Wall clock time and date at job start Mon Mar 30 2020 02:46:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 120.00017 * 2 1 4 4 H 1.48501 * 109.47057 * 359.97438 * 3 2 1 5 5 H 1.48500 * 109.47389 * 119.99828 * 3 2 1 6 6 H 1.48504 * 109.47102 * 240.00177 * 3 2 1 7 7 C 1.37871 * 120.00217 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00140 * 180.02562 * 7 2 1 9 9 C 1.50706 * 120.00102 * 0.02562 * 7 2 1 10 10 N 1.46895 * 109.47182 * 180.02562 * 9 7 2 11 11 C 1.46901 * 110.99820 * 180.02562 * 10 9 7 12 12 H 1.08995 * 110.02017 * 34.29609 * 11 10 9 13 13 C 1.53880 * 110.03071 * 272.90707 * 11 10 9 14 14 C 1.54378 * 106.54394 * 240.73044 * 13 11 10 15 15 C 1.54891 * 104.19743 * 336.35030 * 14 13 11 16 16 C 1.54268 * 110.03338 * 155.69256 * 11 10 9 17 17 H 1.08996 * 110.48917 * 24.21131 * 16 11 10 18 18 C 1.53004 * 110.48366 * 261.70404 * 16 11 10 19 19 C 1.53000 * 117.50093 * 128.74453 * 18 16 11 20 20 C 1.52998 * 117.50163 * 60.08348 * 18 16 11 21 21 H 0.97001 * 119.99646 * 179.97438 * 1 2 3 22 22 H 1.09001 * 109.46564 * 300.00328 * 9 7 2 23 23 H 1.09006 * 109.46863 * 59.99666 * 9 7 2 24 24 H 1.00907 * 111.00089 * 303.95190 * 10 9 7 25 25 H 1.08995 * 110.02973 * 359.97438 * 13 11 10 26 26 H 1.08995 * 110.03259 * 121.42964 * 13 11 10 27 27 H 1.09001 * 110.45746 * 217.68290 * 14 13 11 28 28 H 1.08995 * 110.61714 * 95.09687 * 14 13 11 29 29 H 1.08997 * 110.75594 * 279.65679 * 15 14 13 30 30 H 1.09000 * 110.91524 * 156.35706 * 15 14 13 31 31 H 1.09002 * 115.54919 * 274.41819 * 18 16 11 32 32 H 1.08996 * 117.49549 * 0.02562 * 19 18 16 33 33 H 1.09001 * 117.49758 * 145.01773 * 19 18 16 34 34 H 1.08994 * 117.50179 * 214.97974 * 20 18 16 35 35 H 1.09002 * 117.49456 * 359.97438 * 20 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 1.2842 2.7465 -0.0006 5 1 3.1029 1.6965 1.2125 6 1 3.1029 1.6964 -1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4992 0.0005 10 7 2.2057 -3.6156 0.0018 11 6 1.5054 -4.9070 0.0012 12 1 0.5845 -4.8318 -0.5769 13 6 1.1881 -5.3352 1.4448 14 6 1.9180 -6.6756 1.6762 15 6 2.1011 -7.2592 0.2532 16 6 2.4153 -6.0013 -0.5942 17 1 3.4641 -5.7236 -0.4903 18 6 2.0699 -6.2430 -2.0650 19 6 3.2184 -6.2086 -3.0753 20 6 2.2069 -5.0607 -3.0264 21 1 -0.4850 -0.8401 -0.0004 22 1 0.6241 -2.5566 0.8903 23 1 0.6247 -2.5571 -0.8897 24 1 2.8412 -3.5489 -0.7792 25 1 1.5541 -4.5850 2.1457 26 1 0.1133 -5.4685 1.5669 27 1 1.3074 -7.3416 2.2860 28 1 2.8865 -6.5089 2.1477 29 1 1.1831 -7.7365 -0.0896 30 1 2.9338 -7.9619 0.2249 31 1 1.2598 -6.9490 -2.2478 32 1 4.2200 -6.0142 -2.6921 33 1 3.1637 -6.8918 -3.9229 34 1 1.4872 -4.9892 -3.8419 35 1 2.5427 -4.1106 -2.6110 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000379377738.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:46:36 Heat of formation + Delta-G solvation = -0.268372 kcal Electronic energy + Delta-G solvation = -14049.556848 eV Core-core repulsion = 11853.969675 eV Total energy + Delta-G solvation = -2195.587174 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 209.148 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -39.04762 -35.92254 -34.24099 -32.05699 -28.48045 -27.41796 -24.79351 -22.33596 -22.08534 -21.36616 -20.00609 -19.06753 -16.81065 -15.84552 -15.57857 -14.47506 -13.86892 -13.65300 -13.57554 -13.44853 -12.57304 -12.35562 -11.73363 -11.40829 -11.28023 -10.98626 -10.86676 -10.84239 -10.73603 -10.51581 -10.43129 -10.20112 -10.05534 -9.92166 -9.52575 -8.57168 -8.38617 -7.34157 -6.34990 -4.03568 3.45684 3.48350 3.66826 3.91070 4.54902 4.69737 4.86412 4.90423 5.11414 5.19582 5.24075 5.41854 5.44948 5.58402 5.76351 5.82467 5.84793 5.86388 5.95096 6.04452 6.13325 6.22224 6.27071 6.32626 6.41408 6.58785 6.61397 6.73554 7.05287 7.21628 7.87314 8.21299 8.53245 8.61640 8.90450 9.68361 11.04789 Molecular weight = 209.15amu Principal moments of inertia in cm(-1) A = 0.034449 B = 0.008030 C = 0.007035 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 812.603688 B = 3486.169109 C = 3978.908334 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.914 5.914 2 C 0.014 3.986 3 Si 1.072 2.928 4 H -0.283 1.283 5 H -0.287 1.287 6 H -0.288 1.288 7 C -0.595 4.595 8 H 0.054 0.946 9 C 0.185 3.815 10 N -0.676 5.676 11 C 0.089 3.911 12 H 0.037 0.963 13 C -0.116 4.116 14 C -0.120 4.120 15 C -0.113 4.113 16 C -0.065 4.065 17 H 0.081 0.919 18 C -0.145 4.145 19 C -0.181 4.181 20 C -0.180 4.180 21 H 0.267 0.733 22 H 0.017 0.983 23 H -0.025 1.025 24 H 0.328 0.672 25 H 0.076 0.924 26 H 0.052 0.948 27 H 0.058 0.942 28 H 0.064 0.936 29 H 0.063 0.937 30 H 0.062 0.938 31 H 0.100 0.900 32 H 0.093 0.907 33 H 0.088 0.912 34 H 0.090 0.910 35 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.176 -13.508 -2.343 14.332 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.551 5.551 2 C -0.190 4.190 3 Si 0.901 3.099 4 H -0.208 1.208 5 H -0.214 1.214 6 H -0.215 1.215 7 C -0.633 4.633 8 H 0.073 0.927 9 C 0.057 3.943 10 N -0.307 5.307 11 C -0.022 4.022 12 H 0.055 0.945 13 C -0.154 4.154 14 C -0.158 4.158 15 C -0.151 4.151 16 C -0.084 4.084 17 H 0.099 0.901 18 C -0.163 4.163 19 C -0.218 4.218 20 C -0.217 4.217 21 H 0.077 0.923 22 H 0.035 0.965 23 H -0.008 1.008 24 H 0.146 0.854 25 H 0.095 0.905 26 H 0.071 0.929 27 H 0.076 0.924 28 H 0.083 0.917 29 H 0.082 0.918 30 H 0.080 0.920 31 H 0.118 0.882 32 H 0.111 0.889 33 H 0.107 0.893 34 H 0.109 0.891 35 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 4.055 -11.828 -1.655 12.613 hybrid contribution -0.239 -1.691 -0.974 1.966 sum 3.816 -13.519 -2.629 14.291 Atomic orbital electron populations 1.70790 1.06877 1.30412 1.46975 1.25849 0.96508 1.02719 0.93894 0.83495 0.74795 0.75138 0.76520 1.20827 1.21387 1.21508 1.22018 0.94736 0.91391 1.55174 0.92724 1.19668 0.91257 0.88983 0.94356 1.60805 1.20459 1.00761 1.48655 1.22125 0.95258 0.90061 0.94767 0.94492 1.22214 0.98898 0.96681 0.97634 1.22324 1.00457 0.96657 0.96343 1.22454 1.00842 0.96508 0.95269 1.21790 1.00114 0.95271 0.91185 0.90081 1.22366 1.00518 1.01619 0.91826 1.22996 0.95082 1.02242 1.01509 1.22996 1.02491 0.94183 1.02059 0.92306 0.96462 1.00765 0.85410 0.90498 0.92882 0.92358 0.91727 0.91809 0.91955 0.88228 0.88881 0.89316 0.89134 0.88277 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -28.46 13.65 55.43 0.76 -27.70 16 2 C 0.01 0.41 5.46 -17.82 -0.10 0.31 16 3 Si 1.07 25.78 29.90 -169.99 -5.08 20.69 16 4 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 5 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 6 H -0.29 -6.59 7.11 56.52 0.40 -6.19 16 7 C -0.59 -17.34 9.32 -34.44 -0.32 -17.67 16 8 H 0.05 1.58 7.81 -52.48 -0.41 1.17 16 9 C 0.18 4.92 4.58 -4.98 -0.02 4.89 16 10 N -0.68 -14.84 6.15 -106.80 -0.66 -15.50 16 11 C 0.09 1.62 2.52 -66.59 -0.17 1.45 16 12 H 0.04 0.73 7.52 -51.93 -0.39 0.34 16 13 C -0.12 -1.97 6.52 -25.55 -0.17 -2.13 16 14 C -0.12 -1.63 6.83 -25.01 -0.17 -1.80 16 15 C -0.11 -1.43 6.33 -24.74 -0.16 -1.59 16 16 C -0.06 -0.96 2.47 -88.96 -0.22 -1.18 16 17 H 0.08 1.26 7.77 -51.93 -0.40 0.85 16 18 C -0.15 -1.98 5.09 -90.62 -0.46 -2.44 16 19 C -0.18 -2.24 10.19 -26.69 -0.27 -2.51 16 20 C -0.18 -2.63 9.93 -26.70 -0.27 -2.90 16 21 H 0.27 8.31 7.22 -40.82 -0.29 8.01 16 22 H 0.02 0.49 7.99 -51.93 -0.41 0.08 16 23 H -0.03 -0.71 7.93 -51.93 -0.41 -1.12 16 24 H 0.33 6.99 6.59 -39.29 -0.26 6.73 16 25 H 0.08 1.48 7.92 -51.93 -0.41 1.06 16 26 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 27 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 28 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 29 H 0.06 0.76 7.93 -51.93 -0.41 0.35 16 30 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 31 H 0.10 1.27 7.96 -51.93 -0.41 0.86 16 32 H 0.09 1.12 8.07 -51.93 -0.42 0.70 16 33 H 0.09 0.95 8.14 -51.93 -0.42 0.53 16 34 H 0.09 1.25 8.14 -51.93 -0.42 0.82 16 35 H 0.10 1.67 6.41 -51.93 -0.33 1.34 16 LS Contribution 280.23 15.07 4.22 4.22 Total: -1.00 -30.49 280.23 -8.99 -39.47 By element: Atomic # 1 Polarization: 10.27 SS G_CDS: -5.90 Total: 4.37 kcal Atomic # 6 Polarization: -23.24 SS G_CDS: -2.32 Total: -25.56 kcal Atomic # 7 Polarization: -43.30 SS G_CDS: 0.10 Total: -43.20 kcal Atomic # 14 Polarization: 25.78 SS G_CDS: -5.08 Total: 20.69 kcal Total LS contribution 4.22 Total: 4.22 kcal Total: -30.49 -8.99 -39.47 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000379377738.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.204 kcal (2) G-P(sol) polarization free energy of solvation -30.487 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.717 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.985 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.472 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.268 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds