Wall clock time and date at job start Mon Mar 30 2020 02:16:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86805 * 119.99451 * 2 1 4 4 H 1.48495 * 109.47006 * 240.00139 * 3 2 1 5 5 H 1.48501 * 109.47160 * 0.02562 * 3 2 1 6 6 H 1.48502 * 109.47018 * 120.00582 * 3 2 1 7 7 C 1.37874 * 120.00576 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00279 * 180.02562 * 7 2 1 9 9 C 1.50700 * 119.99827 * 359.97438 * 7 2 1 10 10 C 1.53002 * 109.47349 * 180.02562 * 9 7 2 11 11 C 1.52998 * 109.47192 * 180.02562 * 10 9 7 12 12 N 1.46904 * 109.46973 * 179.97438 * 11 10 9 13 13 C 1.47632 * 111.00266 * 285.68359 * 12 11 10 14 14 C 1.53646 * 88.14625 * 222.09606 * 13 12 11 15 15 C 1.46686 * 111.00022 * 189.99764 * 12 11 10 16 16 C 1.53067 * 120.99541 * 264.02860 * 15 12 11 17 17 C 1.53917 * 86.84355 * 100.35537 * 16 15 12 18 18 C 1.53230 * 120.92242 * 12.06993 * 15 12 11 19 19 H 0.96996 * 120.00623 * 0.02562 * 1 2 3 20 20 H 1.09000 * 109.47214 * 60.00962 * 9 7 2 21 21 H 1.09007 * 109.47534 * 300.00624 * 9 7 2 22 22 H 1.08997 * 109.47219 * 59.99816 * 10 9 7 23 23 H 1.09007 * 109.46755 * 300.00418 * 10 9 7 24 24 H 1.08996 * 109.47282 * 60.00207 * 11 10 9 25 25 H 1.09001 * 109.46722 * 299.99505 * 11 10 9 26 26 H 1.09000 * 113.43638 * 336.92078 * 13 12 11 27 27 H 1.08997 * 113.44256 * 107.21921 * 13 12 11 28 28 H 1.08996 * 114.20833 * 271.76036 * 14 13 12 29 29 H 1.09001 * 114.20782 * 138.92954 * 14 13 12 30 30 H 1.09007 * 113.64986 * 345.86397 * 16 15 12 31 31 H 1.09005 * 113.73571 * 214.85706 * 16 15 12 32 32 H 1.09002 * 113.58746 * 139.45728 * 17 16 15 33 33 H 1.08999 * 113.58532 * 270.19742 * 17 16 15 34 34 H 1.09002 * 113.65050 * 145.12399 * 18 15 12 35 35 H 1.08998 * 113.69983 * 14.04867 * 18 15 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6179 0.0000 4 1 3.1027 1.6966 -1.2125 5 1 1.2839 2.7465 0.0006 6 1 3.1028 1.6965 1.2124 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1939 -0.0001 9 6 1.2512 -2.4991 -0.0005 10 6 2.2455 -3.6620 -0.0005 11 6 1.4806 -4.9870 -0.0012 12 7 2.4353 -6.1036 -0.0018 13 6 3.0622 -6.2629 -1.3288 14 6 2.8953 -7.7820 -1.1700 15 6 1.7519 -7.3794 -0.2402 16 6 1.3319 -8.2785 0.9253 17 6 -0.0857 -7.7073 0.7438 18 6 0.2966 -7.4159 -0.7184 19 1 -0.4851 0.8400 -0.0004 20 1 0.6243 -2.5568 -0.8904 21 1 0.6248 -2.5571 0.8897 22 1 2.8722 -3.6042 0.8894 23 1 2.8722 -3.6041 -0.8906 24 1 0.8543 -5.0446 -0.8914 25 1 0.8537 -5.0450 0.8887 26 1 2.4690 -5.8440 -2.1417 27 1 4.1032 -5.9409 -1.3581 28 1 3.7284 -8.2731 -0.6674 29 1 2.5745 -8.2937 -2.0774 30 1 1.7942 -8.0081 1.8747 31 1 1.4056 -9.3438 0.7063 32 1 -0.8733 -8.4536 0.8483 33 1 -0.2729 -6.8095 1.3329 34 1 0.0805 -8.2392 -1.3993 35 1 -0.0690 -6.4559 -1.0829 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000685969258.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:16:26 Heat of formation + Delta-G solvation = 21.019559 kcal Electronic energy + Delta-G solvation = -13892.481675 eV Core-core repulsion = 11697.817615 eV Total energy + Delta-G solvation = -2194.664060 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 209.148 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -42.12377 -36.85830 -35.82277 -33.94582 -30.61166 -27.32369 -26.75738 -25.63365 -24.14692 -22.29082 -21.64920 -19.02232 -18.47068 -17.02988 -16.79151 -16.46761 -16.28818 -15.76387 -14.52847 -14.39885 -14.12641 -13.80129 -13.50202 -13.21777 -12.93336 -12.77563 -12.62728 -12.36272 -12.22169 -12.01720 -11.80967 -11.50691 -11.42769 -11.35073 -10.97024 -10.72226 -10.58235 -9.70323 -8.22997 -6.34996 1.37873 1.41618 1.49720 2.38873 2.96941 3.09631 3.52336 3.54906 3.78209 3.93443 3.97217 4.18225 4.30835 4.34466 4.48546 4.62505 4.74285 4.78307 4.83273 4.89423 4.96371 4.97693 5.04255 5.07565 5.14020 5.23711 5.31134 5.33955 5.47575 5.64322 5.70025 5.80475 6.16125 6.26180 6.80878 7.34419 8.88885 Molecular weight = 209.15amu Principal moments of inertia in cm(-1) A = 0.056494 B = 0.006142 C = 0.005780 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 495.507490 B = 4557.911635 C = 4843.315704 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C 0.000 4.000 3 Si 0.968 3.032 4 H -0.266 1.266 5 H -0.280 1.280 6 H -0.267 1.267 7 C -0.547 4.547 8 H 0.058 0.942 9 C 0.028 3.972 10 C -0.088 4.088 11 C 0.035 3.965 12 N -0.468 5.468 13 C -0.007 4.007 14 C -0.115 4.115 15 C 0.022 3.978 16 C -0.114 4.114 17 C -0.141 4.141 18 C -0.146 4.146 19 H 0.265 0.735 20 H -0.009 1.009 21 H -0.011 1.011 22 H 0.046 0.954 23 H 0.047 0.953 24 H 0.041 0.959 25 H 0.059 0.941 26 H 0.062 0.938 27 H 0.083 0.917 28 H 0.101 0.899 29 H 0.095 0.905 30 H 0.060 0.940 31 H 0.111 0.889 32 H 0.086 0.914 33 H 0.058 0.942 34 H 0.111 0.889 35 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.063 -17.217 -2.223 17.628 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.198 4.198 3 Si 0.791 3.209 4 H -0.190 1.190 5 H -0.205 1.205 6 H -0.192 1.192 7 C -0.585 4.585 8 H 0.076 0.924 9 C -0.009 4.009 10 C -0.126 4.126 11 C -0.093 4.093 12 N -0.189 5.189 13 C -0.136 4.136 14 C -0.152 4.152 15 C -0.069 4.069 16 C -0.152 4.152 17 C -0.178 4.178 18 C -0.185 4.185 19 H 0.074 0.926 20 H 0.009 0.991 21 H 0.008 0.992 22 H 0.065 0.935 23 H 0.066 0.934 24 H 0.059 0.941 25 H 0.078 0.922 26 H 0.081 0.919 27 H 0.101 0.899 28 H 0.120 0.880 29 H 0.114 0.886 30 H 0.079 0.921 31 H 0.130 0.870 32 H 0.105 0.895 33 H 0.076 0.924 34 H 0.129 0.871 35 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 3.314 -16.960 -1.599 17.355 hybrid contribution -0.537 1.370 -0.523 1.561 sum 2.777 -15.591 -2.122 15.978 Atomic orbital electron populations 1.70088 1.07842 1.27969 1.51464 1.26011 0.95818 1.03460 0.94503 0.85466 0.78288 0.77855 0.79242 1.19045 1.20507 1.19202 1.21650 0.93477 0.92432 1.50964 0.92399 1.18946 0.94285 0.93075 0.94616 1.21317 0.97949 0.93026 1.00283 1.22508 0.94844 0.91720 1.00226 1.68782 1.20451 1.00976 1.28689 1.23747 1.01045 0.97769 0.91032 1.22994 0.97961 0.94679 0.99594 1.23488 0.93833 0.92254 0.97339 1.22788 0.95219 0.99613 0.97551 1.22808 0.98074 1.00904 0.96055 1.23246 0.94723 1.02493 0.97989 0.92642 0.99083 0.99229 0.93521 0.93390 0.94128 0.92246 0.91921 0.89884 0.88035 0.88612 0.92143 0.87043 0.89530 0.92356 0.87057 0.92608 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -58.27 13.29 21.45 0.28 -57.99 16 2 C 0.00 -0.01 5.46 84.65 0.46 0.45 16 3 Si 0.97 45.33 29.54 68.60 2.03 47.36 16 4 H -0.27 -11.90 7.11 99.48 0.71 -11.20 16 5 H -0.28 -12.69 7.11 99.48 0.71 -11.98 16 6 H -0.27 -12.05 7.11 99.48 0.71 -11.34 16 7 C -0.55 -32.60 9.11 25.60 0.23 -32.37 16 8 H 0.06 3.32 7.74 -2.91 -0.02 3.30 16 9 C 0.03 1.58 4.97 29.85 0.15 1.73 16 10 C -0.09 -3.95 5.26 30.59 0.16 -3.79 16 11 C 0.04 1.33 4.04 86.30 0.35 1.68 16 12 N -0.47 -14.83 6.43 -888.74 -5.71 -20.54 16 13 C -0.01 -0.20 7.02 82.69 0.58 0.39 16 14 C -0.11 -2.33 8.21 30.74 0.25 -2.08 16 15 C 0.02 0.54 1.23 -0.10 0.00 0.54 16 16 C -0.11 -2.43 7.96 30.93 0.25 -2.18 16 17 C -0.14 -3.18 7.84 31.21 0.24 -2.94 16 18 C -0.15 -3.36 7.22 30.98 0.22 -3.13 16 19 H 0.26 15.46 8.31 -92.71 -0.77 14.69 16 20 H -0.01 -0.55 8.14 -2.39 -0.02 -0.57 16 21 H -0.01 -0.64 8.14 -2.38 -0.02 -0.66 16 22 H 0.05 2.14 8.14 -2.39 -0.02 2.12 16 23 H 0.05 2.11 7.68 -2.38 -0.02 2.09 16 24 H 0.04 1.53 5.72 -2.39 -0.01 1.51 16 25 H 0.06 2.33 7.16 -2.39 -0.02 2.32 16 26 H 0.06 1.75 7.69 -2.39 -0.02 1.74 16 27 H 0.08 2.20 8.14 -2.39 -0.02 2.18 16 28 H 0.10 1.87 8.14 -2.39 -0.02 1.85 16 29 H 0.10 1.53 8.14 -2.39 -0.02 1.51 16 30 H 0.06 1.44 8.14 -2.38 -0.02 1.43 16 31 H 0.11 1.76 8.14 -2.38 -0.02 1.74 16 32 H 0.09 1.57 8.14 -2.39 -0.02 1.55 16 33 H 0.06 1.58 7.20 -2.39 -0.02 1.57 16 34 H 0.11 1.97 8.14 -2.39 -0.02 1.95 16 35 H 0.06 1.53 5.90 -2.39 -0.01 1.52 16 Total: -1.00 -66.11 277.72 0.53 -65.58 By element: Atomic # 1 Polarization: 6.27 SS G_CDS: 1.03 Total: 7.30 kcal Atomic # 6 Polarization: -44.61 SS G_CDS: 2.90 Total: -41.71 kcal Atomic # 7 Polarization: -73.10 SS G_CDS: -5.43 Total: -78.53 kcal Atomic # 14 Polarization: 45.33 SS G_CDS: 2.03 Total: 47.36 kcal Total: -66.11 0.53 -65.58 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000685969258.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.597 kcal (2) G-P(sol) polarization free energy of solvation -66.112 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.485 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.535 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.577 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.020 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds