Wall clock time and date at job start Mon Mar 30 2020 02:45:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86794 * 120.00464 * 2 1 4 4 H 1.48496 * 109.47341 * 179.97438 * 3 2 1 5 5 H 1.48508 * 109.46983 * 299.99446 * 3 2 1 6 6 H 1.48503 * 109.47491 * 59.99259 * 3 2 1 7 7 C 1.37884 * 119.99698 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99697 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99942 * 0.28408 * 7 2 1 10 10 N 1.46895 * 109.46770 * 179.72214 * 9 7 2 11 11 C 1.46910 * 110.99769 * 180.02562 * 10 9 7 12 12 H 1.09001 * 110.00996 * 325.06029 * 11 10 9 13 13 C 1.54260 * 110.03257 * 86.44933 * 11 10 9 14 14 C 1.54892 * 104.19344 * 142.89850 * 13 11 10 15 15 C 1.54887 * 102.74678 * 322.05497 * 14 13 11 16 16 H 1.09004 * 110.49026 * 279.26544 * 15 14 13 17 17 C 1.52999 * 110.48886 * 156.75387 * 15 14 13 18 18 C 1.53006 * 117.50334 * 130.20138 * 17 15 14 19 19 C 1.52998 * 117.49904 * 61.54197 * 17 15 14 20 20 C 1.53872 * 110.03094 * 203.61854 * 11 10 9 21 21 H 0.97005 * 119.99651 * 0.02562 * 1 2 3 22 22 H 1.09004 * 109.46965 * 299.72070 * 9 7 2 23 23 H 1.08994 * 109.46990 * 59.71924 * 9 7 2 24 24 H 1.00894 * 111.00555 * 56.04687 * 10 9 7 25 25 H 1.08998 * 110.48865 * 261.57441 * 13 11 10 26 26 H 1.08998 * 110.49139 * 24.21671 * 13 11 10 27 27 H 1.09000 * 110.75853 * 80.36930 * 14 13 11 28 28 H 1.09002 * 110.75818 * 203.74431 * 14 13 11 29 29 H 1.08997 * 115.55154 * 275.87433 * 17 15 14 30 30 H 1.08997 * 117.49378 * 359.97438 * 18 17 15 31 31 H 1.08992 * 117.49748 * 145.02130 * 18 17 15 32 32 H 1.09008 * 117.50029 * 214.98487 * 19 17 15 33 33 H 1.09005 * 117.50013 * 359.97438 * 19 17 15 34 34 H 1.09005 * 110.03635 * 0.02562 * 20 11 10 35 35 H 1.09002 * 110.03069 * 121.42605 * 20 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.7092 1.3462 0.0006 5 1 1.8906 2.3963 -1.2126 6 1 1.8905 2.3965 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 -0.0054 10 7 2.2055 -3.6157 -0.0102 11 6 1.5051 -4.9071 -0.0167 12 1 0.5890 -4.8375 0.5698 13 6 1.1749 -5.3219 -1.4653 14 6 1.3741 -6.8580 -1.4753 15 6 2.6105 -7.0482 -0.5619 16 1 3.5281 -6.8488 -1.1155 17 6 2.6342 -8.4632 0.0195 18 6 3.9385 -9.2543 -0.0998 19 6 2.7331 -9.6300 -0.9653 20 6 2.4179 -6.0046 0.5577 21 1 -0.4850 0.8401 -0.0004 22 1 0.6242 -2.5609 0.8844 23 1 0.6244 -2.5529 -0.8956 24 1 2.8403 -3.5522 0.7714 25 1 0.1429 -5.0696 -1.7086 26 1 1.8605 -4.8438 -2.1648 27 1 0.5035 -7.3632 -1.0570 28 1 1.5810 -7.2142 -2.4844 29 1 2.0356 -8.6124 0.9180 30 1 4.7794 -8.7668 -0.5929 31 1 4.1975 -9.9241 0.7201 32 1 2.1996 -10.5469 -0.7144 33 1 2.7807 -9.3895 -2.0274 34 1 3.3805 -5.5791 0.8417 35 1 1.9449 -6.4685 1.4232 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000308192253.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:45:25 Heat of formation + Delta-G solvation = 2.274187 kcal Electronic energy + Delta-G solvation = -13588.692137 eV Core-core repulsion = 11393.215217 eV Total energy + Delta-G solvation = -2195.476920 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 209.148 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -38.88385 -36.41054 -33.71165 -31.89383 -28.52627 -27.67474 -25.09627 -22.50227 -21.82003 -21.52354 -19.67817 -19.28177 -16.33119 -15.76523 -15.41007 -14.53637 -14.48635 -13.96130 -13.50910 -13.07317 -12.39488 -12.27896 -11.67319 -11.58543 -11.37258 -11.14000 -10.89136 -10.82074 -10.60241 -10.52799 -10.36575 -10.25574 -10.05433 -9.81514 -9.62508 -9.07991 -8.45560 -7.22265 -6.00378 -4.02010 3.32620 3.39695 3.45081 3.76188 4.45676 4.59499 4.83558 4.86930 5.04949 5.18331 5.23674 5.35648 5.54095 5.55836 5.60282 5.78222 5.83725 5.94985 6.02717 6.04742 6.05329 6.13424 6.28957 6.33863 6.45602 6.59225 6.68017 6.84540 7.36008 7.47865 7.84086 8.18797 8.47167 8.69185 9.08254 9.62914 11.10861 Molecular weight = 209.15amu Principal moments of inertia in cm(-1) A = 0.075208 B = 0.005410 C = 0.005239 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 372.209896 B = 5174.835741 C = 5343.677573 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.055 3.945 3 Si 0.898 3.102 4 H -0.272 1.272 5 H -0.284 1.284 6 H -0.285 1.285 7 C -0.513 4.513 8 H 0.062 0.938 9 C 0.193 3.807 10 N -0.684 5.684 11 C 0.081 3.919 12 H 0.035 0.965 13 C -0.112 4.112 14 C -0.114 4.114 15 C -0.058 4.058 16 H 0.074 0.926 17 C -0.140 4.140 18 C -0.184 4.184 19 C -0.182 4.182 20 C -0.116 4.116 21 H 0.260 0.740 22 H -0.016 1.016 23 H 0.028 0.972 24 H 0.327 0.673 25 H 0.057 0.943 26 H 0.076 0.924 27 H 0.062 0.938 28 H 0.059 0.941 29 H 0.101 0.899 30 H 0.093 0.907 31 H 0.089 0.911 32 H 0.089 0.911 33 H 0.093 0.907 34 H 0.068 0.932 35 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.215 -16.124 -0.494 16.673 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.146 4.146 3 Si 0.726 3.274 4 H -0.197 1.197 5 H -0.210 1.210 6 H -0.211 1.211 7 C -0.551 4.551 8 H 0.080 0.920 9 C 0.066 3.934 10 N -0.316 5.316 11 C -0.030 4.030 12 H 0.053 0.947 13 C -0.150 4.150 14 C -0.152 4.152 15 C -0.076 4.076 16 H 0.092 0.908 17 C -0.158 4.158 18 C -0.221 4.221 19 C -0.219 4.219 20 C -0.154 4.154 21 H 0.070 0.930 22 H 0.002 0.998 23 H 0.046 0.954 24 H 0.144 0.856 25 H 0.076 0.924 26 H 0.095 0.905 27 H 0.081 0.919 28 H 0.078 0.922 29 H 0.119 0.881 30 H 0.111 0.889 31 H 0.107 0.893 32 H 0.107 0.893 33 H 0.111 0.889 34 H 0.087 0.913 35 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 4.143 -15.974 -1.171 16.544 hybrid contribution -0.028 0.913 0.947 1.316 sum 4.115 -15.061 -0.224 15.615 Atomic orbital electron populations 1.69981 1.06091 1.26595 1.51160 1.24998 0.94863 0.99357 0.95416 0.86441 0.80081 0.83406 0.77478 1.19661 1.21009 1.21123 1.21261 0.93540 0.90350 1.49993 0.91962 1.19586 0.90654 0.87499 0.95641 1.60834 1.20916 1.01127 1.48674 1.22097 0.95136 0.90340 0.95411 0.94732 1.22395 1.01182 0.93874 0.97566 1.22487 0.97280 0.96758 0.98644 1.21517 0.98799 0.91163 0.96160 0.90752 1.22426 1.00380 0.92491 1.00490 1.23009 0.92306 1.03983 1.02802 1.22913 1.02359 0.99178 0.97458 1.22380 1.00054 0.95707 0.97210 0.93022 0.99778 0.95421 0.85559 0.92447 0.90529 0.91902 0.92179 0.88103 0.88879 0.89259 0.89256 0.88874 0.91342 0.92315 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.31 13.29 55.43 0.74 -26.58 16 2 C 0.05 1.59 5.46 -17.82 -0.10 1.49 16 3 Si 0.90 21.98 29.54 -169.99 -5.02 16.96 16 4 H -0.27 -6.52 7.11 56.52 0.40 -6.12 16 5 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 6 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 7 C -0.51 -14.84 9.32 -34.44 -0.32 -15.16 16 8 H 0.06 1.77 7.81 -52.49 -0.41 1.36 16 9 C 0.19 5.19 5.26 -4.98 -0.03 5.17 16 10 N -0.68 -15.06 6.24 -106.81 -0.67 -15.72 16 11 C 0.08 1.48 3.24 -66.59 -0.22 1.26 16 12 H 0.03 0.68 7.83 -51.93 -0.41 0.27 16 13 C -0.11 -1.89 6.43 -25.07 -0.16 -2.05 16 14 C -0.11 -1.52 6.07 -24.74 -0.15 -1.67 16 15 C -0.06 -0.75 3.03 -88.96 -0.27 -1.02 16 16 H 0.07 1.00 7.95 -51.93 -0.41 0.58 16 17 C -0.14 -1.54 5.17 -90.62 -0.47 -2.01 16 18 C -0.18 -1.81 10.19 -26.69 -0.27 -2.08 16 19 C -0.18 -1.77 9.97 -26.69 -0.27 -2.03 16 20 C -0.12 -1.70 6.06 -25.62 -0.16 -1.86 16 21 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 22 H -0.02 -0.45 8.07 -51.93 -0.42 -0.86 16 23 H 0.03 0.80 8.10 -51.93 -0.42 0.38 16 24 H 0.33 6.88 8.04 -39.29 -0.32 6.57 16 25 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 26 H 0.08 1.40 8.05 -51.93 -0.42 0.99 16 27 H 0.06 0.80 8.06 -51.93 -0.42 0.38 16 28 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 29 H 0.10 1.09 7.80 -51.93 -0.41 0.69 16 30 H 0.09 0.91 8.07 -51.93 -0.42 0.49 16 31 H 0.09 0.78 8.14 -51.93 -0.42 0.36 16 32 H 0.09 0.77 8.14 -51.92 -0.42 0.35 16 33 H 0.09 0.90 8.14 -51.93 -0.42 0.47 16 34 H 0.07 1.02 7.49 -51.93 -0.39 0.63 16 35 H 0.06 0.80 7.62 -51.93 -0.40 0.41 16 LS Contribution 284.52 15.07 4.29 4.29 Total: -1.00 -29.90 284.52 -9.15 -39.05 By element: Atomic # 1 Polarization: 8.04 SS G_CDS: -6.08 Total: 1.96 kcal Atomic # 6 Polarization: -17.55 SS G_CDS: -2.40 Total: -19.95 kcal Atomic # 7 Polarization: -42.37 SS G_CDS: 0.07 Total: -42.30 kcal Atomic # 14 Polarization: 21.98 SS G_CDS: -5.02 Total: 16.96 kcal Total LS contribution 4.29 Total: 4.29 kcal Total: -29.90 -9.15 -39.05 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308192253.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.321 kcal (2) G-P(sol) polarization free energy of solvation -29.901 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.420 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.146 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.047 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.274 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds