Wall clock time and date at job start Mon Mar 30 2020 02:13:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.35048 * 126.39694 * 2 1 4 4 N 1.30499 * 108.69491 * 180.27008 * 3 2 1 5 5 C 1.34128 * 109.26028 * 359.76417 * 4 3 2 6 6 C 1.34671 * 108.01866 * 0.02562 * 5 4 3 7 7 C 1.50697 * 126.58956 * 179.97438 * 6 5 4 8 8 C 1.52997 * 109.47466 * 85.02112 * 7 6 5 9 9 N 1.46899 * 109.47254 * 179.97438 * 8 7 6 10 10 C 1.46904 * 111.00029 * 179.97438 * 9 8 7 11 11 C 1.50696 * 109.46800 * 180.02562 * 10 9 8 12 12 H 1.08002 * 120.00575 * 0.02562 * 11 10 9 13 13 C 1.37880 * 119.99722 * 180.02562 * 11 10 9 14 14 N 1.31515 * 119.99924 * 359.97438 * 13 11 10 15 15 Si 1.86800 * 120.00036 * 180.02562 * 13 11 10 16 16 H 1.48495 * 109.47032 * 359.97438 * 15 13 11 17 17 H 1.48496 * 109.47236 * 120.00183 * 15 13 11 18 18 H 1.48500 * 109.46924 * 239.99946 * 15 13 11 19 19 H 1.09005 * 109.46654 * 270.12055 * 1 2 3 20 20 H 1.09001 * 109.46811 * 30.11554 * 1 2 3 21 21 H 1.08994 * 109.47304 * 150.11955 * 1 2 3 22 22 H 1.08001 * 125.65451 * 0.07448 * 3 2 1 23 23 H 1.08004 * 125.98860 * 179.97438 * 5 4 3 24 24 H 1.09002 * 109.47120 * 325.01865 * 7 6 5 25 25 H 1.08998 * 109.46862 * 205.02667 * 7 6 5 26 26 H 1.09002 * 109.47153 * 59.99773 * 8 7 6 27 27 H 1.09001 * 109.46832 * 299.99964 * 8 7 6 28 28 H 1.00902 * 111.00582 * 303.95797 * 9 8 7 29 29 H 1.08995 * 109.47167 * 300.00240 * 10 9 8 30 30 H 1.09003 * 109.46442 * 60.00214 * 10 9 8 31 31 H 0.96998 * 120.00185 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2663 1.0870 0.0000 4 7 3.5095 0.6902 -0.0058 5 6 3.5460 -0.6505 -0.0045 6 6 2.2772 -1.1018 0.0018 7 6 1.8363 -2.5428 0.0049 8 6 1.8136 -3.0662 1.4424 9 7 1.3832 -4.4707 1.4454 10 6 1.3500 -5.0083 2.8122 11 6 0.9057 -6.4478 2.7751 12 1 0.6718 -6.9166 1.8307 13 6 0.7978 -7.1663 3.9469 14 7 1.0832 -6.5955 5.0969 15 14 0.2478 -8.9509 3.9010 16 1 -0.0101 -9.3533 2.4950 17 1 1.3124 -9.8120 4.4756 18 1 -0.9969 -9.1058 4.6959 19 1 -0.3633 0.0022 1.0277 20 1 -0.3633 0.8890 -0.5156 21 1 -0.3633 -0.8910 -0.5119 22 1 1.9335 2.1145 0.0011 23 1 4.4368 -1.2612 -0.0087 24 1 2.5323 -3.1370 -0.5872 25 1 0.8375 -2.6181 -0.4250 26 1 1.1175 -2.4720 2.0345 27 1 2.8124 -2.9909 1.8722 28 1 0.4871 -4.5754 0.9935 29 1 2.3459 -4.9469 3.2510 30 1 0.6513 -4.4273 3.4141 31 1 1.0069 -7.1009 5.9213 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000401632316.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:13:55 Heat of formation + Delta-G solvation = 52.158923 kcal Electronic energy + Delta-G solvation = -13092.468688 eV Core-core repulsion = 10795.614589 eV Total energy + Delta-G solvation = -2296.854099 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 209.122 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -42.01551 -35.89922 -34.01789 -32.97043 -31.39749 -27.95293 -27.02057 -25.69332 -22.45732 -21.41975 -21.23081 -19.71992 -16.99426 -16.44680 -15.68573 -15.16841 -14.64605 -14.47347 -13.80081 -13.31392 -13.29279 -12.97790 -12.84406 -12.27674 -12.12337 -11.88608 -11.16308 -10.87110 -10.67475 -10.62299 -9.99407 -9.85213 -9.54258 -9.21060 -8.50880 -8.22519 -7.36252 -6.05398 -4.07805 2.08525 2.79253 3.24268 3.29603 3.36939 3.41853 4.40737 4.59115 4.70890 4.73569 4.95372 5.11499 5.24398 5.30639 5.41923 5.55493 5.72290 5.82491 5.90330 6.17676 6.42088 6.54143 6.83555 7.21214 7.22042 7.38057 7.75397 8.09388 8.12628 8.34046 8.56597 9.01685 9.57394 11.05816 Molecular weight = 209.12amu Principal moments of inertia in cm(-1) A = 0.068217 B = 0.005139 C = 0.005062 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 410.354384 B = 5446.892377 C = 5530.374692 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.071 3.929 2 N -0.461 5.461 3 C 0.168 3.832 4 N -0.495 5.495 5 C -0.030 4.030 6 C -0.010 4.010 7 C -0.042 4.042 8 C 0.067 3.933 9 N -0.690 5.690 10 C 0.194 3.806 11 C -0.515 4.515 12 H 0.063 0.937 13 C 0.055 3.945 14 N -0.898 5.898 15 Si 0.900 3.100 16 H -0.272 1.272 17 H -0.283 1.283 18 H -0.285 1.285 19 H 0.077 0.923 20 H 0.085 0.915 21 H 0.086 0.914 22 H 0.201 0.799 23 H 0.169 0.831 24 H 0.094 0.906 25 H 0.064 0.936 26 H 0.013 0.987 27 H 0.069 0.931 28 H 0.327 0.673 29 H 0.029 0.971 30 H -0.015 1.015 31 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.512 12.470 -10.014 16.189 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 N -0.145 5.145 3 C -0.114 4.114 4 N -0.213 5.213 5 C -0.177 4.177 6 C -0.125 4.125 7 C -0.081 4.081 8 C -0.063 4.063 9 N -0.320 5.320 10 C 0.067 3.933 11 C -0.553 4.553 12 H 0.082 0.918 13 C -0.146 4.146 14 N -0.537 5.537 15 Si 0.727 3.273 16 H -0.196 1.196 17 H -0.209 1.209 18 H -0.211 1.211 19 H 0.096 0.904 20 H 0.104 0.896 21 H 0.105 0.895 22 H 0.218 0.782 23 H 0.187 0.813 24 H 0.113 0.887 25 H 0.082 0.918 26 H 0.032 0.968 27 H 0.088 0.912 28 H 0.143 0.857 29 H 0.047 0.953 30 H 0.003 0.997 31 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -1.335 12.706 -9.946 16.191 hybrid contribution -1.871 -0.910 0.598 2.165 sum -3.206 11.797 -9.348 15.389 Atomic orbital electron populations 1.22032 0.76869 1.04476 1.03794 1.45313 1.07521 1.06865 1.54752 1.24838 0.85799 0.93311 1.07406 1.70236 1.19408 1.12233 1.19448 1.22086 0.95961 0.90884 1.08776 1.21412 0.91241 0.89971 1.09861 1.20098 1.01790 0.87201 0.99018 1.21836 1.00685 0.90306 0.93507 1.60664 1.34044 1.14236 1.23068 1.19560 0.96614 0.94454 0.82652 1.21225 1.44804 0.96180 0.93134 0.91843 1.25005 0.95550 0.98705 0.95358 1.69975 1.49156 1.36847 0.97763 0.86415 0.78165 0.84568 0.78108 1.19622 1.20930 1.21111 0.90436 0.89591 0.89521 0.78196 0.81338 0.88749 0.91774 0.96837 0.91246 0.85711 0.95301 0.99685 0.92921 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.56 11.00 59.85 0.66 1.22 16 2 N -0.46 -5.49 3.15 -121.37 -0.38 -5.87 16 3 C 0.17 2.04 12.56 -90.37 -1.14 0.91 16 4 N -0.50 -7.57 11.25 -14.66 -0.16 -7.73 16 5 C -0.03 -0.44 11.79 -17.81 -0.21 -0.65 16 6 C -0.01 -0.14 6.21 -81.60 -0.51 -0.64 16 7 C -0.04 -0.59 5.81 -27.89 -0.16 -0.75 16 8 C 0.07 1.18 5.67 -3.83 -0.02 1.16 16 9 N -0.69 -14.59 6.49 -115.06 -0.75 -15.33 16 10 C 0.19 5.11 5.44 -4.98 -0.03 5.08 16 11 C -0.51 -14.60 9.32 -34.44 -0.32 -14.92 16 12 H 0.06 1.76 7.81 -52.49 -0.41 1.35 16 13 C 0.06 1.58 5.46 -17.82 -0.10 1.48 16 14 N -0.90 -26.97 13.29 55.43 0.74 -26.23 16 15 Si 0.90 21.60 29.54 -169.99 -5.02 16.58 16 16 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16 17 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 18 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 19 H 0.08 0.61 8.14 -51.93 -0.42 0.18 16 20 H 0.09 0.44 8.14 -51.93 -0.42 0.02 16 21 H 0.09 0.65 7.11 -51.93 -0.37 0.28 16 22 H 0.20 1.59 8.06 -52.49 -0.42 1.17 16 23 H 0.17 2.28 8.06 -52.48 -0.42 1.86 16 24 H 0.09 1.30 8.14 -51.93 -0.42 0.88 16 25 H 0.06 0.80 7.09 -51.93 -0.37 0.43 16 26 H 0.01 0.25 8.14 -51.93 -0.42 -0.18 16 27 H 0.07 1.30 8.14 -51.93 -0.42 0.88 16 28 H 0.33 6.44 8.72 -39.29 -0.34 6.10 16 29 H 0.03 0.83 8.14 -51.93 -0.42 0.40 16 30 H -0.01 -0.41 8.14 -51.93 -0.42 -0.83 16 31 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 LS Contribution 270.45 15.07 4.08 4.08 Total: -1.00 -32.96 270.45 -7.76 -40.71 By element: Atomic # 1 Polarization: 5.33 SS G_CDS: -4.43 Total: 0.90 kcal Atomic # 6 Polarization: -5.28 SS G_CDS: -1.82 Total: -7.10 kcal Atomic # 7 Polarization: -54.61 SS G_CDS: -0.56 Total: -55.17 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -5.02 Total: 16.58 kcal Total LS contribution 4.08 Total: 4.08 kcal Total: -32.96 -7.76 -40.71 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000401632316.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.873 kcal (2) G-P(sol) polarization free energy of solvation -32.958 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.915 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.756 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.714 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.159 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds