Wall clock time and date at job start Mon Mar 30 2020 02:50:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86801 * 120.00378 * 2 1 4 4 H 1.48502 * 109.47149 * 180.02562 * 3 2 1 5 5 H 1.48502 * 109.47136 * 300.00055 * 3 2 1 6 6 H 1.48496 * 109.46998 * 59.99854 * 3 2 1 7 7 C 1.37878 * 119.99857 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00165 * 179.97438 * 7 2 1 9 9 C 1.50704 * 119.99715 * 0.02562 * 7 2 1 10 10 H 1.08997 * 110.05419 * 306.99788 * 9 7 2 11 11 C 1.54260 * 110.03566 * 68.42529 * 9 7 2 12 12 C 1.54887 * 104.19774 * 142.89658 * 11 9 7 13 13 C 1.54963 * 102.77431 * 322.07755 * 12 11 9 14 14 C 1.53883 * 110.02963 * 185.59079 * 9 7 2 15 15 H 1.08997 * 110.03142 * 121.38279 * 14 9 7 16 16 N 1.46899 * 110.03276 * 359.97438 * 14 9 7 17 17 C 1.47893 * 111.00057 * 75.49591 * 16 14 9 18 18 C 1.53995 * 107.05912 * 145.84467 * 17 16 14 19 19 C 1.54597 * 105.22637 * 358.72512 * 18 17 16 20 20 C 1.48529 * 111.00049 * 192.89511 * 16 14 9 21 21 H 0.97006 * 119.99438 * 359.97438 * 1 2 3 22 22 H 1.09004 * 110.48487 * 261.57173 * 11 9 7 23 23 H 1.08999 * 110.48641 * 24.21149 * 11 9 7 24 24 H 1.08997 * 110.75809 * 80.36830 * 12 11 9 25 25 H 1.09005 * 110.75530 * 203.55899 * 12 11 9 26 26 H 1.08997 * 110.48078 * 279.23306 * 13 12 11 27 27 H 1.09002 * 110.52505 * 156.57019 * 13 12 11 28 28 H 1.08994 * 109.92220 * 26.48719 * 17 16 14 29 29 H 1.09008 * 110.08426 * 265.28493 * 17 16 14 30 30 H 1.09003 * 110.31052 * 117.68702 * 18 17 16 31 31 H 1.09001 * 110.30878 * 239.75797 * 18 17 16 32 32 H 1.09004 * 110.72474 * 96.44594 * 19 18 17 33 33 H 1.08994 * 110.72368 * 219.73740 * 19 18 17 34 34 H 1.09009 * 110.66614 * 318.71223 * 20 16 14 35 35 H 1.09002 * 110.67294 * 81.67224 * 20 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3462 -0.0006 5 1 1.8905 2.3964 -1.2125 6 1 1.8905 2.3964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0844 -1.1941 0.0001 9 6 1.2509 -2.4992 0.0005 10 1 0.5300 -2.5145 0.8180 11 6 0.5256 -2.6906 -1.3474 12 6 0.6445 -4.2088 -1.6305 13 6 2.0709 -4.5410 -1.1243 14 6 2.2333 -3.6751 0.1420 15 1 1.9896 -4.2606 1.0285 16 7 3.6104 -3.1720 0.2339 17 6 3.8776 -2.6003 1.5714 18 6 5.3509 -2.9002 1.9048 19 6 5.8862 -3.7001 0.6950 20 6 4.5920 -4.2732 0.0607 21 1 -0.4849 0.8401 0.0004 22 1 -0.5213 -2.3994 -1.2621 23 1 1.0195 -2.1165 -2.1313 24 1 -0.1041 -4.7665 -1.0677 25 1 0.5533 -4.4111 -2.6977 26 1 2.8146 -4.2664 -1.8723 27 1 2.1514 -5.5993 -0.8757 28 1 3.2272 -3.0665 2.3114 29 1 3.7119 -1.5230 1.5580 30 1 5.9092 -1.9712 2.0210 31 1 5.4190 -3.4980 2.8137 32 1 6.4000 -3.0420 -0.0057 33 1 6.5445 -4.5037 1.0248 34 1 4.2665 -5.1662 0.5944 35 1 4.7425 -4.4918 -0.9965 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259765028.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:50:45 Heat of formation + Delta-G solvation = 2.101565 kcal Electronic energy + Delta-G solvation = -14741.705476 eV Core-core repulsion = 12546.221071 eV Total energy + Delta-G solvation = -2195.484405 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 209.148 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -38.84578 -35.95637 -32.33127 -30.68108 -28.86808 -27.36442 -25.75896 -23.85112 -21.03529 -20.44508 -19.13761 -18.43718 -16.55128 -15.50355 -14.69070 -14.59864 -14.08604 -13.39460 -13.24278 -12.40663 -12.21850 -12.13266 -11.71002 -11.38310 -10.93391 -10.84064 -10.66471 -10.47615 -10.34987 -10.11999 -10.01166 -9.88933 -9.67439 -9.47129 -9.02340 -8.45953 -8.19892 -7.37119 -5.81691 -3.77142 3.39895 3.48477 3.53239 4.59839 4.79568 5.19175 5.21718 5.42928 5.48889 5.72533 5.74810 5.80672 5.92215 5.98962 6.18981 6.21142 6.25740 6.31951 6.43126 6.45573 6.60541 6.62969 6.77425 6.84799 6.97767 7.05139 7.24594 7.47829 7.67732 7.81538 8.01107 8.12300 8.23894 8.76722 9.32865 9.84391 11.30073 Molecular weight = 209.15amu Principal moments of inertia in cm(-1) A = 0.024590 B = 0.014825 C = 0.010056 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1138.388651 B = 1888.305681 C = 2783.621722 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.051 3.949 3 Si 0.882 3.118 4 H -0.272 1.272 5 H -0.289 1.289 6 H -0.290 1.290 7 C -0.490 4.490 8 H 0.091 0.909 9 C 0.051 3.949 10 H 0.026 0.974 11 C -0.092 4.092 12 C -0.131 4.131 13 C -0.114 4.114 14 C 0.079 3.921 15 H 0.019 0.981 16 N -0.480 5.480 17 C 0.042 3.958 18 C -0.135 4.135 19 C -0.122 4.122 20 C 0.028 3.972 21 H 0.253 0.747 22 H 0.051 0.949 23 H 0.053 0.947 24 H 0.050 0.950 25 H 0.048 0.952 26 H 0.068 0.932 27 H 0.041 0.959 28 H 0.032 0.968 29 H 0.100 0.900 30 H 0.064 0.936 31 H 0.055 0.945 32 H 0.070 0.930 33 H 0.059 0.941 34 H 0.029 0.971 35 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.115 -7.584 0.794 10.429 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.542 5.542 2 C -0.148 4.148 3 Si 0.711 3.289 4 H -0.197 1.197 5 H -0.215 1.215 6 H -0.216 1.216 7 C -0.529 4.529 8 H 0.109 0.891 9 C 0.032 3.968 10 H 0.044 0.956 11 C -0.131 4.131 12 C -0.169 4.169 13 C -0.152 4.152 14 C -0.029 4.029 15 H 0.037 0.963 16 N -0.204 5.204 17 C -0.086 4.086 18 C -0.173 4.173 19 C -0.160 4.160 20 C -0.100 4.100 21 H 0.063 0.937 22 H 0.070 0.930 23 H 0.072 0.928 24 H 0.069 0.931 25 H 0.066 0.934 26 H 0.087 0.913 27 H 0.060 0.940 28 H 0.051 0.949 29 H 0.118 0.882 30 H 0.083 0.917 31 H 0.074 0.926 32 H 0.088 0.912 33 H 0.078 0.922 34 H 0.048 0.952 35 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 7.017 -7.063 0.399 9.964 hybrid contribution 0.165 0.313 0.648 0.738 sum 7.182 -6.750 1.047 9.912 Atomic orbital electron populations 1.70006 1.05900 1.25732 1.52536 1.25052 0.94673 0.98836 0.96239 0.86692 0.80423 0.84657 0.77146 1.19689 1.21527 1.21626 1.21697 0.94761 0.89105 1.47335 0.89113 1.19296 0.91867 0.92098 0.93531 0.95557 1.22298 1.00228 0.90728 0.99808 1.22579 0.95694 0.99899 0.98706 1.22420 0.97892 0.96819 0.98028 1.22633 0.89333 0.96340 0.94613 0.96284 1.64919 1.02593 1.24998 1.27911 1.22971 0.92960 1.03212 0.89425 1.22481 0.97520 0.99845 0.97443 1.22462 0.97059 0.98968 0.97500 1.23263 0.92862 0.93785 1.00093 0.93687 0.93003 0.92814 0.93139 0.93364 0.91323 0.93985 0.94945 0.88215 0.91694 0.92627 0.91164 0.92224 0.95232 0.90916 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.46 12.84 55.43 0.71 -25.75 16 2 C 0.05 1.43 5.36 -17.82 -0.10 1.34 16 3 Si 0.88 21.74 29.54 -169.99 -5.02 16.72 16 4 H -0.27 -6.58 7.11 56.52 0.40 -6.18 16 5 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 6 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 7 C -0.49 -13.19 6.60 -34.44 -0.23 -13.42 16 8 H 0.09 2.42 4.56 -52.49 -0.24 2.19 16 9 C 0.05 1.27 2.65 -90.65 -0.24 1.03 16 10 H 0.03 0.73 8.14 -51.93 -0.42 0.31 16 11 C -0.09 -2.19 5.75 -25.08 -0.14 -2.33 16 12 C -0.13 -2.52 6.91 -24.70 -0.17 -2.69 16 13 C -0.11 -2.12 5.43 -25.03 -0.14 -2.26 16 14 C 0.08 1.67 2.51 -66.59 -0.17 1.50 16 15 H 0.02 0.40 7.72 -51.93 -0.40 0.00 16 16 N -0.48 -9.65 3.60 -221.06 -0.80 -10.45 16 17 C 0.04 0.81 5.51 -2.76 -0.02 0.79 16 18 C -0.13 -2.07 6.92 -25.37 -0.18 -2.24 16 19 C -0.12 -1.76 7.08 -24.78 -0.18 -1.93 16 20 C 0.03 0.46 5.48 -1.81 -0.01 0.45 16 21 H 0.25 7.17 8.31 -40.82 -0.34 6.84 16 22 H 0.05 1.30 8.14 -51.93 -0.42 0.88 16 23 H 0.05 1.36 7.85 -51.93 -0.41 0.95 16 24 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 25 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 26 H 0.07 1.29 7.24 -51.93 -0.38 0.91 16 27 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 28 H 0.03 0.63 7.51 -51.93 -0.39 0.24 16 29 H 0.10 2.16 6.04 -51.92 -0.31 1.85 16 30 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 31 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 32 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 33 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 34 H 0.03 0.47 8.02 -51.92 -0.42 0.05 16 35 H 0.07 1.15 7.41 -51.93 -0.38 0.76 16 LS Contribution 265.44 15.07 4.00 4.00 Total: -1.00 -28.48 265.44 -8.53 -37.01 By element: Atomic # 1 Polarization: 4.07 SS G_CDS: -5.87 Total: -1.79 kcal Atomic # 6 Polarization: -18.19 SS G_CDS: -1.56 Total: -19.75 kcal Atomic # 7 Polarization: -36.11 SS G_CDS: -0.08 Total: -36.19 kcal Atomic # 14 Polarization: 21.74 SS G_CDS: -5.02 Total: 16.72 kcal Total LS contribution 4.00 Total: 4.00 kcal Total: -28.48 -8.53 -37.01 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259765028.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.116 kcal (2) G-P(sol) polarization free energy of solvation -28.484 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.633 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.531 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.015 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.102 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds