Wall clock time and date at job start Mon Mar 30 2020 02:54:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86800 * 120.00235 * 2 1 4 4 H 1.48495 * 109.47555 * 270.00498 * 3 2 1 5 5 H 1.48503 * 109.46814 * 30.00387 * 3 2 1 6 6 H 1.48496 * 109.47318 * 149.99879 * 3 2 1 7 7 C 1.37879 * 120.00338 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00409 * 179.97438 * 7 2 1 9 9 C 1.50706 * 119.99394 * 359.97438 * 7 2 1 10 10 C 1.53002 * 109.46925 * 180.02562 * 9 7 2 11 11 C 1.52996 * 109.47340 * 180.02562 * 10 9 7 12 12 C 1.53002 * 109.47340 * 180.02562 * 11 10 9 13 13 N 1.46896 * 109.46853 * 179.97438 * 12 11 10 14 14 C 1.48527 * 111.00477 * 69.87444 * 13 12 11 15 15 C 1.54933 * 103.23307 * 159.64549 * 14 13 12 16 16 C 1.54555 * 102.94113 * 322.53316 * 15 14 13 17 17 H 1.08996 * 117.57830 * 242.97967 * 16 15 14 18 18 C 1.52943 * 118.19703 * 87.43945 * 16 15 14 19 19 C 1.47944 * 110.99629 * 187.24593 * 13 12 11 20 20 H 1.09000 * 117.37590 * 354.64459 * 19 13 12 21 21 H 0.96996 * 119.99730 * 359.97438 * 1 2 3 22 22 H 1.09000 * 109.47318 * 299.99483 * 9 7 2 23 23 H 1.09000 * 109.47161 * 60.00114 * 9 7 2 24 24 H 1.09004 * 109.46930 * 299.99901 * 10 9 7 25 25 H 1.09004 * 109.47059 * 59.99503 * 10 9 7 26 26 H 1.09004 * 109.46785 * 299.99692 * 11 10 9 27 27 H 1.09000 * 109.47196 * 59.99588 * 11 10 9 28 28 H 1.09000 * 109.46497 * 299.99439 * 12 11 10 29 29 H 1.08999 * 109.46623 * 59.99375 * 12 11 10 30 30 H 1.09003 * 110.66532 * 278.08409 * 14 13 12 31 31 H 1.09005 * 110.66740 * 41.04207 * 14 13 12 32 32 H 1.09000 * 110.72148 * 80.89868 * 15 14 13 33 33 H 1.08998 * 110.72036 * 203.99240 * 15 14 13 34 34 H 1.08997 * 117.45532 * 15.87266 * 18 16 15 35 35 H 1.08999 * 117.45520 * 160.64487 * 18 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0465 -1.4000 5 1 1.4467 2.6526 0.7001 6 1 3.5467 1.4401 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2510 -2.4991 -0.0005 10 6 2.2453 -3.6621 -0.0005 11 6 1.4803 -4.9871 -0.0012 12 6 2.4745 -6.1501 -0.0005 13 7 1.7400 -7.4222 -0.0005 14 6 1.0611 -7.6449 -1.3027 15 6 0.8164 -9.1747 -1.3179 16 6 2.0921 -9.7360 -0.6498 17 1 2.7342 -10.3804 -1.2501 18 6 2.1151 -9.8593 0.8744 19 6 2.6614 -8.5663 0.1743 20 1 3.7300 -8.3518 0.1876 21 1 -0.4849 0.8400 0.0004 22 1 0.6248 -2.5571 0.8897 23 1 0.6240 -2.5567 -0.8903 24 1 2.8719 -3.6043 -0.8906 25 1 2.8720 -3.6043 0.8894 26 1 0.8534 -5.0451 0.8887 27 1 0.8539 -5.0446 -0.8914 28 1 3.1017 -6.0922 -0.8901 29 1 3.1006 -6.0922 0.8899 30 1 0.1158 -7.1037 -1.3412 31 1 1.7069 -7.3478 -2.1290 32 1 -0.0685 -9.4296 -0.7346 33 1 0.7207 -9.5398 -2.3404 34 1 1.1607 -9.8017 1.3978 35 1 2.8510 -10.5333 1.3130 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000687776841.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:54:23 Heat of formation + Delta-G solvation = 14.783583 kcal Electronic energy + Delta-G solvation = -13365.067045 eV Core-core repulsion = 11170.132573 eV Total energy + Delta-G solvation = -2194.934472 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 209.148 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -39.67522 -35.41226 -33.33223 -31.73206 -30.34062 -27.80017 -24.45156 -23.38769 -21.56925 -20.45938 -20.32701 -19.75581 -16.37339 -16.14146 -15.19585 -14.89997 -14.43883 -13.86895 -13.45681 -13.13929 -12.69464 -12.42336 -12.12044 -11.81108 -11.41496 -11.27355 -11.16339 -10.91712 -10.51324 -10.48004 -10.34796 -10.26898 -10.05802 -9.58218 -9.22366 -8.97092 -8.30090 -8.19097 -5.95108 -3.97250 3.34537 3.36738 3.40519 3.44206 3.95837 4.49862 4.58134 4.66061 4.89999 5.10955 5.15918 5.32681 5.39308 5.40879 5.57311 5.61297 5.69248 5.76502 5.89242 5.94391 5.99439 6.10369 6.20505 6.31742 6.54717 6.83850 6.98867 7.01556 7.12877 7.29455 7.74219 7.90484 8.06251 8.49082 9.10285 9.66454 11.16304 Molecular weight = 209.15amu Principal moments of inertia in cm(-1) A = 0.083247 B = 0.004690 C = 0.004576 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 336.266477 B = 5968.375095 C = 6117.447751 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.056 3.944 3 Si 0.891 3.109 4 H -0.281 1.281 5 H -0.286 1.286 6 H -0.274 1.274 7 C -0.520 4.520 8 H 0.054 0.946 9 C 0.021 3.979 10 C -0.109 4.109 11 C -0.112 4.112 12 C 0.051 3.949 13 N -0.495 5.495 14 C 0.037 3.963 15 C -0.096 4.096 16 C -0.181 4.181 17 H 0.107 0.893 18 C -0.141 4.141 19 C -0.012 4.012 20 H 0.110 0.890 21 H 0.260 0.740 22 H 0.016 0.984 23 H 0.014 0.986 24 H 0.044 0.956 25 H 0.047 0.953 26 H 0.064 0.936 27 H 0.054 0.946 28 H 0.032 0.968 29 H 0.072 0.928 30 H 0.086 0.914 31 H 0.046 0.954 32 H 0.074 0.926 33 H 0.073 0.927 34 H 0.097 0.903 35 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.710 -18.235 -1.534 18.672 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.145 4.145 3 Si 0.719 3.281 4 H -0.207 1.207 5 H -0.212 1.212 6 H -0.199 1.199 7 C -0.558 4.558 8 H 0.072 0.928 9 C -0.016 4.016 10 C -0.147 4.147 11 C -0.150 4.150 12 C -0.077 4.077 13 N -0.218 5.218 14 C -0.090 4.090 15 C -0.134 4.134 16 C -0.200 4.200 17 H 0.125 0.875 18 C -0.179 4.179 19 C -0.121 4.121 20 H 0.128 0.872 21 H 0.069 0.931 22 H 0.034 0.966 23 H 0.033 0.967 24 H 0.063 0.937 25 H 0.065 0.935 26 H 0.083 0.917 27 H 0.073 0.927 28 H 0.051 0.949 29 H 0.091 0.909 30 H 0.105 0.895 31 H 0.064 0.936 32 H 0.093 0.907 33 H 0.092 0.908 34 H 0.116 0.884 35 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 3.185 -18.047 -1.117 18.360 hybrid contribution 1.102 0.972 -0.695 1.626 sum 4.287 -17.075 -1.813 17.698 Atomic orbital electron populations 1.69970 1.06050 1.26492 1.51075 1.25032 0.94837 0.99209 0.95438 0.86611 0.79866 0.83577 0.78046 1.20720 1.21230 1.19904 1.21297 0.93011 0.91229 1.50277 0.92785 1.19092 0.94031 0.91323 0.97156 1.21602 0.99098 0.94009 1.00027 1.21624 0.97820 0.93491 1.02024 1.22374 0.96120 0.88710 1.00495 1.64198 1.26189 1.00980 1.30430 1.23507 0.99658 0.95482 0.90328 1.22114 0.96573 0.94464 1.00261 1.23616 1.00004 1.02697 0.93689 0.87541 1.23680 1.02885 0.97854 0.93454 1.24188 0.95379 0.86327 1.06252 0.87225 0.93064 0.96588 0.96747 0.93739 0.93450 0.91701 0.92704 0.94925 0.90944 0.89533 0.93564 0.90715 0.90834 0.88435 0.88431 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.57 13.29 55.43 0.74 -26.83 16 2 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 3 Si 0.89 22.05 29.54 -169.99 -5.02 17.03 16 4 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 5 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 6 H -0.27 -6.63 7.11 56.52 0.40 -6.23 16 7 C -0.52 -15.16 9.11 -34.44 -0.31 -15.47 16 8 H 0.05 1.53 7.74 -52.49 -0.41 1.12 16 9 C 0.02 0.56 4.97 -27.88 -0.14 0.42 16 10 C -0.11 -2.33 5.15 -26.73 -0.14 -2.46 16 11 C -0.11 -2.01 5.27 -26.73 -0.14 -2.15 16 12 C 0.05 0.77 4.81 -3.83 -0.02 0.75 16 13 N -0.49 -6.97 5.23 -220.09 -1.15 -8.12 16 14 C 0.04 0.47 5.81 -1.90 -0.01 0.46 16 15 C -0.10 -1.00 6.84 -24.89 -0.17 -1.17 16 16 C -0.18 -1.84 6.91 -89.31 -0.62 -2.46 16 17 H 0.11 0.94 8.14 -51.93 -0.42 0.51 16 18 C -0.14 -1.41 10.44 -24.67 -0.26 -1.67 16 19 C -0.01 -0.15 6.66 -64.53 -0.43 -0.58 16 20 H 0.11 1.23 7.98 -51.93 -0.41 0.82 16 21 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 22 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 23 H 0.01 0.40 8.14 -51.93 -0.42 -0.02 16 24 H 0.04 0.93 8.14 -51.93 -0.42 0.50 16 25 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 26 H 0.06 1.22 8.14 -51.93 -0.42 0.79 16 27 H 0.05 0.99 7.25 -51.93 -0.38 0.61 16 28 H 0.03 0.49 7.90 -51.93 -0.41 0.08 16 29 H 0.07 1.08 8.11 -51.93 -0.42 0.66 16 30 H 0.09 1.12 7.76 -51.93 -0.40 0.72 16 31 H 0.05 0.58 7.85 -51.93 -0.41 0.18 16 32 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 33 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 34 H 0.10 1.03 8.14 -51.93 -0.42 0.61 16 35 H 0.10 0.79 8.14 -51.93 -0.42 0.37 16 LS Contribution 285.14 15.07 4.30 4.30 Total: -1.00 -30.71 285.14 -9.67 -40.38 By element: Atomic # 1 Polarization: 2.23 SS G_CDS: -6.20 Total: -3.98 kcal Atomic # 6 Polarization: -20.45 SS G_CDS: -2.33 Total: -22.78 kcal Atomic # 7 Polarization: -34.54 SS G_CDS: -0.42 Total: -34.95 kcal Atomic # 14 Polarization: 22.05 SS G_CDS: -5.02 Total: 17.03 kcal Total LS contribution 4.30 Total: 4.30 kcal Total: -30.71 -9.67 -40.38 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000687776841.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.167 kcal (2) G-P(sol) polarization free energy of solvation -30.708 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.458 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.675 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.383 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.784 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds