Wall clock time and date at job start Mon Mar 30 2020 02:17:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86802 * 119.99681 * 2 1 4 4 H 1.48496 * 109.47078 * 269.99952 * 3 2 1 5 5 H 1.48500 * 109.46993 * 29.99930 * 3 2 1 6 6 H 1.48500 * 109.47019 * 150.00114 * 3 2 1 7 7 C 1.37873 * 120.00035 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99820 * 180.02562 * 7 2 1 9 9 C 1.50702 * 120.00219 * 359.97438 * 7 2 1 10 10 C 1.52996 * 109.47252 * 180.02562 * 9 7 2 11 11 N 1.46896 * 109.47098 * 180.02562 * 10 9 7 12 12 C 1.46899 * 111.00113 * 173.91718 * 11 10 9 13 13 C 1.52998 * 112.85492 * 166.39330 * 12 11 10 14 14 C 1.53011 * 117.49344 * 18.29239 * 13 12 11 15 15 C 1.53002 * 117.49601 * 309.67319 * 13 12 11 16 16 C 1.53782 * 113.61359 * 35.08789 * 12 11 10 17 17 C 1.53776 * 87.08485 * 220.01682 * 16 12 11 18 18 C 1.53782 * 113.61395 * 297.59505 * 12 11 10 19 19 H 0.97001 * 120.00288 * 0.02562 * 1 2 3 20 20 H 1.08996 * 109.46762 * 60.00410 * 9 7 2 21 21 H 1.08997 * 109.47006 * 300.00623 * 9 7 2 22 22 H 1.09004 * 109.46759 * 60.00179 * 10 9 7 23 23 H 1.08997 * 109.47594 * 300.00795 * 10 9 7 24 24 H 1.00897 * 111.00339 * 49.96420 * 11 10 9 25 25 H 1.08992 * 115.55564 * 163.99620 * 13 12 11 26 26 H 1.08997 * 117.49796 * 359.97438 * 14 13 12 27 27 H 1.08999 * 117.49431 * 145.02408 * 14 13 12 28 28 H 1.09002 * 117.49752 * 214.97373 * 15 13 12 29 29 H 1.08994 * 117.50029 * 359.97438 * 15 13 12 30 30 H 1.09001 * 113.61640 * 334.56951 * 16 12 11 31 31 H 1.09006 * 113.61229 * 105.47187 * 16 12 11 32 32 H 1.08995 * 113.61789 * 270.88847 * 17 16 12 33 33 H 1.08999 * 113.61538 * 139.97455 * 17 16 12 34 34 H 1.09005 * 113.61098 * 254.52366 * 18 12 11 35 35 H 1.08996 * 113.61433 * 25.34265 * 18 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4465 2.6527 0.7000 6 1 3.5467 1.4403 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0001 9 6 1.2511 -2.4992 -0.0005 10 6 2.2453 -3.6620 -0.0005 11 7 1.5109 -4.9342 -0.0012 12 6 2.4287 -6.0719 -0.1465 13 6 1.7678 -7.4136 0.1760 14 6 0.2386 -7.4673 0.1697 15 6 1.0008 -7.5242 1.4952 16 6 3.7817 -5.8654 0.5547 17 6 4.4288 -6.5383 -0.6672 18 6 3.2055 -6.0711 -1.4737 19 1 -0.4850 0.8400 -0.0004 20 1 0.6242 -2.5567 -0.8903 21 1 0.6247 -2.5571 0.8896 22 1 2.8720 -3.6042 0.8895 23 1 2.8721 -3.6043 -0.8904 24 1 0.8056 -4.9442 -0.7226 25 1 2.3041 -8.2971 -0.1700 26 1 -0.2963 -6.5468 -0.0637 27 1 -0.2312 -8.3864 -0.1805 28 1 1.0323 -8.4807 2.0170 29 1 0.9674 -6.6414 2.1335 30 1 4.0568 -4.8173 0.6728 31 1 3.8880 -6.4383 1.4759 32 1 4.5058 -7.6219 -0.5793 33 1 5.3623 -6.0705 -0.9799 34 1 2.8467 -6.8101 -2.1901 35 1 3.3218 -5.0794 -1.9109 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000717892967.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:17:00 Heat of formation + Delta-G solvation = 20.442490 kcal Electronic energy + Delta-G solvation = -13966.789704 eV Core-core repulsion = 11772.100620 eV Total energy + Delta-G solvation = -2194.689083 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 209.148 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -41.10523 -36.82501 -36.00818 -34.27411 -30.76320 -26.99088 -26.53378 -24.94724 -23.19521 -22.89126 -21.95516 -19.04009 -18.39233 -17.11217 -16.87835 -16.36565 -16.13841 -15.42908 -14.86874 -14.41148 -14.19439 -13.73272 -13.39452 -12.95477 -12.91420 -12.79733 -12.37938 -12.19436 -12.13820 -11.81798 -11.49804 -11.46017 -11.31149 -11.18483 -11.01261 -10.60499 -10.57611 -9.12014 -8.22084 -6.33832 1.38721 1.40473 1.51682 2.39009 2.93833 3.11246 3.31329 3.65692 3.77853 3.83530 4.01568 4.25362 4.33443 4.40948 4.48917 4.58324 4.76044 4.82092 4.88241 4.91627 5.03184 5.07185 5.09601 5.13830 5.25304 5.35480 5.44858 5.46374 5.56654 5.68003 5.78596 6.15013 6.33988 6.57093 6.83458 7.35636 8.90126 Molecular weight = 209.15amu Principal moments of inertia in cm(-1) A = 0.043255 B = 0.007020 C = 0.006376 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 647.161911 B = 3987.635735 C = 4390.600287 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.001 3.999 3 Si 0.967 3.033 4 H -0.271 1.271 5 H -0.281 1.281 6 H -0.263 1.263 7 C -0.545 4.545 8 H 0.059 0.941 9 C 0.032 3.968 10 C 0.088 3.912 11 N -0.680 5.680 12 C 0.116 3.884 13 C -0.124 4.124 14 C -0.175 4.175 15 C -0.166 4.166 16 C -0.143 4.143 17 C -0.122 4.122 18 C -0.173 4.173 19 H 0.264 0.736 20 H -0.011 1.011 21 H -0.008 1.008 22 H 0.058 0.942 23 H 0.020 0.980 24 H 0.335 0.665 25 H 0.126 0.874 26 H 0.081 0.919 27 H 0.108 0.892 28 H 0.108 0.892 29 H 0.076 0.924 30 H 0.071 0.929 31 H 0.074 0.926 32 H 0.101 0.899 33 H 0.069 0.931 34 H 0.077 0.923 35 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.091 -15.306 -0.898 16.498 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.197 4.197 3 Si 0.791 3.209 4 H -0.196 1.196 5 H -0.206 1.206 6 H -0.187 1.187 7 C -0.583 4.583 8 H 0.077 0.923 9 C -0.006 4.006 10 C -0.040 4.040 11 N -0.310 5.310 12 C 0.025 3.975 13 C -0.143 4.143 14 C -0.212 4.212 15 C -0.203 4.203 16 C -0.180 4.180 17 C -0.159 4.159 18 C -0.213 4.213 19 H 0.073 0.927 20 H 0.007 0.993 21 H 0.010 0.990 22 H 0.076 0.924 23 H 0.038 0.962 24 H 0.154 0.846 25 H 0.143 0.857 26 H 0.100 0.900 27 H 0.126 0.874 28 H 0.126 0.874 29 H 0.095 0.905 30 H 0.089 0.911 31 H 0.093 0.907 32 H 0.119 0.881 33 H 0.088 0.912 34 H 0.096 0.904 35 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 5.909 -15.232 -0.194 16.339 hybrid contribution 0.195 1.349 -0.919 1.644 sum 6.104 -13.884 -1.113 15.207 Atomic orbital electron populations 1.70110 1.07838 1.27826 1.51391 1.25981 0.95772 1.03391 0.94562 0.85422 0.78643 0.78278 0.78555 1.19650 1.20611 1.18738 1.21600 0.93482 0.92271 1.50982 0.92251 1.18935 0.94309 0.92538 0.94780 1.21796 0.95715 0.88001 0.98520 1.60353 1.15595 1.01807 1.53295 1.21873 0.90406 0.90133 0.95116 1.21923 0.93959 0.95725 1.02664 1.22903 0.93643 1.03015 1.01619 1.22810 1.04173 1.02668 0.90683 1.23258 0.95045 1.01105 0.98637 1.22674 0.96763 1.01277 0.95210 1.23596 0.98608 1.01232 0.97846 0.92716 0.99293 0.98958 0.92381 0.96217 0.84582 0.85655 0.89998 0.87417 0.87394 0.90522 0.91058 0.90703 0.88107 0.91220 0.90394 0.91825 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.77 13.29 21.45 0.28 -57.48 16 2 C 0.00 0.05 5.46 84.65 0.46 0.52 16 3 Si 0.97 44.87 29.54 68.60 2.03 46.90 16 4 H -0.27 -12.10 7.11 99.48 0.71 -11.39 16 5 H -0.28 -12.70 7.11 99.48 0.71 -12.00 16 6 H -0.26 -11.67 7.11 99.48 0.71 -10.96 16 7 C -0.54 -31.80 9.11 25.60 0.23 -31.56 16 8 H 0.06 3.32 7.74 -2.91 -0.02 3.29 16 9 C 0.03 1.74 5.17 29.85 0.15 1.90 16 10 C 0.09 3.83 4.42 86.30 0.38 4.21 16 11 N -0.68 -24.86 5.53 -467.59 -2.59 -27.45 16 12 C 0.12 3.34 1.39 4.05 0.01 3.34 16 13 C -0.12 -2.95 5.16 -10.79 -0.06 -3.00 16 14 C -0.17 -4.19 9.90 30.60 0.30 -3.88 16 15 C -0.17 -4.02 10.10 30.60 0.31 -3.72 16 16 C -0.14 -3.96 6.89 31.12 0.21 -3.75 16 17 C -0.12 -2.73 7.79 31.12 0.24 -2.48 16 18 C -0.17 -4.59 7.18 31.12 0.22 -4.36 16 19 H 0.26 15.32 8.31 -92.71 -0.77 14.55 16 20 H -0.01 -0.66 8.14 -2.39 -0.02 -0.68 16 21 H -0.01 -0.48 8.14 -2.39 -0.02 -0.50 16 22 H 0.06 2.55 6.45 -2.38 -0.02 2.54 16 23 H 0.02 0.85 6.26 -2.39 -0.01 0.83 16 24 H 0.34 12.37 7.79 -89.70 -0.70 11.67 16 25 H 0.13 2.39 7.90 -2.39 -0.02 2.37 16 26 H 0.08 2.33 6.74 -2.39 -0.02 2.31 16 27 H 0.11 2.07 8.14 -2.39 -0.02 2.05 16 28 H 0.11 2.07 8.14 -2.39 -0.02 2.05 16 29 H 0.08 2.27 8.14 -2.39 -0.02 2.25 16 30 H 0.07 2.30 5.58 -2.39 -0.01 2.28 16 31 H 0.07 1.92 8.10 -2.38 -0.02 1.90 16 32 H 0.10 1.79 7.94 -2.39 -0.02 1.77 16 33 H 0.07 1.50 8.14 -2.39 -0.02 1.48 16 34 H 0.08 1.81 8.10 -2.38 -0.02 1.79 16 35 H 0.06 1.96 6.41 -2.39 -0.02 1.95 16 Total: -1.00 -63.82 278.43 2.56 -61.26 By element: Atomic # 1 Polarization: 19.21 SS G_CDS: 0.36 Total: 19.57 kcal Atomic # 6 Polarization: -45.27 SS G_CDS: 2.47 Total: -42.80 kcal Atomic # 7 Polarization: -82.63 SS G_CDS: -2.30 Total: -84.93 kcal Atomic # 14 Polarization: 44.87 SS G_CDS: 2.03 Total: 46.90 kcal Total: -63.82 2.56 -61.26 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000717892967.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.705 kcal (2) G-P(sol) polarization free energy of solvation -63.821 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.884 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.558 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.262 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.442 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds