Wall clock time and date at job start Mon Mar 30 2020 02:16:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 120.00321 * 2 1 4 4 H 1.48500 * 109.47353 * 89.99665 * 3 2 1 5 5 H 1.48501 * 109.47293 * 210.00115 * 3 2 1 6 6 H 1.48504 * 109.46680 * 329.99913 * 3 2 1 7 7 C 1.37885 * 119.99913 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99535 * 179.97438 * 7 2 1 9 9 C 1.50694 * 119.99902 * 359.97438 * 7 2 1 10 10 C 1.53001 * 109.47168 * 180.02562 * 9 7 2 11 11 C 1.53000 * 109.47355 * 180.02562 * 10 9 7 12 12 N 1.46893 * 109.47186 * 179.97438 * 11 10 9 13 13 C 1.46903 * 111.00119 * 179.97438 * 12 11 10 14 14 H 1.09000 * 115.54545 * 9.33690 * 13 12 11 15 15 C 1.52994 * 117.50245 * 223.62139 * 13 12 11 16 16 C 1.53002 * 60.00350 * 252.51329 * 15 13 12 17 17 H 1.08992 * 117.52027 * 107.47640 * 16 15 13 18 18 C 1.52996 * 117.49732 * 252.51167 * 16 15 13 19 19 C 1.53004 * 117.49710 * 197.36266 * 18 16 15 20 20 C 1.53005 * 117.49634 * 128.70696 * 18 16 15 21 21 H 0.97001 * 119.99646 * 359.97438 * 1 2 3 22 22 H 1.09007 * 109.47443 * 300.00164 * 9 7 2 23 23 H 1.09003 * 109.47615 * 60.00205 * 9 7 2 24 24 H 1.09002 * 109.46926 * 299.99825 * 10 9 7 25 25 H 1.08998 * 109.46837 * 60.00021 * 10 9 7 26 26 H 1.09002 * 109.46807 * 299.99709 * 11 10 9 27 27 H 1.08992 * 109.47112 * 59.99408 * 11 10 9 28 28 H 1.00908 * 110.99986 * 56.04657 * 12 11 10 29 29 H 1.09003 * 117.49850 * 0.02562 * 15 13 12 30 30 H 1.09000 * 117.49903 * 145.02487 * 15 13 12 31 31 H 1.08992 * 115.55340 * 343.03877 * 18 16 15 32 32 H 1.08992 * 117.49783 * 0.02562 * 19 18 16 33 33 H 1.09001 * 117.49574 * 145.02478 * 19 18 16 34 34 H 1.09006 * 117.49396 * 214.97712 * 20 18 16 35 35 H 1.09003 * 117.50071 * 359.97432 * 20 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 1.4001 5 1 3.5468 1.4401 -0.7001 6 1 1.4467 2.6526 -0.7001 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 6 2.2453 -3.6621 -0.0005 11 6 1.4803 -4.9871 -0.0012 12 7 2.4348 -6.1037 -0.0018 13 6 1.7345 -7.3950 -0.0018 14 1 0.6573 -7.3456 -0.1609 15 6 2.2616 -8.4846 0.9339 16 6 2.4788 -8.6023 -0.5760 17 1 3.4878 -8.4382 -0.9540 18 6 1.6540 -9.6480 -1.3289 19 6 2.1346 -10.0571 -2.7227 20 6 0.8869 -9.1838 -2.5687 21 1 -0.4850 0.8401 0.0004 22 1 0.6247 -2.5571 0.8897 23 1 0.6240 -2.5568 -0.8903 24 1 2.8719 -3.6044 -0.8906 25 1 2.8719 -3.6044 0.8894 26 1 0.8533 -5.0451 0.8886 27 1 0.8539 -5.0446 -0.8913 28 1 3.0698 -6.0370 0.7796 29 1 3.1279 -8.2432 1.5500 30 1 1.5312 -9.1523 1.3909 31 1 1.1920 -10.4171 -0.7100 32 1 3.0385 -9.5816 -3.1030 33 1 1.9884 -11.0953 -3.0208 34 1 -0.0796 -9.6480 -2.7656 35 1 0.9695 -8.1333 -2.8477 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000716538053.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:16:04 Heat of formation + Delta-G solvation = 10.325131 kcal Electronic energy + Delta-G solvation = -13039.136898 eV Core-core repulsion = 10844.009094 eV Total energy + Delta-G solvation = -2195.127805 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 209.148 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -39.75024 -37.44878 -35.99646 -34.49688 -31.99885 -27.91158 -24.81719 -24.14226 -23.32397 -22.42815 -21.86118 -20.60488 -18.49703 -16.83037 -16.73827 -16.52092 -16.27184 -15.58037 -14.95657 -14.34779 -14.05804 -13.77202 -13.51945 -13.12028 -12.80556 -12.50073 -12.47347 -12.34502 -12.25824 -11.93297 -11.75068 -11.54928 -11.39888 -11.15720 -10.94777 -10.56446 -10.55671 -9.12510 -8.20662 -6.31935 1.40052 1.41731 1.53134 2.40847 2.63833 3.05651 3.12434 3.19347 3.76975 3.98084 4.02791 4.16735 4.22222 4.29607 4.36874 4.50301 4.58257 4.67453 4.76705 4.82198 4.89438 4.99493 5.05612 5.13695 5.22407 5.28104 5.30422 5.39386 5.51283 5.73340 5.84674 6.08538 6.26389 6.44079 6.84831 7.37390 8.91396 Molecular weight = 209.15amu Principal moments of inertia in cm(-1) A = 0.061140 B = 0.004447 C = 0.004357 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 457.858144 B = 6294.770362 C = 6425.503387 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.001 4.001 3 Si 0.967 3.033 4 H -0.271 1.271 5 H -0.264 1.264 6 H -0.281 1.281 7 C -0.545 4.545 8 H 0.060 0.940 9 C 0.025 3.975 10 C -0.093 4.093 11 C 0.076 3.924 12 N -0.663 5.663 13 C 0.014 3.986 14 H 0.101 0.899 15 C -0.182 4.182 16 C -0.112 4.112 17 H 0.100 0.900 18 C -0.127 4.127 19 C -0.170 4.170 20 C -0.185 4.185 21 H 0.264 0.736 22 H -0.008 1.008 23 H -0.009 1.009 24 H 0.051 0.949 25 H 0.052 0.948 26 H 0.026 0.974 27 H 0.059 0.941 28 H 0.345 0.655 29 H 0.102 0.898 30 H 0.108 0.892 31 H 0.116 0.884 32 H 0.090 0.910 33 H 0.109 0.891 34 H 0.103 0.897 35 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.880 -18.977 -0.787 19.385 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.199 4.199 3 Si 0.791 3.209 4 H -0.196 1.196 5 H -0.188 1.188 6 H -0.206 1.206 7 C -0.583 4.583 8 H 0.078 0.922 9 C -0.013 4.013 10 C -0.131 4.131 11 C -0.053 4.053 12 N -0.293 5.293 13 C -0.097 4.097 14 H 0.119 0.881 15 C -0.221 4.221 16 C -0.132 4.132 17 H 0.118 0.882 18 C -0.145 4.145 19 C -0.207 4.207 20 C -0.223 4.223 21 H 0.073 0.927 22 H 0.010 0.990 23 H 0.009 0.991 24 H 0.070 0.930 25 H 0.071 0.929 26 H 0.044 0.956 27 H 0.078 0.922 28 H 0.165 0.835 29 H 0.120 0.880 30 H 0.126 0.874 31 H 0.134 0.866 32 H 0.108 0.892 33 H 0.127 0.873 34 H 0.121 0.879 35 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 3.824 -18.832 -1.474 19.273 hybrid contribution -0.261 1.081 0.835 1.391 sum 3.562 -17.751 -0.639 18.116 Atomic orbital electron populations 1.70101 1.07834 1.27813 1.51684 1.26008 0.95800 1.03446 0.94651 0.85420 0.78638 0.78272 0.78560 1.19634 1.18774 1.20646 1.21702 0.93561 0.92406 1.50593 0.92225 1.18974 0.94423 0.93095 0.94806 1.21385 0.98075 0.92885 1.00762 1.21842 0.93910 0.89920 0.99647 1.60209 1.19262 1.00437 1.49414 1.22551 0.96567 0.85355 1.05192 0.88073 1.23606 1.03754 1.02286 0.92449 1.22005 0.99528 0.96698 0.94935 0.88240 1.21797 1.02558 1.00022 0.90114 1.23045 0.98158 1.00802 0.98718 1.22989 0.96802 1.00055 1.02405 0.92731 0.98961 0.99057 0.93004 0.92912 0.95560 0.92202 0.83508 0.88002 0.87413 0.86596 0.89167 0.87270 0.87862 0.90233 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.78 13.29 21.45 0.28 -57.50 16 2 C 0.00 -0.08 5.46 84.66 0.46 0.38 16 3 Si 0.97 44.90 29.54 68.60 2.03 46.92 16 4 H -0.27 -12.09 7.11 99.48 0.71 -11.39 16 5 H -0.26 -11.72 7.11 99.48 0.71 -11.01 16 6 H -0.28 -12.71 7.11 99.48 0.71 -12.01 16 7 C -0.54 -31.83 9.11 25.60 0.23 -31.60 16 8 H 0.06 3.35 7.74 -2.91 -0.02 3.32 16 9 C 0.02 1.34 4.97 29.85 0.15 1.49 16 10 C -0.09 -3.97 5.41 30.59 0.17 -3.81 16 11 C 0.08 2.71 5.54 86.30 0.48 3.19 16 12 N -0.66 -19.71 6.78 -491.58 -3.33 -23.04 16 13 C 0.01 0.35 5.96 44.91 0.27 0.62 16 14 H 0.10 2.65 7.90 -2.39 -0.02 2.64 16 15 C -0.18 -3.54 9.95 30.59 0.30 -3.24 16 16 C -0.11 -2.40 5.80 -10.79 -0.06 -2.47 16 17 H 0.10 2.29 8.14 -2.39 -0.02 2.28 16 18 C -0.13 -2.34 5.87 -10.79 -0.06 -2.40 16 19 C -0.17 -2.90 10.25 30.62 0.31 -2.58 16 20 C -0.19 -3.59 10.18 30.62 0.31 -3.28 16 21 H 0.26 15.27 8.31 -92.71 -0.77 14.50 16 22 H -0.01 -0.46 8.14 -2.38 -0.02 -0.48 16 23 H -0.01 -0.52 8.14 -2.39 -0.02 -0.54 16 24 H 0.05 2.24 8.14 -2.39 -0.02 2.22 16 25 H 0.05 2.15 8.14 -2.39 -0.02 2.14 16 26 H 0.03 0.93 8.14 -2.39 -0.02 0.91 16 27 H 0.06 2.23 8.14 -2.39 -0.02 2.21 16 28 H 0.35 9.39 8.52 -89.69 -0.76 8.63 16 29 H 0.10 1.85 8.09 -2.39 -0.02 1.83 16 30 H 0.11 1.78 8.14 -2.39 -0.02 1.76 16 31 H 0.12 1.83 8.14 -2.39 -0.02 1.81 16 32 H 0.09 1.61 8.14 -2.39 -0.02 1.59 16 33 H 0.11 1.46 8.14 -2.39 -0.02 1.44 16 34 H 0.10 1.71 8.14 -2.38 -0.02 1.69 16 35 H 0.08 1.85 8.14 -2.39 -0.02 1.83 16 Total: -1.00 -63.77 295.82 1.81 -61.96 By element: Atomic # 1 Polarization: 15.09 SS G_CDS: 0.27 Total: 15.36 kcal Atomic # 6 Polarization: -46.27 SS G_CDS: 2.56 Total: -43.71 kcal Atomic # 7 Polarization: -77.49 SS G_CDS: -3.05 Total: -80.54 kcal Atomic # 14 Polarization: 44.90 SS G_CDS: 2.03 Total: 46.92 kcal Total: -63.77 1.81 -61.96 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000716538053.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.288 kcal (2) G-P(sol) polarization free energy of solvation -63.773 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.515 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.810 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.962 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.325 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds