0.02 1.80 16 23 H 0.10 2.23 8.07 -2.39 -0.02 2.21 16 24 H 0.05 1.82 7.61 -2.39 -0.02 1.80 16 25 H 0.10 2.02 8.07 -2.38 -0.02 2.00 16 26 H 0.05 1.47 6.99 -2.38 -0.02 1.45 16 27 H 0.09 1.52 8.14 -2.39 -0.02 1.50 16 28 H 0.03 0.78 8.14 -2.39 -0.02 0.76 16 29 H 0.06 1.37 8.14 -2.38 -0.02 1.35 16 30 H 0.16 10.42 5.74 -2.91 -0.02 10.40 16 31 H 0.28 14.43 8.30 -92.71 -0.77 13.66 16 Total: -1.00 -70.12 263.50 4.25 -65.87 By element: Atomic # 1 Polarization: 30.42 SS G_CDS: 0.39 Total: 30.81 kcal Atomic # 6 Polarization: -9.40 SS G_CDS: 6.58 Total: -2.82 kcal Atomic # 7 Polarization: -131.26 SS G_CDS: -4.75 Total: -136.01 kcal Atomic # 14 Polarization: 40.12 SS G_CDS: 2.03 Total: 42.15 kcal Total: -70.12 4.25 -65.87 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259689060.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.866 kcal (2) G-P(sol) polarization free energy of solvation -70.121 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.746 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.250 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.871 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.995 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds