Wall clock time and date at job start Mon Mar 30 2020 02:50:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86801 * 120.00378 * 2 1 4 4 H 1.48502 * 109.47149 * 180.02562 * 3 2 1 5 5 H 1.48502 * 109.47136 * 300.00055 * 3 2 1 6 6 H 1.48496 * 109.46998 * 59.99854 * 3 2 1 7 7 C 1.37878 * 119.99857 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00165 * 179.97438 * 7 2 1 9 9 C 1.50704 * 119.99715 * 0.02562 * 7 2 1 10 10 H 1.08997 * 110.05419 * 306.99788 * 9 7 2 11 11 C 1.54260 * 110.03566 * 68.42529 * 9 7 2 12 12 C 1.54887 * 104.19774 * 142.89658 * 11 9 7 13 13 C 1.54963 * 102.77431 * 322.07755 * 12 11 9 14 14 C 1.53883 * 110.02963 * 185.59079 * 9 7 2 15 15 H 1.08997 * 110.03142 * 121.38279 * 14 9 7 16 16 N 1.46899 * 110.03276 * 359.97438 * 14 9 7 17 17 C 1.47893 * 111.00057 * 75.49591 * 16 14 9 18 18 C 1.53995 * 107.05912 * 145.84467 * 17 16 14 19 19 C 1.54597 * 105.22637 * 358.72512 * 18 17 16 20 20 C 1.48529 * 111.00049 * 192.89511 * 16 14 9 21 21 H 0.97006 * 119.99438 * 359.97438 * 1 2 3 22 22 H 1.09004 * 110.48487 * 261.57173 * 11 9 7 23 23 H 1.08999 * 110.48641 * 24.21149 * 11 9 7 24 24 H 1.08997 * 110.75809 * 80.36830 * 12 11 9 25 25 H 1.09005 * 110.75530 * 203.55899 * 12 11 9 26 26 H 1.08997 * 110.48078 * 279.23306 * 13 12 11 27 27 H 1.09002 * 110.52505 * 156.57019 * 13 12 11 28 28 H 1.08994 * 109.92220 * 26.48719 * 17 16 14 29 29 H 1.09008 * 110.08426 * 265.28493 * 17 16 14 30 30 H 1.09003 * 110.31052 * 117.68702 * 18 17 16 31 31 H 1.09001 * 110.30878 * 239.75797 * 18 17 16 32 32 H 1.09004 * 110.72474 * 96.44594 * 19 18 17 33 33 H 1.08994 * 110.72368 * 219.73740 * 19 18 17 34 34 H 1.09009 * 110.66614 * 318.71223 * 20 16 14 35 35 H 1.09002 * 110.67294 * 81.67224 * 20 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3462 -0.0006 5 1 1.8905 2.3964 -1.2125 6 1 1.8905 2.3964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0844 -1.1941 0.0001 9 6 1.2509 -2.4992 0.0005 10 1 0.5300 -2.5145 0.8180 11 6 0.5256 -2.6906 -1.3474 12 6 0.6445 -4.2088 -1.6305 13 6 2.0709 -4.5410 -1.1243 14 6 2.2333 -3.6751 0.1420 15 1 1.9896 -4.2606 1.0285 16 7 3.6104 -3.1720 0.2339 17 6 3.8776 -2.6003 1.5714 18 6 5.3509 -2.9002 1.9048 19 6 5.8862 -3.7001 0.6950 20 6 4.5920 -4.2732 0.0607 21 1 -0.4849 0.8401 0.0004 22 1 -0.5213 -2.3994 -1.2621 23 1 1.0195 -2.1165 -2.1313 24 1 -0.1041 -4.7665 -1.0677 25 1 0.5533 -4.4111 -2.6977 26 1 2.8146 -4.2664 -1.8723 27 1 2.1514 -5.5993 -0.8757 28 1 3.2272 -3.0665 2.3114 29 1 3.7119 -1.5230 1.5580 30 1 5.9092 -1.9712 2.0210 31 1 5.4190 -3.4980 2.8137 32 1 6.4000 -3.0420 -0.0057 33 1 6.5445 -4.5037 1.0248 34 1 4.2665 -5.1662 0.5944 35 1 4.7425 -4.4918 -0.9965 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259765028.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:50:44 Heat of formation + Delta-G solvation = -14.331442 kcal Electronic energy + Delta-G solvation = -14742.418065 eV Core-core repulsion = 12546.221071 eV Total energy + Delta-G solvation = -2196.196994 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 209.148 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.39501 -37.53829 -34.40295 -32.13026 -30.53431 -28.96921 -27.38140 -25.85384 -22.41902 -21.95604 -20.66026 -20.24425 -18.42313 -17.06084 -16.44000 -16.25357 -15.88577 -14.95046 -14.75302 -14.25133 -13.68375 -13.67338 -13.33815 -13.04927 -12.84951 -12.44311 -12.27045 -12.03680 -11.87742 -11.67718 -11.51537 -11.46938 -11.39415 -11.22460 -10.91772 -10.49739 -10.34515 -8.92974 -7.97744 -5.97410 1.40836 1.43837 1.55160 2.52708 3.33784 3.35037 3.87942 3.93728 4.09211 4.19305 4.23485 4.36545 4.51322 4.64402 4.76525 4.90030 4.94261 4.96878 5.01203 5.07116 5.10614 5.13545 5.23467 5.31215 5.38422 5.41030 5.49312 5.61598 5.76873 5.95718 6.04071 6.37149 6.44113 6.75302 7.18478 7.67008 9.14092 Molecular weight = 209.15amu Principal moments of inertia in cm(-1) A = 0.024590 B = 0.014825 C = 0.010056 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1138.388651 B = 1888.305681 C = 2783.621722 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.937 5.937 2 C -0.005 4.005 3 Si 0.942 3.058 4 H -0.262 1.262 5 H -0.290 1.290 6 H -0.289 1.289 7 C -0.486 4.486 8 H 0.094 0.906 9 C 0.041 3.959 10 H -0.015 1.015 11 C -0.088 4.088 12 C -0.120 4.120 13 C -0.103 4.103 14 C 0.084 3.916 15 H 0.016 0.984 16 N -0.504 5.504 17 C 0.040 3.960 18 C -0.128 4.128 19 C -0.114 4.114 20 C 0.028 3.972 21 H 0.250 0.750 22 H 0.023 0.977 23 H 0.031 0.969 24 H 0.061 0.939 25 H 0.072 0.928 26 H 0.070 0.930 27 H 0.075 0.925 28 H 0.021 0.979 29 H 0.065 0.935 30 H 0.070 0.930 31 H 0.075 0.925 32 H 0.069 0.931 33 H 0.091 0.909 34 H 0.040 0.960 35 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.343 -9.200 0.441 13.119 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.200 4.200 3 Si 0.769 3.231 4 H -0.186 1.186 5 H -0.217 1.217 6 H -0.216 1.216 7 C -0.524 4.524 8 H 0.111 0.889 9 C 0.022 3.978 10 H 0.003 0.997 11 C -0.126 4.126 12 C -0.158 4.158 13 C -0.140 4.140 14 C -0.025 4.025 15 H 0.034 0.966 16 N -0.228 5.228 17 C -0.088 4.088 18 C -0.166 4.166 19 C -0.152 4.152 20 C -0.100 4.100 21 H 0.059 0.941 22 H 0.042 0.958 23 H 0.050 0.950 24 H 0.080 0.920 25 H 0.091 0.909 26 H 0.089 0.911 27 H 0.093 0.907 28 H 0.039 0.961 29 H 0.083 0.917 30 H 0.089 0.911 31 H 0.094 0.906 32 H 0.088 0.912 33 H 0.110 0.890 34 H 0.058 0.942 35 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 9.271 -8.688 0.046 12.706 hybrid contribution -0.546 0.803 0.792 1.253 sum 8.725 -7.886 0.837 11.790 Atomic orbital electron populations 1.70151 1.07317 1.26123 1.54416 1.25786 0.95391 1.02125 0.96693 0.85740 0.79669 0.80882 0.76790 1.18633 1.21686 1.21572 1.22024 0.95016 0.90008 1.45387 0.88860 1.19295 0.92202 0.93567 0.92717 0.99729 1.22088 0.97898 0.94267 0.98377 1.22512 0.96762 0.95928 1.00589 1.22361 0.97096 0.98116 0.96453 1.22443 0.89301 0.94759 0.95993 0.96570 1.64761 1.02604 1.27126 1.28283 1.22866 0.95827 1.00944 0.89191 1.22438 0.94413 1.00849 0.98901 1.22469 0.96462 0.99621 0.96633 1.23349 0.92552 0.92957 1.01103 0.94069 0.95772 0.94988 0.91985 0.90898 0.91097 0.90673 0.96109 0.91669 0.91102 0.90599 0.91234 0.89008 0.94170 0.89983 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.30 12.84 21.45 0.28 -57.02 16 2 C 0.00 -0.27 5.36 84.66 0.45 0.19 16 3 Si 0.94 45.71 29.54 68.60 2.03 47.74 16 4 H -0.26 -12.16 7.11 99.48 0.71 -11.46 16 5 H -0.29 -14.07 7.11 99.48 0.71 -13.37 16 6 H -0.29 -13.91 7.11 99.48 0.71 -13.21 16 7 C -0.49 -26.81 6.60 25.60 0.17 -26.65 16 8 H 0.09 5.05 4.56 -2.91 -0.01 5.04 16 9 C 0.04 2.11 2.65 -10.81 -0.03 2.08 16 10 H -0.02 -0.91 8.14 -2.39 -0.02 -0.93 16 11 C -0.09 -4.26 5.75 31.67 0.18 -4.07 16 12 C -0.12 -4.40 6.91 31.91 0.22 -4.18 16 13 C -0.10 -3.54 5.43 31.69 0.17 -3.36 16 14 C 0.08 3.48 2.51 45.64 0.11 3.59 16 15 H 0.02 0.68 7.72 -2.39 -0.02 0.66 16 16 N -0.50 -19.56 3.60 -853.30 -3.07 -22.64 16 17 C 0.04 1.51 5.51 86.45 0.48 1.99 16 18 C -0.13 -3.59 6.92 31.47 0.22 -3.37 16 19 C -0.11 -2.84 7.08 31.86 0.23 -2.62 16 20 C 0.03 0.82 5.48 86.71 0.48 1.29 16 21 H 0.25 14.74 8.31 -92.70 -0.77 13.97 16 22 H 0.02 1.25 8.14 -2.38 -0.02 1.23 16 23 H 0.03 1.64 7.85 -2.39 -0.02 1.62 16 24 H 0.06 2.14 8.14 -2.39 -0.02 2.12 16 25 H 0.07 2.33 8.14 -2.38 -0.02 2.31 16 26 H 0.07 2.43 7.24 -2.39 -0.02 2.41 16 27 H 0.07 2.14 8.14 -2.39 -0.02 2.12 16 28 H 0.02 0.81 7.51 -2.39 -0.02 0.79 16 29 H 0.06 2.88 6.04 -2.38 -0.01 2.87 16 30 H 0.07 1.90 8.14 -2.39 -0.02 1.88 16 31 H 0.08 1.83 8.14 -2.39 -0.02 1.81 16 32 H 0.07 1.76 8.14 -2.38 -0.02 1.74 16 33 H 0.09 1.75 8.14 -2.39 -0.02 1.73 16 34 H 0.04 1.11 8.02 -2.38 -0.02 1.09 16 35 H 0.08 2.27 7.41 -2.39 -0.02 2.25 16 Total: -1.00 -63.28 265.44 2.94 -60.33 By element: Atomic # 1 Polarization: 5.66 SS G_CDS: 1.04 Total: 6.70 kcal Atomic # 6 Polarization: -37.79 SS G_CDS: 2.68 Total: -35.11 kcal Atomic # 7 Polarization: -76.86 SS G_CDS: -2.80 Total: -79.66 kcal Atomic # 14 Polarization: 45.71 SS G_CDS: 2.03 Total: 47.74 kcal Total: -63.28 2.94 -60.33 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259765028.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.003 kcal (2) G-P(sol) polarization free energy of solvation -63.278 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.276 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.944 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.334 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.331 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds