Wall clock time and date at job start Mon Mar 30 2020 02:20:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86803 * 120.00112 * 2 1 4 4 H 1.48500 * 109.46986 * 270.00107 * 3 2 1 5 5 H 1.48496 * 109.47029 * 30.00124 * 3 2 1 6 6 H 1.48499 * 109.47352 * 149.99954 * 3 2 1 7 7 C 1.37885 * 120.00035 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99675 * 179.72276 * 7 2 1 9 9 C 1.50695 * 119.99721 * 0.02562 * 7 2 1 10 10 H 1.09001 * 110.67134 * 56.76777 * 9 7 2 11 11 C 1.54883 * 110.75684 * 293.32682 * 9 7 2 12 12 C 1.54269 * 104.19775 * 203.74509 * 11 9 7 13 13 C 1.53879 * 106.59447 * 23.60948 * 12 11 9 14 14 H 1.09004 * 110.07676 * 240.69280 * 13 12 11 15 15 N 1.46897 * 110.03187 * 119.28741 * 13 12 11 16 16 C 1.46903 * 111.00098 * 87.83011 * 15 13 12 17 17 C 1.53780 * 113.61433 * 254.13618 * 16 15 13 18 18 C 1.53954 * 87.02008 * 220.04801 * 17 16 15 19 19 C 1.53782 * 87.11350 * 25.36719 * 18 17 16 20 20 C 1.54261 * 106.60300 * 0.02562 * 13 12 11 21 21 H 0.97000 * 119.99706 * 359.97438 * 1 2 3 22 22 H 1.09003 * 110.49064 * 322.42160 * 11 9 7 23 23 H 1.08994 * 110.48771 * 85.07023 * 11 9 7 24 24 H 1.08998 * 110.03449 * 264.33218 * 12 11 9 25 25 H 1.08998 * 110.07537 * 142.91343 * 12 11 9 26 26 H 1.00903 * 111.00502 * 211.78464 * 15 13 12 27 27 H 1.08998 * 112.84897 * 25.33948 * 16 15 13 28 28 H 1.08997 * 113.62155 * 334.56550 * 17 16 15 29 29 H 1.09000 * 113.61569 * 105.47653 * 17 16 15 30 30 H 1.09000 * 113.53889 * 270.81156 * 18 17 16 31 31 H 1.09005 * 113.74520 * 139.94610 * 18 17 16 32 32 H 1.08996 * 113.61372 * 220.09619 * 19 18 17 33 33 H 1.08993 * 113.61550 * 89.18254 * 19 18 17 34 34 H 1.08997 * 110.49047 * 217.71174 * 20 13 12 35 35 H 1.09004 * 110.48714 * 95.06276 * 20 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4467 2.6526 0.7000 6 1 3.5467 1.4402 0.7000 7 6 2.0046 -1.1941 0.0005 8 1 3.0846 -1.1941 -0.0040 9 6 1.2510 -2.4991 0.0005 10 1 0.5750 -2.5531 -0.8528 11 6 0.4794 -2.6874 1.3302 12 6 0.2961 -4.2146 1.4483 13 6 1.4098 -4.8576 0.6032 14 1 0.9742 -5.4600 -0.1939 15 7 2.2678 -5.6935 1.4536 16 6 1.7376 -7.0598 1.5548 17 6 1.0849 -7.3682 2.9126 18 6 1.7454 -8.7561 2.8242 19 6 2.8031 -8.1089 1.9146 20 6 2.2313 -3.6988 0.0016 21 1 -0.4850 0.8401 0.0004 22 1 1.0643 -2.3075 2.1679 23 1 -0.4891 -2.1896 1.2830 24 1 -0.6807 -4.5046 1.0613 25 1 0.3918 -4.5236 2.4892 26 1 3.2181 -5.6986 1.1145 27 1 1.1210 -7.3389 0.7004 28 1 1.4654 -6.7549 3.7295 29 1 -0.0040 -7.3990 2.8768 30 1 1.1300 -9.4996 2.3178 31 1 2.1454 -9.1131 3.7733 32 1 3.0990 -8.7365 1.0740 33 1 3.6540 -7.6983 2.4579 34 1 2.5412 -3.9386 -1.0155 35 1 3.0991 -3.4825 0.6249 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306992328.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:20:41 Heat of formation + Delta-G solvation = -16.255031 kcal Electronic energy + Delta-G solvation = -13928.142991 eV Core-core repulsion = 11731.862583 eV Total energy + Delta-G solvation = -2196.280407 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 209.148 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.12728 -38.49878 -34.96108 -33.09577 -29.89169 -28.23933 -26.48850 -25.65044 -24.32737 -21.27326 -20.66440 -20.03131 -18.41986 -16.81997 -16.71611 -16.49299 -16.28442 -15.39240 -14.60752 -14.04440 -13.96613 -13.68221 -13.23853 -12.99094 -12.80361 -12.66193 -12.47675 -12.17704 -12.09448 -11.65299 -11.52696 -11.37080 -11.23493 -11.10336 -10.80656 -10.79567 -10.44707 -9.27645 -8.10670 -6.20219 1.41390 1.42180 1.52710 2.44565 3.20216 3.33948 3.72599 3.87199 3.99582 4.09205 4.15607 4.17178 4.34769 4.64402 4.76538 4.84808 4.89175 4.98585 5.00189 5.07692 5.15814 5.17639 5.19488 5.28252 5.36333 5.42726 5.47295 5.61770 5.66758 5.90972 6.01025 6.36897 6.40944 6.60130 6.90614 7.47002 8.98717 Molecular weight = 209.15amu Principal moments of inertia in cm(-1) A = 0.072969 B = 0.006312 C = 0.006092 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 383.630289 B = 4434.598336 C = 4595.147835 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C 0.010 3.990 3 Si 0.954 3.046 4 H -0.275 1.275 5 H -0.284 1.284 6 H -0.267 1.267 7 C -0.531 4.531 8 H 0.053 0.947 9 C 0.040 3.960 10 H -0.001 1.001 11 C -0.091 4.091 12 C -0.104 4.104 13 C 0.095 3.905 14 H 0.041 0.959 15 N -0.674 5.674 16 C 0.049 3.951 17 C -0.132 4.132 18 C -0.131 4.131 19 C -0.136 4.136 20 C -0.109 4.109 21 H 0.260 0.740 22 H 0.029 0.971 23 H 0.032 0.968 24 H 0.049 0.951 25 H 0.066 0.934 26 H 0.344 0.656 27 H 0.065 0.935 28 H 0.076 0.924 29 H 0.058 0.942 30 H 0.087 0.913 31 H 0.078 0.922 32 H 0.074 0.926 33 H 0.086 0.914 34 H 0.051 0.949 35 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.734 -14.968 3.652 15.853 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.562 5.562 2 C -0.188 4.188 3 Si 0.780 3.220 4 H -0.200 1.200 5 H -0.210 1.210 6 H -0.192 1.192 7 C -0.569 4.569 8 H 0.071 0.929 9 C 0.021 3.979 10 H 0.017 0.983 11 C -0.130 4.130 12 C -0.142 4.142 13 C -0.015 4.015 14 H 0.059 0.941 15 N -0.306 5.306 16 C -0.061 4.061 17 C -0.170 4.170 18 C -0.169 4.169 19 C -0.174 4.174 20 C -0.147 4.147 21 H 0.068 0.932 22 H 0.048 0.952 23 H 0.050 0.950 24 H 0.067 0.933 25 H 0.084 0.916 26 H 0.163 0.837 27 H 0.083 0.917 28 H 0.094 0.906 29 H 0.077 0.923 30 H 0.106 0.894 31 H 0.096 0.904 32 H 0.093 0.907 33 H 0.105 0.895 34 H 0.070 0.930 35 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 3.303 -14.649 4.231 15.601 hybrid contribution 0.226 0.990 -1.001 1.426 sum 3.529 -13.658 3.230 14.472 Atomic orbital electron populations 1.70098 1.07343 1.27148 1.51601 1.25793 0.95657 1.02520 0.94860 0.85616 0.78772 0.79390 0.78257 1.20024 1.21008 1.19171 1.21526 0.92948 0.92080 1.50338 0.92875 1.19522 0.93022 0.92350 0.92988 0.98268 1.22064 0.98783 0.93704 0.98442 1.22141 0.96828 0.95249 0.99960 1.22098 0.93642 0.93285 0.92440 0.94100 1.60758 1.05449 1.10338 1.54047 1.23255 0.97995 0.87355 0.97522 1.23057 0.99447 0.97053 0.97458 1.22719 0.97836 0.95954 1.00423 1.23132 0.97104 0.96953 1.00163 1.22504 0.98459 0.94940 0.98767 0.93154 0.95165 0.94952 0.93269 0.91552 0.83661 0.91684 0.90564 0.92335 0.89410 0.90376 0.90704 0.89518 0.92977 0.92077 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -55.37 12.41 21.45 0.27 -55.11 16 2 C 0.01 0.58 5.36 84.66 0.45 1.03 16 3 Si 0.95 44.67 29.54 68.60 2.03 46.69 16 4 H -0.27 -12.46 7.11 99.48 0.71 -11.76 16 5 H -0.28 -13.09 7.11 99.48 0.71 -12.38 16 6 H -0.27 -12.10 7.11 99.48 0.71 -11.39 16 7 C -0.53 -30.18 8.49 25.60 0.22 -29.96 16 8 H 0.05 2.95 7.77 -2.91 -0.02 2.93 16 9 C 0.04 2.08 2.73 -10.24 -0.03 2.05 16 10 H 0.00 -0.05 8.14 -2.39 -0.02 -0.07 16 11 C -0.09 -4.52 5.75 31.67 0.18 -4.34 16 12 C -0.10 -4.09 6.55 31.32 0.21 -3.88 16 13 C 0.10 3.39 3.25 45.64 0.15 3.54 16 14 H 0.04 1.40 7.47 -2.38 -0.02 1.39 16 15 N -0.67 -20.03 6.21 -463.06 -2.88 -22.91 16 16 C 0.05 1.18 4.07 45.44 0.18 1.37 16 17 C -0.13 -3.02 7.89 31.18 0.25 -2.77 16 18 C -0.13 -2.28 8.09 31.18 0.25 -2.03 16 19 C -0.14 -2.55 7.67 31.12 0.24 -2.31 16 20 C -0.11 -4.52 5.66 31.68 0.18 -4.34 16 21 H 0.26 14.80 8.31 -92.71 -0.77 14.03 16 22 H 0.03 1.55 8.04 -2.39 -0.02 1.53 16 23 H 0.03 1.74 7.63 -2.39 -0.02 1.72 16 24 H 0.05 1.86 8.14 -2.39 -0.02 1.84 16 25 H 0.07 2.50 7.92 -2.39 -0.02 2.48 16 26 H 0.34 9.44 8.15 -89.69 -0.73 8.71 16 27 H 0.07 1.62 7.49 -2.39 -0.02 1.61 16 28 H 0.08 1.92 8.14 -2.39 -0.02 1.90 16 29 H 0.06 1.34 8.14 -2.39 -0.02 1.32 16 30 H 0.09 1.33 8.14 -2.39 -0.02 1.31 16 31 H 0.08 1.20 8.14 -2.38 -0.02 1.18 16 32 H 0.07 1.23 8.14 -2.39 -0.02 1.21 16 33 H 0.09 1.65 8.14 -2.39 -0.02 1.63 16 34 H 0.05 2.03 8.14 -2.39 -0.02 2.01 16 35 H 0.06 2.55 7.85 -2.38 -0.02 2.53 16 Total: -1.00 -61.25 278.91 2.01 -59.25 By element: Atomic # 1 Polarization: 13.41 SS G_CDS: 0.31 Total: 13.72 kcal Atomic # 6 Polarization: -43.93 SS G_CDS: 2.28 Total: -41.65 kcal Atomic # 7 Polarization: -75.40 SS G_CDS: -2.61 Total: -78.01 kcal Atomic # 14 Polarization: 44.67 SS G_CDS: 2.03 Total: 46.69 kcal Total: -61.25 2.01 -59.25 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306992328.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.991 kcal (2) G-P(sol) polarization free energy of solvation -61.254 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.262 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.007 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.247 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.255 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds