Wall clock time and date at job start Mon Mar 30 2020 02:53:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86802 * 120.00041 * 2 1 4 4 H 1.48500 * 109.47007 * 89.99989 * 3 2 1 5 5 H 1.48504 * 109.47223 * 330.00185 * 3 2 1 6 6 H 1.48499 * 109.47224 * 210.00176 * 3 2 1 7 7 C 1.37878 * 120.00232 * 180.02562 * 2 1 3 8 8 C 1.51268 * 120.84582 * 7.30908 * 7 2 1 9 9 C 1.53668 * 108.31100 * 231.38325 * 8 7 2 10 10 C 1.52956 * 109.32415 * 305.14242 * 9 8 7 11 11 H 1.08999 * 109.35834 * 303.66033 * 10 9 8 12 12 N 1.46896 * 109.41411 * 183.83103 * 10 9 8 13 13 C 1.48539 * 110.99739 * 58.65028 * 12 10 9 14 14 C 1.54935 * 103.22679 * 159.72116 * 13 12 10 15 15 C 1.54601 * 102.92239 * 322.58546 * 14 13 12 16 16 C 1.47903 * 111.00280 * 176.04581 * 12 10 9 17 17 C 1.52966 * 109.81828 * 63.72633 * 10 9 8 18 18 C 1.51265 * 120.84997 * 187.03482 * 7 2 1 19 19 H 0.96997 * 119.99817 * 175.09455 * 1 2 3 20 20 H 1.09001 * 109.62914 * 351.04646 * 8 7 2 21 21 H 1.09001 * 109.62560 * 111.61103 * 8 7 2 22 22 H 1.09000 * 109.41717 * 185.24861 * 9 8 7 23 23 H 1.09002 * 109.63380 * 65.16631 * 9 8 7 24 24 H 1.09001 * 110.66783 * 278.15546 * 13 12 10 25 25 H 1.09002 * 110.66775 * 41.28836 * 13 12 10 26 26 H 1.08995 * 110.72696 * 204.22920 * 14 13 12 27 27 H 1.09001 * 110.72381 * 80.94064 * 14 13 12 28 28 H 1.08994 * 110.31220 * 263.04225 * 15 14 13 29 29 H 1.09001 * 110.30939 * 140.87334 * 15 14 13 30 30 H 1.08997 * 109.91430 * 333.51174 * 16 12 10 31 31 H 1.09002 * 109.91475 * 94.60549 * 16 12 10 32 32 H 1.08998 * 109.48253 * 176.42219 * 17 10 9 33 33 H 1.08998 * 109.47977 * 56.37568 * 17 10 9 34 34 H 1.09003 * 109.62040 * 248.38724 * 18 7 2 35 35 H 1.08998 * 109.62893 * 8.95318 * 18 7 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 1.4001 5 1 1.4466 2.6527 -0.7000 6 1 3.5467 1.4402 -0.7001 7 6 2.0046 -1.1940 -0.0005 8 6 1.2769 -2.5098 -0.1663 9 6 1.7109 -3.4481 0.9705 10 6 3.2358 -3.5679 0.9736 11 1 3.5732 -3.9115 -0.0042 12 7 3.6475 -4.5350 1.9998 13 6 3.0383 -5.8667 1.7511 14 6 3.9527 -6.8295 2.5494 15 6 5.3593 -6.2228 2.3410 16 6 5.1106 -4.7491 1.9699 17 6 3.8623 -2.2061 1.2780 18 6 3.5086 -1.2214 0.1585 19 1 -0.4850 -0.8370 -0.0718 20 1 0.2011 -2.3423 -0.1139 21 1 1.5348 -2.9520 -1.1286 22 1 1.2692 -4.4326 0.8163 23 1 1.3759 -3.0450 1.9262 24 1 2.0179 -5.9003 2.1328 25 1 3.0607 -6.1076 0.6883 26 1 3.9030 -7.8380 2.1388 27 1 3.6849 -6.8285 3.6060 28 1 5.8760 -6.7352 1.5296 29 1 5.9398 -6.2884 3.2613 30 1 5.4949 -4.5480 0.9699 31 1 5.5966 -4.0938 2.6929 32 1 4.9455 -2.3103 1.3417 33 1 3.4764 -1.8322 2.2263 34 1 3.9695 -1.5465 -0.7743 35 1 3.8674 -0.2258 0.4197 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000885364624.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:53:32 Heat of formation + Delta-G solvation = -18.082231 kcal Electronic energy + Delta-G solvation = -14458.660397 eV Core-core repulsion = 12262.300757 eV Total energy + Delta-G solvation = -2196.359641 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 209.148 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -39.00034 -36.06954 -32.69099 -30.34127 -29.80742 -28.36911 -26.20880 -22.41362 -21.81169 -20.48041 -20.08682 -19.05366 -16.55776 -15.81812 -15.57146 -14.08097 -13.81207 -13.68888 -13.02162 -12.78141 -12.59379 -12.31310 -12.11144 -11.29180 -11.25212 -11.14595 -10.96910 -10.67248 -10.61923 -10.47164 -10.19032 -10.02937 -9.93652 -9.39584 -9.08625 -8.44307 -8.18670 -7.95510 -6.38857 -3.95648 3.42930 3.46499 3.62479 4.39005 4.51318 4.85236 4.87115 5.09246 5.30217 5.47947 5.63974 5.76953 5.81171 5.87703 5.90368 5.93824 6.16866 6.20356 6.24270 6.30385 6.53282 6.69117 6.78022 6.86575 6.91570 6.96294 7.09284 7.28215 7.41808 7.46342 7.67509 7.70014 8.14082 8.37143 8.93190 9.66313 10.99197 Molecular weight = 209.15amu Principal moments of inertia in cm(-1) A = 0.057065 B = 0.008648 C = 0.007781 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 490.551346 B = 3237.012692 C = 3597.644112 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.909 5.909 2 C 0.033 3.967 3 Si 1.064 2.936 4 H -0.285 1.285 5 H -0.288 1.288 6 H -0.284 1.284 7 C -0.566 4.566 8 C 0.001 3.999 9 C -0.097 4.097 10 C 0.094 3.906 11 H 0.028 0.972 12 N -0.518 5.518 13 C 0.036 3.964 14 C -0.123 4.123 15 C -0.130 4.130 16 C 0.037 3.963 17 C -0.097 4.097 18 C -0.007 4.007 19 H 0.271 0.729 20 H 0.037 0.963 21 H 0.003 0.997 22 H 0.027 0.973 23 H 0.056 0.944 24 H 0.079 0.921 25 H 0.039 0.961 26 H 0.065 0.935 27 H 0.071 0.929 28 H 0.061 0.939 29 H 0.067 0.933 30 H 0.040 0.960 31 H 0.074 0.926 32 H 0.029 0.971 33 H 0.058 0.942 34 H 0.007 0.993 35 H 0.028 0.972 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.287 -9.751 3.312 13.219 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.546 5.546 2 C -0.171 4.171 3 Si 0.893 3.107 4 H -0.212 1.212 5 H -0.215 1.215 6 H -0.211 1.211 7 C -0.585 4.585 8 C -0.037 4.037 9 C -0.135 4.135 10 C -0.014 4.014 11 H 0.045 0.955 12 N -0.242 5.242 13 C -0.092 4.092 14 C -0.161 4.161 15 C -0.169 4.169 16 C -0.091 4.091 17 C -0.135 4.135 18 C -0.045 4.045 19 H 0.084 0.916 20 H 0.055 0.945 21 H 0.021 0.979 22 H 0.046 0.954 23 H 0.075 0.925 24 H 0.097 0.903 25 H 0.057 0.943 26 H 0.084 0.916 27 H 0.090 0.910 28 H 0.080 0.920 29 H 0.086 0.914 30 H 0.058 0.942 31 H 0.092 0.908 32 H 0.048 0.952 33 H 0.077 0.923 34 H 0.026 0.974 35 H 0.047 0.953 Dipole moment (debyes) X Y Z Total from point charges 7.905 -7.887 3.871 11.819 hybrid contribution 0.477 -2.022 -0.872 2.253 sum 8.382 -9.910 3.000 13.321 Atomic orbital electron populations 1.70795 1.06875 1.31043 1.45874 1.25758 0.96243 1.01871 0.93271 0.83618 0.74761 0.75227 0.77095 1.21204 1.21487 1.21070 1.21009 0.91432 0.92573 1.53511 1.19520 0.97374 0.94296 0.92471 1.21707 0.92809 0.97599 1.01368 1.21703 0.97021 0.92145 0.90486 0.95453 1.64869 1.04774 1.06960 1.47595 1.23164 0.99008 0.89148 0.97856 1.22482 0.94810 0.97975 1.00883 1.22402 0.97413 0.95803 1.01246 1.22796 0.90476 0.95672 1.00175 1.21609 0.96239 0.94655 1.00988 1.19612 0.97166 0.94394 0.93322 0.91600 0.94468 0.97909 0.95408 0.92506 0.90274 0.94285 0.91636 0.91004 0.92014 0.91428 0.94171 0.90792 0.95222 0.92340 0.97430 0.95349 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -27.35 13.66 55.43 0.76 -26.59 16 2 C 0.03 0.94 5.45 -17.82 -0.10 0.85 16 3 Si 1.06 25.41 27.44 -169.99 -4.66 20.75 16 4 H -0.29 -6.60 7.11 56.52 0.40 -6.20 16 5 H -0.29 -6.89 7.11 56.52 0.40 -6.48 16 6 H -0.28 -6.41 6.79 56.52 0.38 -6.02 16 7 C -0.57 -15.37 5.49 -98.92 -0.54 -15.91 16 8 C 0.00 0.04 6.00 -27.26 -0.16 -0.13 16 9 C -0.10 -2.15 5.14 -26.41 -0.14 -2.29 16 10 C 0.09 1.93 1.54 -67.75 -0.10 1.83 16 11 H 0.03 0.59 7.98 -51.93 -0.41 0.17 16 12 N -0.52 -9.17 5.11 -222.55 -1.14 -10.31 16 13 C 0.04 0.55 5.35 -1.90 -0.01 0.54 16 14 C -0.12 -1.51 7.06 -24.87 -0.18 -1.69 16 15 C -0.13 -1.58 6.93 -25.37 -0.18 -1.76 16 16 C 0.04 0.56 5.44 -2.75 -0.01 0.55 16 17 C -0.10 -2.09 5.24 -26.63 -0.14 -2.23 16 18 C -0.01 -0.16 5.54 -27.49 -0.15 -0.31 16 19 H 0.27 8.09 6.36 -40.82 -0.26 7.83 16 20 H 0.04 0.99 5.79 -51.93 -0.30 0.69 16 21 H 0.00 0.07 8.14 -51.93 -0.42 -0.36 16 22 H 0.03 0.56 6.71 -51.93 -0.35 0.21 16 23 H 0.06 1.35 8.14 -51.93 -0.42 0.93 16 24 H 0.08 1.22 7.57 -51.93 -0.39 0.82 16 25 H 0.04 0.61 8.01 -51.93 -0.42 0.19 16 26 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 27 H 0.07 0.86 8.14 -51.93 -0.42 0.43 16 28 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 29 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 30 H 0.04 0.63 7.64 -51.93 -0.40 0.23 16 31 H 0.07 1.10 8.11 -51.93 -0.42 0.68 16 32 H 0.03 0.57 7.14 -51.93 -0.37 0.20 16 33 H 0.06 1.33 8.14 -51.93 -0.42 0.91 16 34 H 0.01 0.18 8.14 -51.93 -0.42 -0.25 16 35 H 0.03 0.67 5.09 -51.93 -0.26 0.40 16 LS Contribution 261.91 15.07 3.95 3.95 Total: -1.00 -28.96 261.91 -8.59 -37.55 By element: Atomic # 1 Polarization: 0.99 SS G_CDS: -5.78 Total: -4.79 kcal Atomic # 6 Polarization: -18.84 SS G_CDS: -1.71 Total: -20.55 kcal Atomic # 7 Polarization: -36.52 SS G_CDS: -0.38 Total: -36.90 kcal Atomic # 14 Polarization: 25.41 SS G_CDS: -4.66 Total: 20.75 kcal Total LS contribution 3.95 Total: 3.95 kcal Total: -28.96 -8.59 -37.55 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000885364624.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.466 kcal (2) G-P(sol) polarization free energy of solvation -28.960 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.494 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.589 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.548 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.082 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds