Wall clock time and date at job start Mon Mar 30 2020 02:45:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86806 * 119.99724 * 2 1 4 4 H 1.48504 * 109.46851 * 179.97438 * 3 2 1 5 5 H 1.48497 * 109.46993 * 299.99780 * 3 2 1 6 6 H 1.48500 * 109.46852 * 59.99876 * 3 2 1 7 7 C 1.37871 * 120.00105 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99762 * 180.02562 * 7 2 1 9 9 C 1.50698 * 120.00157 * 0.02562 * 7 2 1 10 10 N 1.46900 * 109.47458 * 180.02562 * 9 7 2 11 11 C 1.46898 * 111.00225 * 180.02562 * 10 9 7 12 12 H 1.08995 * 110.01626 * 326.38858 * 11 10 9 13 13 C 1.53872 * 110.07489 * 87.80718 * 11 10 9 14 14 C 1.54757 * 106.65180 * 119.31523 * 13 11 10 15 15 C 1.54887 * 103.96441 * 23.57130 * 14 13 11 16 16 H 1.09002 * 110.75856 * 80.48162 * 15 14 13 17 17 C 1.53005 * 110.75480 * 203.66881 * 15 14 13 18 18 C 1.52997 * 117.49627 * 244.80666 * 17 15 14 19 19 C 1.53001 * 117.49802 * 176.15014 * 17 15 14 20 20 C 1.54265 * 110.03051 * 204.99708 * 11 10 9 21 21 H 0.97001 * 120.00071 * 0.02562 * 1 2 3 22 22 H 1.08997 * 109.47107 * 60.00034 * 9 7 2 23 23 H 1.08998 * 109.47196 * 300.00084 * 9 7 2 24 24 H 1.00897 * 110.99830 * 56.04376 * 10 9 7 25 25 H 1.08996 * 110.03395 * 238.59434 * 13 11 10 26 26 H 1.09008 * 110.02794 * 359.97438 * 13 11 10 27 27 H 1.08998 * 110.50261 * 265.01092 * 14 13 11 28 28 H 1.09001 * 110.68900 * 142.21812 * 14 13 11 29 29 H 1.08998 * 115.54820 * 30.47981 * 17 15 14 30 30 H 1.09000 * 117.50218 * 0.02562 * 18 17 15 31 31 H 1.09006 * 117.49635 * 145.02168 * 18 17 15 32 32 H 1.08998 * 117.49779 * 214.97803 * 19 17 15 33 33 H 1.09006 * 117.49941 * 359.97438 * 19 17 15 34 34 H 1.09005 * 110.48489 * 98.37726 * 20 11 10 35 35 H 1.08999 * 110.49056 * 335.73611 * 20 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7092 1.3465 0.0006 5 1 1.8904 2.3965 -1.2125 6 1 1.8903 2.3965 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0846 -1.1939 0.0010 9 6 1.2511 -2.4991 0.0005 10 7 2.2057 -3.6157 0.0018 11 6 1.5054 -4.9070 0.0012 12 1 0.5772 -4.8283 0.5671 13 6 1.2067 -5.3452 -1.4432 14 6 1.9393 -6.6911 -1.6589 15 6 2.1032 -7.2609 -0.2280 16 1 1.1809 -7.7357 0.1068 17 6 3.2713 -8.2474 -0.1677 18 6 2.9457 -9.7096 0.1430 19 6 3.6287 -8.8364 1.1984 20 6 2.4076 -5.9976 0.6148 21 1 -0.4850 0.8400 -0.0004 22 1 0.6248 -2.5571 -0.8897 23 1 0.6241 -2.5567 0.8903 24 1 2.8400 -3.5482 0.7836 25 1 0.1334 -5.4791 -1.5784 26 1 1.5809 -4.5993 -2.1446 27 1 2.9141 -6.5260 -2.1178 28 1 1.3377 -7.3634 -2.2706 29 1 4.0894 -8.0501 -0.8604 30 1 1.8993 -9.9690 0.3041 31 1 3.5499 -10.4745 -0.3450 32 1 4.6820 -9.0270 1.4043 33 1 3.0320 -8.5208 2.0543 34 1 2.1472 -6.1645 1.6601 35 1 3.4578 -5.7208 0.5219 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000308192251.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:45:23 Heat of formation + Delta-G solvation = 1.926273 kcal Electronic energy + Delta-G solvation = -13600.613374 eV Core-core repulsion = 11405.121367 eV Total energy + Delta-G solvation = -2195.492007 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 209.148 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -38.84860 -36.39451 -33.73111 -31.91393 -28.32672 -27.75933 -25.21717 -22.42287 -21.83788 -21.62496 -19.60189 -19.12387 -16.37753 -15.82687 -15.48288 -14.68217 -14.44445 -13.98304 -13.32887 -12.88684 -12.54769 -12.19963 -11.72484 -11.55010 -11.34013 -11.24643 -10.92697 -10.78258 -10.66019 -10.52242 -10.37974 -10.15541 -10.00371 -9.89689 -9.58847 -9.07720 -8.45782 -7.22598 -6.00435 -4.02165 3.32602 3.39662 3.45044 3.76556 4.45419 4.59999 4.81280 4.88172 5.04408 5.23387 5.25858 5.35620 5.42189 5.57023 5.67152 5.85233 5.86663 5.91375 5.92431 6.03694 6.05740 6.13991 6.25834 6.37592 6.47766 6.65150 6.68505 6.82717 7.35385 7.47652 7.84141 8.18854 8.47200 8.69199 9.08177 9.62857 11.10783 Molecular weight = 209.15amu Principal moments of inertia in cm(-1) A = 0.068199 B = 0.005510 C = 0.005338 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 410.462321 B = 5080.487123 C = 5244.241224 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.055 3.945 3 Si 0.898 3.102 4 H -0.272 1.272 5 H -0.284 1.284 6 H -0.285 1.285 7 C -0.513 4.513 8 H 0.062 0.938 9 C 0.193 3.807 10 N -0.684 5.684 11 C 0.081 3.919 12 H 0.035 0.965 13 C -0.115 4.115 14 C -0.110 4.110 15 C -0.062 4.062 16 H 0.071 0.929 17 C -0.137 4.137 18 C -0.185 4.185 19 C -0.181 4.181 20 C -0.115 4.115 21 H 0.260 0.740 22 H 0.028 0.972 23 H -0.016 1.016 24 H 0.327 0.673 25 H 0.052 0.948 26 H 0.077 0.923 27 H 0.065 0.935 28 H 0.057 0.943 29 H 0.103 0.897 30 H 0.091 0.909 31 H 0.089 0.911 32 H 0.090 0.910 33 H 0.092 0.908 34 H 0.056 0.944 35 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.475 -15.932 0.274 16.551 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.146 4.146 3 Si 0.726 3.274 4 H -0.197 1.197 5 H -0.210 1.210 6 H -0.211 1.211 7 C -0.551 4.551 8 H 0.080 0.920 9 C 0.066 3.934 10 N -0.314 5.314 11 C -0.030 4.030 12 H 0.053 0.947 13 C -0.153 4.153 14 C -0.148 4.148 15 C -0.080 4.080 16 H 0.089 0.911 17 C -0.155 4.155 18 C -0.222 4.222 19 C -0.218 4.218 20 C -0.153 4.153 21 H 0.070 0.930 22 H 0.046 0.954 23 H 0.002 0.998 24 H 0.144 0.856 25 H 0.071 0.929 26 H 0.096 0.904 27 H 0.084 0.916 28 H 0.076 0.924 29 H 0.121 0.879 30 H 0.110 0.890 31 H 0.108 0.892 32 H 0.109 0.891 33 H 0.111 0.889 34 H 0.075 0.925 35 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 4.397 -15.782 -0.411 16.388 hybrid contribution -0.028 0.924 0.938 1.317 sum 4.368 -14.858 0.527 15.496 Atomic orbital electron populations 1.69980 1.06090 1.26601 1.51169 1.24996 0.94861 0.99355 0.95414 0.86442 0.80085 0.83412 0.77478 1.19654 1.21005 1.21126 1.21255 0.93548 0.90334 1.49989 0.91950 1.19591 0.90655 0.87498 0.95642 1.60828 1.20969 1.01068 1.48571 1.22084 0.95324 0.90463 0.95098 0.94734 1.22272 0.98872 0.96374 0.97773 1.22426 1.00534 0.96348 0.95503 1.21670 0.95748 0.94088 0.96532 0.91082 1.22340 1.00491 0.93822 0.98883 1.23001 1.01322 0.93893 1.03991 1.22913 1.00977 1.04659 0.93295 1.22559 1.00723 0.94044 0.97982 0.93020 0.95429 0.99786 0.85568 0.92921 0.90393 0.91624 0.92410 0.87905 0.89040 0.89247 0.89145 0.88902 0.92544 0.90683 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.31 13.29 55.43 0.74 -26.57 16 2 C 0.05 1.59 5.46 -17.82 -0.10 1.50 16 3 Si 0.90 21.97 29.54 -169.99 -5.02 16.95 16 4 H -0.27 -6.52 7.11 56.52 0.40 -6.12 16 5 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 6 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 7 C -0.51 -14.82 9.32 -34.44 -0.32 -15.14 16 8 H 0.06 1.77 7.81 -52.48 -0.41 1.36 16 9 C 0.19 5.19 5.27 -4.98 -0.03 5.16 16 10 N -0.68 -15.03 6.15 -106.82 -0.66 -15.69 16 11 C 0.08 1.48 3.25 -66.60 -0.22 1.27 16 12 H 0.03 0.68 7.81 -51.93 -0.41 0.28 16 13 C -0.11 -1.94 6.56 -25.35 -0.17 -2.10 16 14 C -0.11 -1.50 6.31 -24.81 -0.16 -1.66 16 15 C -0.06 -0.78 3.05 -88.63 -0.27 -1.05 16 16 H 0.07 0.89 7.97 -51.93 -0.41 0.47 16 17 C -0.14 -1.52 5.20 -90.62 -0.47 -1.99 16 18 C -0.19 -1.78 10.19 -26.70 -0.27 -2.06 16 19 C -0.18 -1.83 10.01 -26.70 -0.27 -2.10 16 20 C -0.12 -1.70 5.48 -25.07 -0.14 -1.83 16 21 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 22 H 0.03 0.80 8.14 -51.93 -0.42 0.38 16 23 H -0.02 -0.45 8.07 -51.93 -0.42 -0.87 16 24 H 0.33 6.90 8.31 -39.29 -0.33 6.57 16 25 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 26 H 0.08 1.49 7.92 -51.92 -0.41 1.07 16 27 H 0.07 0.89 7.92 -51.93 -0.41 0.48 16 28 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 29 H 0.10 1.14 7.97 -51.93 -0.41 0.72 16 30 H 0.09 0.85 8.08 -51.93 -0.42 0.43 16 31 H 0.09 0.76 8.14 -51.93 -0.42 0.34 16 32 H 0.09 0.83 8.14 -51.93 -0.42 0.41 16 33 H 0.09 0.95 8.14 -51.93 -0.42 0.52 16 34 H 0.06 0.79 8.14 -51.93 -0.42 0.36 16 35 H 0.07 1.13 7.87 -51.93 -0.41 0.72 16 LS Contribution 285.43 15.07 4.30 4.30 Total: -1.00 -29.85 285.43 -9.18 -39.02 By element: Atomic # 1 Polarization: 8.13 SS G_CDS: -6.13 Total: 2.00 kcal Atomic # 6 Polarization: -17.61 SS G_CDS: -2.40 Total: -20.01 kcal Atomic # 7 Polarization: -42.34 SS G_CDS: 0.08 Total: -42.26 kcal Atomic # 14 Polarization: 21.97 SS G_CDS: -5.02 Total: 16.95 kcal Total LS contribution 4.30 Total: 4.30 kcal Total: -29.85 -9.18 -39.02 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308192251.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.951 kcal (2) G-P(sol) polarization free energy of solvation -29.849 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.102 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.176 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.025 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.926 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds