Wall clock time and date at job start Mon Mar 30 2020 02:38:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86803 * 120.00099 * 2 1 4 4 H 1.48501 * 109.46877 * 0.02562 * 3 2 1 5 5 H 1.48497 * 109.47156 * 239.99840 * 3 2 1 6 6 H 1.48500 * 109.46630 * 119.99932 * 3 2 1 7 7 C 1.37880 * 120.00068 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99963 * 179.97438 * 7 2 1 9 9 C 1.50698 * 120.00032 * 0.02562 * 7 2 1 10 10 C 1.53004 * 109.47405 * 180.02562 * 9 7 2 11 11 N 1.46898 * 109.47155 * 179.97438 * 10 9 7 12 12 C 1.47703 * 111.00236 * 81.87192 * 11 10 9 13 13 C 1.52944 * 86.96807 * 140.15007 * 12 11 10 14 14 H 1.09003 * 111.46302 * 83.76594 * 13 12 11 15 15 C 1.50484 * 115.95290 * 213.33886 * 13 12 11 16 16 C 1.51632 * 114.44182 * 66.28291 * 15 13 12 17 17 C 1.52619 * 111.01538 * 46.74464 * 16 15 13 18 18 C 1.52981 * 108.76905 * 296.07181 * 17 16 15 19 19 C 1.48159 * 110.99585 * 177.30550 * 11 10 9 20 20 H 1.09004 * 113.85057 * 104.20384 * 19 11 10 21 21 H 0.97001 * 120.00081 * 179.97438 * 1 2 3 22 22 H 1.08999 * 109.47004 * 299.99478 * 9 7 2 23 23 H 1.09000 * 109.47702 * 59.99782 * 9 7 2 24 24 H 1.08999 * 109.46596 * 299.99707 * 10 9 7 25 25 H 1.09000 * 109.46885 * 59.99262 * 10 9 7 26 26 H 1.08998 * 113.63338 * 254.67597 * 12 11 10 27 27 H 1.09008 * 113.62893 * 25.62633 * 12 11 10 28 28 H 1.08998 * 108.48897 * 305.00096 * 15 13 12 29 29 H 1.09004 * 108.48819 * 187.56738 * 15 13 12 30 30 H 1.08993 * 109.17118 * 286.34672 * 16 15 13 31 31 H 1.09005 * 109.16499 * 167.13371 * 16 15 13 32 32 H 1.09008 * 109.58433 * 176.28916 * 17 16 15 33 33 H 1.08994 * 109.70917 * 55.93376 * 17 16 15 34 34 H 1.09007 * 109.51277 * 303.73866 * 18 17 16 35 35 H 1.09002 * 109.51592 * 183.58326 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 1.2841 2.7464 0.0006 5 1 3.1029 1.6964 -1.2124 6 1 3.1029 1.6963 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1940 0.0001 9 6 1.2511 -2.4992 0.0005 10 6 2.2453 -3.6621 0.0018 11 7 1.5108 -4.9343 0.0024 12 6 1.0778 -5.2963 -1.3625 13 6 1.4445 -6.7384 -1.0089 14 1 0.6339 -7.2372 -0.4776 15 6 1.9761 -7.5787 -2.1385 16 6 3.3214 -7.1299 -2.6751 17 6 4.3003 -6.8543 -1.5371 18 6 3.7712 -5.6847 -0.7050 19 6 2.4419 -6.0850 -0.0613 20 1 2.5678 -6.6033 0.8893 21 1 -0.4850 -0.8400 -0.0004 22 1 0.6241 -2.5567 0.8903 23 1 0.6247 -2.5572 -0.8896 24 1 2.8725 -3.6048 -0.8877 25 1 2.8713 -3.6039 0.8922 26 1 0.0124 -5.1465 -1.5371 27 1 1.7010 -4.8666 -2.1469 28 1 1.2539 -7.5574 -2.9546 29 1 2.0686 -8.6074 -1.7901 30 1 3.1878 -6.2202 -3.2605 31 1 3.7293 -7.9109 -3.3168 32 1 5.2764 -6.5978 -1.9489 33 1 4.3906 -7.7394 -0.9075 34 1 3.6174 -4.8193 -1.3498 35 1 4.4924 -5.4360 0.0735 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306855242.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:38:33 Heat of formation + Delta-G solvation = 15.764484 kcal Electronic energy + Delta-G solvation = -14225.521940 eV Core-core repulsion = 12030.630003 eV Total energy + Delta-G solvation = -2194.891937 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 209.148 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -41.06911 -35.32564 -33.55872 -31.73024 -30.08925 -26.90348 -25.51278 -23.90876 -22.46904 -21.34549 -19.95060 -17.57402 -16.74964 -16.21468 -15.14070 -14.90880 -14.24347 -13.84141 -13.65638 -13.42792 -12.58878 -12.49928 -12.42912 -11.75103 -11.55925 -11.24084 -11.16137 -10.89729 -10.71769 -10.55721 -10.10975 -10.00285 -9.93269 -9.67194 -9.57414 -8.52191 -8.30447 -8.19167 -6.32717 -4.01363 3.44984 3.47520 3.66213 4.37359 4.51080 4.59795 4.72374 4.99789 5.11020 5.21329 5.31112 5.41976 5.45509 5.56568 5.69484 5.71653 5.84960 5.90844 5.97395 6.02521 6.08791 6.14449 6.17458 6.26611 6.33328 6.38265 6.63070 6.77277 7.01559 7.35359 7.56664 7.75201 8.27140 8.50036 8.92275 9.71434 11.08325 Molecular weight = 209.15amu Principal moments of inertia in cm(-1) A = 0.053597 B = 0.006997 C = 0.006629 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 522.290228 B = 4000.596746 C = 4223.086096 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.913 5.913 2 C 0.015 3.985 3 Si 1.069 2.931 4 H -0.282 1.282 5 H -0.289 1.289 6 H -0.288 1.288 7 C -0.604 4.604 8 H 0.047 0.953 9 C 0.018 3.982 10 C 0.030 3.970 11 N -0.472 5.472 12 C 0.004 3.996 13 C -0.108 4.108 14 H 0.092 0.908 15 C -0.104 4.104 16 C -0.118 4.118 17 C -0.113 4.113 18 C -0.140 4.140 19 C 0.031 3.969 20 H 0.086 0.914 21 H 0.270 0.730 22 H 0.013 0.987 23 H 0.005 0.995 24 H 0.041 0.959 25 H 0.061 0.939 26 H 0.076 0.924 27 H 0.066 0.934 28 H 0.062 0.938 29 H 0.057 0.943 30 H 0.059 0.941 31 H 0.060 0.940 32 H 0.060 0.940 33 H 0.061 0.939 34 H 0.080 0.920 35 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.388 -14.575 -4.233 16.467 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.549 5.549 2 C -0.189 4.189 3 Si 0.897 3.103 4 H -0.207 1.207 5 H -0.215 1.215 6 H -0.214 1.214 7 C -0.642 4.642 8 H 0.065 0.935 9 C -0.019 4.019 10 C -0.098 4.098 11 N -0.193 5.193 12 C -0.125 4.125 13 C -0.127 4.127 14 H 0.110 0.890 15 C -0.142 4.142 16 C -0.155 4.155 17 C -0.151 4.151 18 C -0.178 4.178 19 C -0.078 4.078 20 H 0.104 0.896 21 H 0.080 0.920 22 H 0.031 0.969 23 H 0.023 0.977 24 H 0.059 0.941 25 H 0.079 0.921 26 H 0.095 0.905 27 H 0.084 0.916 28 H 0.081 0.919 29 H 0.076 0.924 30 H 0.078 0.922 31 H 0.079 0.921 32 H 0.079 0.921 33 H 0.080 0.920 34 H 0.098 0.902 35 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 5.692 -12.805 -3.652 14.481 hybrid contribution 0.831 -1.571 -0.557 1.863 sum 6.522 -14.376 -4.208 16.338 Atomic orbital electron populations 1.70760 1.06877 1.30702 1.46544 1.25838 0.96566 1.02645 0.93827 0.83551 0.74888 0.75392 0.76460 1.20719 1.21512 1.21444 1.22023 0.94169 0.92120 1.55932 0.93499 1.19109 0.94532 0.91940 0.96329 1.22781 0.97323 0.89889 0.99810 1.69447 1.24820 1.02279 1.22718 1.23756 1.01688 0.94399 0.92687 1.21858 0.98731 0.95413 0.96653 0.89000 1.20525 0.96762 0.99149 0.97720 1.21168 0.95263 1.01265 0.97831 1.21347 0.98133 0.98464 0.97123 1.22058 0.96676 0.99022 1.00086 1.23133 0.91974 0.94470 0.98253 0.89636 0.92003 0.96875 0.97704 0.94128 0.92060 0.90512 0.91559 0.91916 0.92401 0.92197 0.92136 0.92104 0.92036 0.90154 0.91524 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -28.90 13.65 55.43 0.76 -28.15 16 2 C 0.02 0.45 5.46 -17.82 -0.10 0.35 16 3 Si 1.07 25.90 29.90 -169.99 -5.08 20.81 16 4 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 5 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 6 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16 7 C -0.60 -17.84 9.11 -34.44 -0.31 -18.15 16 8 H 0.05 1.35 7.74 -52.49 -0.41 0.94 16 9 C 0.02 0.50 4.48 -27.88 -0.12 0.37 16 10 C 0.03 0.66 3.98 -3.82 -0.02 0.64 16 11 N -0.47 -9.07 6.38 -241.69 -1.54 -10.61 16 12 C 0.00 0.06 6.66 -8.08 -0.05 0.01 16 13 C -0.11 -1.47 4.06 -92.28 -0.37 -1.85 16 14 H 0.09 1.23 8.14 -51.93 -0.42 0.81 16 15 C -0.10 -1.15 5.53 -28.68 -0.16 -1.31 16 16 C -0.12 -1.28 5.63 -27.62 -0.16 -1.43 16 17 C -0.11 -1.27 5.90 -26.94 -0.16 -1.43 16 18 C -0.14 -1.98 4.40 -26.73 -0.12 -2.10 16 19 C 0.03 0.48 4.53 -72.03 -0.33 0.15 16 20 H 0.09 1.26 8.14 -51.93 -0.42 0.84 16 21 H 0.27 8.57 7.22 -40.82 -0.29 8.28 16 22 H 0.01 0.38 8.01 -51.93 -0.42 -0.04 16 23 H 0.00 0.13 7.83 -51.93 -0.41 -0.27 16 24 H 0.04 0.88 5.12 -51.93 -0.27 0.61 16 25 H 0.06 1.37 8.14 -51.93 -0.42 0.95 16 26 H 0.08 1.32 8.14 -51.93 -0.42 0.89 16 27 H 0.07 1.14 6.38 -51.92 -0.33 0.80 16 28 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 29 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 30 H 0.06 0.70 7.79 -51.93 -0.40 0.30 16 31 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 32 H 0.06 0.63 8.14 -51.92 -0.42 0.21 16 33 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 34 H 0.08 1.29 4.63 -51.93 -0.24 1.05 16 35 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 LS Contribution 267.12 15.07 4.03 4.03 Total: -1.00 -31.39 267.12 -9.53 -40.92 By element: Atomic # 1 Polarization: 3.53 SS G_CDS: -5.79 Total: -2.26 kcal Atomic # 6 Polarization: -22.84 SS G_CDS: -1.90 Total: -24.74 kcal Atomic # 7 Polarization: -37.97 SS G_CDS: -0.79 Total: -38.76 kcal Atomic # 14 Polarization: 25.90 SS G_CDS: -5.08 Total: 20.81 kcal Total LS contribution 4.03 Total: 4.03 kcal Total: -31.39 -9.53 -40.92 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306855242.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.685 kcal (2) G-P(sol) polarization free energy of solvation -31.392 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.293 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.528 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.920 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.764 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds