Wall clock time and date at job start Mon Mar 30 2020 02:43:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86805 * 120.00321 * 2 1 4 4 H 1.48493 * 109.47111 * 179.97438 * 3 2 1 5 5 H 1.48502 * 109.46932 * 299.99802 * 3 2 1 6 6 H 1.48506 * 109.46988 * 59.99795 * 3 2 1 7 7 C 1.37873 * 119.99999 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00616 * 180.02562 * 7 2 1 9 9 C 1.50703 * 119.99956 * 359.97438 * 7 2 1 10 10 C 1.53003 * 109.47366 * 179.97438 * 9 7 2 11 11 C 1.52997 * 109.46981 * 180.02562 * 10 9 7 12 12 N 1.46902 * 109.46777 * 180.02562 * 11 10 9 13 13 C 1.46899 * 110.99789 * 180.02562 * 12 11 10 14 14 C 1.53003 * 109.47063 * 180.02562 * 13 12 11 15 15 H 1.09004 * 110.43708 * 52.64921 * 14 13 12 16 16 C 1.51103 * 110.38797 * 290.30358 * 14 13 12 17 17 C 1.30524 * 111.10657 * 224.74968 * 16 14 13 18 18 C 1.51097 * 111.10136 * 0.02562 * 17 16 14 19 19 C 1.54629 * 104.73078 * 16.43361 * 18 17 16 20 20 H 0.97005 * 119.99538 * 0.02562 * 1 2 3 21 21 H 1.09001 * 109.46867 * 60.00585 * 9 7 2 22 22 H 1.08993 * 109.47454 * 300.00403 * 9 7 2 23 23 H 1.09001 * 109.46520 * 60.00531 * 10 9 7 24 24 H 1.08993 * 109.47292 * 300.00660 * 10 9 7 25 25 H 1.09001 * 109.47235 * 60.00755 * 11 10 9 26 26 H 1.08993 * 109.47473 * 300.00336 * 11 10 9 27 27 H 1.00899 * 111.00101 * 303.95908 * 12 11 10 28 28 H 1.09001 * 109.47105 * 60.00552 * 13 12 11 29 29 H 1.09004 * 109.47503 * 299.99675 * 13 12 11 30 30 H 1.08003 * 124.44720 * 44.72657 * 16 14 13 31 31 H 1.07994 * 124.44771 * 179.97438 * 17 16 14 32 32 H 1.09006 * 110.38356 * 257.62127 * 18 17 16 33 33 H 1.09002 * 110.48283 * 135.29695 * 18 17 16 34 34 H 1.09000 * 111.03845 * 217.34109 * 19 18 17 35 35 H 1.08997 * 111.07242 * 93.41461 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7091 1.3463 0.0006 5 1 1.8905 2.3964 -1.2126 6 1 1.8905 2.3965 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4991 0.0017 10 6 2.2452 -3.6621 0.0015 11 6 1.4801 -4.9871 0.0020 12 7 2.4347 -6.1037 0.0024 13 6 1.7343 -7.3950 0.0023 14 6 2.7592 -8.5310 0.0033 15 1 3.4737 -8.3983 0.8158 16 6 3.4776 -8.5930 -1.3245 17 6 3.5695 -9.8228 -1.7522 18 6 2.9271 -10.7859 -0.7812 19 6 2.0471 -9.8981 0.1290 20 1 -0.4850 0.8401 -0.0004 21 1 0.6240 -2.5575 -0.8881 22 1 0.6246 -2.5563 0.8918 23 1 2.8724 -3.6040 0.8910 24 1 2.8712 -3.6048 -0.8889 25 1 0.8531 -5.0450 -0.8878 26 1 0.8538 -5.0447 0.8921 27 1 3.0696 -6.0369 -0.7790 28 1 1.1097 -7.4695 -0.8879 29 1 1.1091 -7.4694 0.8921 30 1 3.8640 -7.7327 -1.8509 31 1 4.0419 -10.1136 -2.6788 32 1 3.6893 -11.2958 -0.1919 33 1 2.3118 -11.5110 -1.3139 34 1 2.0647 -10.2549 1.1588 35 1 1.0253 -9.8434 -0.2465 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000711729519.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:43:14 Heat of formation + Delta-G solvation = -27.415853 kcal Electronic energy + Delta-G solvation = -13078.226538 eV Core-core repulsion = 10881.462161 eV Total energy + Delta-G solvation = -2196.764377 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 209.148 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -39.89517 -37.43411 -35.41001 -33.27349 -30.50901 -29.69898 -27.69088 -24.88076 -23.51735 -22.06821 -21.23666 -19.43808 -18.49261 -17.21630 -16.91600 -16.54900 -15.98486 -15.36557 -15.03809 -14.54956 -14.07509 -13.59060 -13.47712 -12.96092 -12.76068 -12.69509 -12.64124 -12.48892 -12.32951 -12.07056 -11.89497 -11.69598 -11.50616 -11.34772 -11.03101 -10.56586 -9.78599 -9.38016 -8.20794 -6.32033 1.39075 1.39990 1.40519 1.54310 2.40912 3.12259 3.22835 3.72793 3.80501 4.07684 4.24030 4.30251 4.39023 4.47168 4.60632 4.67178 4.70248 4.81859 4.95336 5.00054 5.00865 5.05433 5.12236 5.22530 5.27507 5.42189 5.51325 5.64950 5.73680 5.84870 5.99579 6.08027 6.26637 6.47741 6.84958 7.37345 8.91467 Molecular weight = 209.15amu Principal moments of inertia in cm(-1) A = 0.088045 B = 0.004226 C = 0.004119 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 317.942806 B = 6623.855402 C = 6796.787228 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.003 4.003 3 Si 0.968 3.032 4 H -0.262 1.262 5 H -0.277 1.277 6 H -0.277 1.277 7 C -0.543 4.543 8 H 0.059 0.941 9 C 0.024 3.976 10 C -0.093 4.093 11 C 0.071 3.929 12 N -0.692 5.692 13 C 0.069 3.931 14 C -0.064 4.064 15 H 0.082 0.918 16 C -0.179 4.179 17 C -0.169 4.169 18 C -0.100 4.100 19 C -0.120 4.120 20 H 0.264 0.736 21 H -0.009 1.009 22 H -0.008 1.008 23 H 0.053 0.947 24 H 0.050 0.950 25 H 0.021 0.979 26 H 0.061 0.939 27 H 0.342 0.658 28 H 0.026 0.974 29 H 0.070 0.930 30 H 0.119 0.881 31 H 0.134 0.866 32 H 0.083 0.917 33 H 0.080 0.920 34 H 0.083 0.917 35 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.658 -19.885 -1.855 20.758 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.200 4.200 3 Si 0.792 3.208 4 H -0.186 1.186 5 H -0.202 1.202 6 H -0.203 1.203 7 C -0.581 4.581 8 H 0.078 0.922 9 C -0.014 4.014 10 C -0.131 4.131 11 C -0.058 4.058 12 N -0.323 5.323 13 C -0.061 4.061 14 C -0.083 4.083 15 H 0.101 0.899 16 C -0.197 4.197 17 C -0.187 4.187 18 C -0.137 4.137 19 C -0.158 4.158 20 H 0.073 0.927 21 H 0.009 0.991 22 H 0.010 0.990 23 H 0.071 0.929 24 H 0.068 0.932 25 H 0.039 0.961 26 H 0.080 0.920 27 H 0.160 0.840 28 H 0.044 0.956 29 H 0.088 0.912 30 H 0.137 0.863 31 H 0.152 0.848 32 H 0.101 0.899 33 H 0.098 0.902 34 H 0.102 0.898 35 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 5.590 -19.781 -1.160 20.588 hybrid contribution -0.266 1.170 -0.975 1.546 sum 5.325 -18.611 -2.135 19.475 Atomic orbital electron populations 1.70109 1.07836 1.27743 1.51784 1.26018 0.95819 1.03487 0.94684 0.85359 0.79040 0.78558 0.77846 1.18589 1.20239 1.20277 1.21732 0.93562 0.92396 1.50429 0.92226 1.18987 0.94449 0.93166 0.94774 1.21379 0.98030 0.92935 1.00713 1.21841 0.94049 0.90397 0.99558 1.60530 1.19967 1.01654 1.50183 1.22003 0.95658 0.88225 1.00167 1.21060 0.96371 0.94394 0.96434 0.89948 1.23387 1.00932 0.98196 0.97176 1.23519 1.00373 0.95079 0.99698 1.21394 0.98611 0.97529 0.96144 1.22534 0.98998 0.93364 1.00853 0.92739 0.99090 0.98983 0.92860 0.93157 0.96102 0.92003 0.83967 0.95592 0.91164 0.86308 0.84797 0.89887 0.90156 0.89797 0.91000 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.97 13.29 21.45 0.28 -57.68 16 2 C 0.00 -0.15 5.46 84.65 0.46 0.31 16 3 Si 0.97 45.06 29.54 68.60 2.03 47.09 16 4 H -0.26 -11.64 7.11 99.48 0.71 -10.94 16 5 H -0.28 -12.48 7.11 99.48 0.71 -11.78 16 6 H -0.28 -12.53 7.11 99.48 0.71 -11.83 16 7 C -0.54 -31.89 9.11 25.60 0.23 -31.66 16 8 H 0.06 3.37 7.74 -2.91 -0.02 3.35 16 9 C 0.02 1.31 4.97 29.85 0.15 1.45 16 10 C -0.09 -4.00 5.41 30.59 0.17 -3.83 16 11 C 0.07 2.56 5.69 86.30 0.49 3.05 16 12 N -0.69 -20.71 6.50 -513.88 -3.34 -24.05 16 13 C 0.07 1.71 5.06 86.30 0.44 2.15 16 14 C -0.06 -1.33 3.14 -10.85 -0.03 -1.36 16 15 H 0.08 1.84 8.14 -2.38 -0.02 1.82 16 16 C -0.18 -3.60 9.63 26.27 0.25 -3.35 16 17 C -0.17 -2.88 10.78 26.26 0.28 -2.59 16 18 C -0.10 -1.45 6.81 30.53 0.21 -1.24 16 19 C -0.12 -1.96 6.71 31.71 0.21 -1.75 16 20 H 0.26 15.26 8.31 -92.70 -0.77 14.49 16 21 H -0.01 -0.54 8.14 -2.39 -0.02 -0.56 16 22 H -0.01 -0.48 8.14 -2.39 -0.02 -0.50 16 23 H 0.05 2.32 8.14 -2.39 -0.02 2.30 16 24 H 0.05 2.09 8.14 -2.39 -0.02 2.07 16 25 H 0.02 0.76 8.14 -2.39 -0.02 0.74 16 26 H 0.06 2.29 8.14 -2.39 -0.02 2.27 16 27 H 0.34 9.58 7.64 -89.69 -0.69 8.90 16 28 H 0.03 0.66 8.13 -2.39 -0.02 0.64 16 29 H 0.07 1.75 8.14 -2.38 -0.02 1.73 16 30 H 0.12 2.41 7.43 -2.91 -0.02 2.38 16 31 H 0.13 1.88 8.06 -2.91 -0.02 1.85 16 32 H 0.08 1.07 8.14 -2.38 -0.02 1.05 16 33 H 0.08 0.98 8.14 -2.39 -0.02 0.96 16 34 H 0.08 1.19 8.14 -2.39 -0.02 1.17 16 35 H 0.07 1.17 7.91 -2.39 -0.02 1.15 16 Total: -1.00 -64.38 288.19 2.17 -62.21 By element: Atomic # 1 Polarization: 10.92 SS G_CDS: 0.35 Total: 11.26 kcal Atomic # 6 Polarization: -41.69 SS G_CDS: 2.86 Total: -38.83 kcal Atomic # 7 Polarization: -78.68 SS G_CDS: -3.06 Total: -81.73 kcal Atomic # 14 Polarization: 45.06 SS G_CDS: 2.03 Total: 47.09 kcal Total: -64.38 2.17 -62.21 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000711729519.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.793 kcal (2) G-P(sol) polarization free energy of solvation -64.384 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.591 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.175 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.209 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.416 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds