Wall clock time and date at job start Mon Mar 30 2020 02:42:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86798 * 119.99828 * 2 1 4 4 H 1.48506 * 109.47297 * 359.97438 * 3 2 1 5 5 H 1.48503 * 109.47261 * 239.99650 * 3 2 1 6 6 H 1.48500 * 109.47454 * 119.99643 * 3 2 1 7 7 C 1.37875 * 120.00192 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00135 * 180.02562 * 7 2 1 9 9 C 1.50698 * 120.00046 * 0.02562 * 7 2 1 10 10 C 1.53006 * 109.47184 * 179.97438 * 9 7 2 11 11 C 1.52997 * 109.47127 * 179.97438 * 10 9 7 12 12 N 1.46896 * 109.47114 * 179.97438 * 11 10 9 13 13 C 1.46652 * 110.99991 * 66.04453 * 12 11 10 14 14 C 1.53312 * 108.82373 * 179.00146 * 13 12 11 15 15 C 1.53066 * 108.35117 * 73.67903 * 14 13 12 16 16 C 1.52940 * 109.52048 * 307.28519 * 15 14 13 17 17 H 1.09001 * 115.46243 * 232.16601 * 16 15 14 18 18 C 1.53593 * 116.04418 * 89.12535 * 16 15 14 19 19 C 1.45861 * 111.00479 * 300.05308 * 12 11 10 20 20 H 1.09003 * 114.62230 * 292.85824 * 19 12 11 21 21 H 0.97001 * 119.99934 * 179.97438 * 1 2 3 22 22 H 1.09001 * 109.46665 * 299.99501 * 9 7 2 23 23 H 1.08993 * 109.47304 * 59.99945 * 9 7 2 24 24 H 1.09001 * 109.47002 * 299.99404 * 10 9 7 25 25 H 1.09001 * 109.46801 * 59.99558 * 10 9 7 26 26 H 1.09001 * 109.46832 * 299.99679 * 11 10 9 27 27 H 1.09004 * 109.47261 * 59.99697 * 11 10 9 28 28 H 1.08998 * 109.58159 * 298.80895 * 13 12 11 29 29 H 1.09008 * 109.58061 * 59.20213 * 13 12 11 30 30 H 1.09005 * 109.68790 * 193.39475 * 14 13 12 31 31 H 1.08996 * 109.68910 * 313.96716 * 14 13 12 32 32 H 1.09002 * 109.46171 * 67.29287 * 15 14 13 33 33 H 1.08994 * 109.46317 * 187.27203 * 15 14 13 34 34 H 1.08993 * 117.52671 * 356.58465 * 18 16 15 35 35 H 1.09000 * 117.53022 * 141.73419 * 18 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 1.2840 2.7465 -0.0006 5 1 3.1029 1.6964 -1.2125 6 1 3.1028 1.6966 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0005 10 6 2.2454 -3.6621 0.0005 11 6 1.4805 -4.9871 0.0012 12 7 2.4351 -6.1036 0.0006 13 6 3.2000 -6.1417 1.2512 14 6 4.1599 -7.3363 1.2077 15 6 5.3038 -7.0007 0.2475 16 6 4.7279 -6.5573 -1.0982 17 1 5.1197 -7.0801 -1.9707 18 6 4.4383 -5.0562 -1.2460 19 6 3.2923 -6.0579 -1.1787 20 1 2.7771 -6.2393 -2.1220 21 1 -0.4850 -0.8401 -0.0004 22 1 0.6242 -2.5567 0.8904 23 1 0.6248 -2.5571 -0.8896 24 1 2.8720 -3.6043 -0.8895 25 1 2.8721 -3.6042 0.8905 26 1 0.8542 -5.0446 0.8914 27 1 0.8534 -5.0451 -0.8886 28 1 3.7699 -5.2189 1.3591 29 1 2.5173 -6.2522 2.0938 30 1 4.5599 -7.5225 2.2045 31 1 3.6302 -8.2204 0.8530 32 1 5.9063 -6.1954 0.6677 33 1 5.9271 -7.8831 0.1027 34 1 4.6055 -4.4227 -0.3750 35 1 4.6496 -4.5950 -2.2108 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000308196435.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:42:34 Heat of formation + Delta-G solvation = 6.146918 kcal Electronic energy + Delta-G solvation = -14119.796630 eV Core-core repulsion = 11924.487644 eV Total energy + Delta-G solvation = -2195.308986 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 209.148 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.00397 -35.10049 -33.39387 -32.74783 -30.45813 -26.61649 -25.14482 -23.04166 -22.59015 -21.13963 -20.48577 -18.18833 -16.75767 -16.21347 -15.25106 -14.67943 -13.86061 -13.67489 -13.63882 -13.45118 -13.21117 -12.66044 -11.98183 -11.65982 -11.49362 -11.26452 -11.03901 -10.91123 -10.68367 -10.52744 -10.25920 -10.12265 -9.85297 -9.63979 -9.38388 -8.62589 -8.30053 -7.76825 -6.33420 -4.02241 3.43957 3.46040 3.64843 3.80882 4.22197 4.56200 4.77520 4.86119 4.96818 5.09973 5.22036 5.40089 5.43299 5.56571 5.65322 5.79316 5.90911 5.92110 5.96291 6.01355 6.06522 6.15913 6.21755 6.32682 6.34922 6.56670 6.72552 6.97965 7.37055 7.40270 7.44441 7.59072 8.25730 8.48969 8.91787 9.70012 11.06957 Molecular weight = 209.15amu Principal moments of inertia in cm(-1) A = 0.047823 B = 0.006970 C = 0.006622 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 585.353953 B = 4016.365991 C = 4227.033937 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.914 5.914 2 C 0.013 3.987 3 Si 1.067 2.933 4 H -0.282 1.282 5 H -0.288 1.288 6 H -0.289 1.289 7 C -0.600 4.600 8 H 0.046 0.954 9 C 0.011 3.989 10 C -0.141 4.141 11 C 0.054 3.946 12 N -0.511 5.511 13 C 0.049 3.951 14 C -0.117 4.117 15 C -0.090 4.090 16 C -0.155 4.155 17 H 0.103 0.897 18 C -0.213 4.213 19 C 0.045 3.955 20 H 0.113 0.887 21 H 0.268 0.732 22 H 0.004 0.996 23 H 0.006 0.994 24 H 0.063 0.937 25 H 0.046 0.954 26 H 0.069 0.931 27 H 0.070 0.930 28 H 0.042 0.958 29 H 0.074 0.926 30 H 0.065 0.935 31 H 0.072 0.928 32 H 0.063 0.937 33 H 0.064 0.936 34 H 0.099 0.901 35 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.483 -13.457 -0.004 15.908 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.550 5.550 2 C -0.190 4.190 3 Si 0.896 3.104 4 H -0.207 1.207 5 H -0.215 1.215 6 H -0.215 1.215 7 C -0.639 4.639 8 H 0.064 0.936 9 C -0.027 4.027 10 C -0.180 4.180 11 C -0.072 4.072 12 N -0.232 5.232 13 C -0.079 4.079 14 C -0.155 4.155 15 C -0.128 4.128 16 C -0.174 4.174 17 H 0.121 0.879 18 C -0.253 4.253 19 C -0.065 4.065 20 H 0.131 0.869 21 H 0.079 0.921 22 H 0.023 0.977 23 H 0.024 0.976 24 H 0.082 0.918 25 H 0.064 0.936 26 H 0.088 0.912 27 H 0.089 0.911 28 H 0.060 0.940 29 H 0.093 0.907 30 H 0.084 0.916 31 H 0.091 0.909 32 H 0.081 0.919 33 H 0.083 0.917 34 H 0.117 0.883 35 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 8.002 -12.254 -0.012 14.636 hybrid contribution 0.709 -0.826 -0.019 1.089 sum 8.712 -13.080 -0.031 15.715 Atomic orbital electron populations 1.70778 1.06861 1.30567 1.46839 1.25841 0.96584 1.02693 0.93887 0.83569 0.74915 0.75473 0.76458 1.20714 1.21497 1.21519 1.22060 0.94138 0.92184 1.55479 0.93609 1.19156 0.94565 0.93192 0.95738 1.22260 0.99809 0.94960 1.00930 1.22306 0.94387 0.88386 1.02162 1.61521 1.17167 1.43793 1.00717 1.22150 0.96021 0.97511 0.92233 1.21658 0.96155 0.98733 0.98959 1.21129 0.97336 1.00805 0.93524 1.22505 0.98282 0.97565 0.99036 0.87913 1.23734 1.06049 0.91794 1.03675 1.22060 0.87421 1.01850 0.95168 0.86936 0.92124 0.97734 0.97582 0.91806 0.93577 0.91216 0.91104 0.93957 0.90734 0.91624 0.90907 0.91862 0.91726 0.88272 0.88858 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -28.64 13.65 55.43 0.76 -27.88 16 2 C 0.01 0.40 5.46 -17.82 -0.10 0.30 16 3 Si 1.07 25.87 29.90 -169.99 -5.08 20.79 16 4 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 5 H -0.29 -6.67 7.11 56.52 0.40 -6.26 16 6 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 7 C -0.60 -17.61 9.11 -34.44 -0.31 -17.92 16 8 H 0.05 1.33 7.74 -52.48 -0.41 0.92 16 9 C 0.01 0.29 4.28 -27.88 -0.12 0.17 16 10 C -0.14 -2.98 3.65 -26.73 -0.10 -3.08 16 11 C 0.05 0.97 5.33 -3.83 -0.02 0.95 16 12 N -0.51 -8.03 4.88 -228.36 -1.12 -9.15 16 13 C 0.05 0.70 4.94 -3.80 -0.02 0.68 16 14 C -0.12 -1.38 6.06 -26.54 -0.16 -1.54 16 15 C -0.09 -1.03 5.91 -26.73 -0.16 -1.19 16 16 C -0.16 -1.96 6.24 -90.74 -0.57 -2.53 16 17 H 0.10 1.14 8.14 -51.93 -0.42 0.72 16 18 C -0.21 -3.15 7.23 -26.75 -0.19 -3.35 16 19 C 0.04 0.66 5.40 -69.00 -0.37 0.29 16 20 H 0.11 1.60 8.14 -51.93 -0.42 1.18 16 21 H 0.27 8.37 7.22 -40.82 -0.29 8.08 16 22 H 0.00 0.12 8.01 -51.93 -0.42 -0.30 16 23 H 0.01 0.16 8.01 -51.93 -0.42 -0.25 16 24 H 0.06 1.35 5.28 -51.93 -0.27 1.08 16 25 H 0.05 0.99 6.50 -51.93 -0.34 0.65 16 26 H 0.07 1.24 8.12 -51.93 -0.42 0.81 16 27 H 0.07 1.26 8.14 -51.93 -0.42 0.84 16 28 H 0.04 0.67 5.35 -51.93 -0.28 0.39 16 29 H 0.07 1.04 8.14 -51.92 -0.42 0.62 16 30 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 31 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 32 H 0.06 0.74 8.07 -51.93 -0.42 0.32 16 33 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 34 H 0.10 1.65 6.05 -51.93 -0.31 1.33 16 35 H 0.09 1.33 8.14 -51.93 -0.42 0.91 16 LS Contribution 268.86 15.07 4.05 4.05 Total: -1.00 -30.88 268.86 -9.26 -40.14 By element: Atomic # 1 Polarization: 5.02 SS G_CDS: -5.75 Total: -0.73 kcal Atomic # 6 Polarization: -25.09 SS G_CDS: -2.12 Total: -27.21 kcal Atomic # 7 Polarization: -36.67 SS G_CDS: -0.36 Total: -37.03 kcal Atomic # 14 Polarization: 25.87 SS G_CDS: -5.08 Total: 20.79 kcal Total LS contribution 4.05 Total: 4.05 kcal Total: -30.88 -9.26 -40.14 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308196435.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.285 kcal (2) G-P(sol) polarization free energy of solvation -30.876 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.410 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.263 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.138 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.147 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds