Wall clock time and date at job start Mon Mar 30 2020 02:53:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86802 * 120.00041 * 2 1 4 4 H 1.48500 * 109.47007 * 89.99989 * 3 2 1 5 5 H 1.48504 * 109.47223 * 330.00185 * 3 2 1 6 6 H 1.48499 * 109.47224 * 210.00176 * 3 2 1 7 7 C 1.37878 * 120.00232 * 180.02562 * 2 1 3 8 8 C 1.51268 * 120.84582 * 7.30908 * 7 2 1 9 9 C 1.53668 * 108.31100 * 231.38325 * 8 7 2 10 10 C 1.52956 * 109.32415 * 305.14242 * 9 8 7 11 11 H 1.08999 * 109.35834 * 303.66033 * 10 9 8 12 12 N 1.46896 * 109.41411 * 183.83103 * 10 9 8 13 13 C 1.48539 * 110.99739 * 58.65028 * 12 10 9 14 14 C 1.54935 * 103.22679 * 159.72116 * 13 12 10 15 15 C 1.54601 * 102.92239 * 322.58546 * 14 13 12 16 16 C 1.47903 * 111.00280 * 176.04581 * 12 10 9 17 17 C 1.52966 * 109.81828 * 63.72633 * 10 9 8 18 18 C 1.51265 * 120.84997 * 187.03482 * 7 2 1 19 19 H 0.96997 * 119.99817 * 175.09455 * 1 2 3 20 20 H 1.09001 * 109.62914 * 351.04646 * 8 7 2 21 21 H 1.09001 * 109.62560 * 111.61103 * 8 7 2 22 22 H 1.09000 * 109.41717 * 185.24861 * 9 8 7 23 23 H 1.09002 * 109.63380 * 65.16631 * 9 8 7 24 24 H 1.09001 * 110.66783 * 278.15546 * 13 12 10 25 25 H 1.09002 * 110.66775 * 41.28836 * 13 12 10 26 26 H 1.08995 * 110.72696 * 204.22920 * 14 13 12 27 27 H 1.09001 * 110.72381 * 80.94064 * 14 13 12 28 28 H 1.08994 * 110.31220 * 263.04225 * 15 14 13 29 29 H 1.09001 * 110.30939 * 140.87334 * 15 14 13 30 30 H 1.08997 * 109.91430 * 333.51174 * 16 12 10 31 31 H 1.09002 * 109.91475 * 94.60549 * 16 12 10 32 32 H 1.08998 * 109.48253 * 176.42219 * 17 10 9 33 33 H 1.08998 * 109.47977 * 56.37568 * 17 10 9 34 34 H 1.09003 * 109.62040 * 248.38724 * 18 7 2 35 35 H 1.08998 * 109.62893 * 8.95318 * 18 7 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 1.4001 5 1 1.4466 2.6527 -0.7000 6 1 3.5467 1.4402 -0.7001 7 6 2.0046 -1.1940 -0.0005 8 6 1.2769 -2.5098 -0.1663 9 6 1.7109 -3.4481 0.9705 10 6 3.2358 -3.5679 0.9736 11 1 3.5732 -3.9115 -0.0042 12 7 3.6475 -4.5350 1.9998 13 6 3.0383 -5.8667 1.7511 14 6 3.9527 -6.8295 2.5494 15 6 5.3593 -6.2228 2.3410 16 6 5.1106 -4.7491 1.9699 17 6 3.8623 -2.2061 1.2780 18 6 3.5086 -1.2214 0.1585 19 1 -0.4850 -0.8370 -0.0718 20 1 0.2011 -2.3423 -0.1139 21 1 1.5348 -2.9520 -1.1286 22 1 1.2692 -4.4326 0.8163 23 1 1.3759 -3.0450 1.9262 24 1 2.0179 -5.9003 2.1328 25 1 3.0607 -6.1076 0.6883 26 1 3.9030 -7.8380 2.1388 27 1 3.6849 -6.8285 3.6060 28 1 5.8760 -6.7352 1.5296 29 1 5.9398 -6.2884 3.2613 30 1 5.4949 -4.5480 0.9699 31 1 5.5966 -4.0938 2.6929 32 1 4.9455 -2.3103 1.3417 33 1 3.4764 -1.8322 2.2263 34 1 3.9695 -1.5465 -0.7743 35 1 3.8674 -0.2258 0.4197 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000885364624.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:53:32 Heat of formation + Delta-G solvation = -36.093226 kcal Electronic energy + Delta-G solvation = -14459.441413 eV Core-core repulsion = 12262.300757 eV Total energy + Delta-G solvation = -2197.140656 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 209.148 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.40371 -37.76399 -34.53634 -32.01893 -31.49857 -29.62618 -27.97821 -24.20424 -23.42168 -22.06363 -21.34844 -20.74130 -18.56351 -17.28950 -16.73850 -15.81630 -15.68717 -15.01847 -14.68852 -14.43692 -14.15082 -13.88963 -13.53413 -13.01310 -12.94036 -12.66931 -12.40074 -12.17967 -12.00622 -11.95509 -11.86079 -11.79187 -11.42255 -11.24749 -11.01205 -10.53672 -10.21805 -9.33203 -8.60160 -6.16127 1.50388 1.57839 1.75217 2.54977 3.00913 3.20425 3.75800 3.78104 3.99847 4.16182 4.18123 4.35894 4.45977 4.59042 4.68036 4.71077 4.87665 4.89459 4.93520 4.98890 5.03589 5.05461 5.10249 5.12623 5.17913 5.21659 5.24849 5.35230 5.49960 5.73627 6.06071 6.07484 6.18928 6.24163 6.74718 7.53497 8.77635 Molecular weight = 209.15amu Principal moments of inertia in cm(-1) A = 0.057065 B = 0.008648 C = 0.007781 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 490.551346 B = 3237.012692 C = 3597.644112 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.944 5.944 2 C -0.021 4.021 3 Si 1.100 2.900 4 H -0.273 1.273 5 H -0.292 1.292 6 H -0.261 1.261 7 C -0.576 4.576 8 C -0.005 4.005 9 C -0.085 4.085 10 C 0.104 3.896 11 H 0.020 0.980 12 N -0.530 5.530 13 C 0.029 3.971 14 C -0.115 4.115 15 C -0.124 4.124 16 C 0.031 3.969 17 C -0.091 4.091 18 C -0.011 4.011 19 H 0.258 0.742 20 H 0.014 0.986 21 H -0.001 1.001 22 H 0.045 0.955 23 H 0.036 0.964 24 H 0.073 0.927 25 H 0.036 0.964 26 H 0.088 0.912 27 H 0.075 0.925 28 H 0.076 0.924 29 H 0.085 0.915 30 H 0.035 0.965 31 H 0.076 0.924 32 H 0.056 0.944 33 H 0.043 0.957 34 H 0.010 0.990 35 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.611 -10.894 3.999 15.725 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.583 5.583 2 C -0.219 4.219 3 Si 0.923 3.077 4 H -0.199 1.199 5 H -0.218 1.218 6 H -0.185 1.185 7 C -0.595 4.595 8 C -0.043 4.043 9 C -0.123 4.123 10 C -0.005 4.005 11 H 0.038 0.962 12 N -0.254 5.254 13 C -0.099 4.099 14 C -0.153 4.153 15 C -0.162 4.162 16 C -0.097 4.097 17 C -0.129 4.129 18 C -0.049 4.049 19 H 0.070 0.930 20 H 0.033 0.967 21 H 0.018 0.982 22 H 0.064 0.936 23 H 0.055 0.945 24 H 0.091 0.909 25 H 0.054 0.946 26 H 0.107 0.893 27 H 0.094 0.906 28 H 0.095 0.905 29 H 0.104 0.896 30 H 0.054 0.946 31 H 0.095 0.905 32 H 0.075 0.925 33 H 0.062 0.938 34 H 0.029 0.971 35 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges 10.251 -9.059 4.564 14.422 hybrid contribution -0.261 -1.753 -1.109 2.091 sum 9.990 -10.813 3.454 15.121 Atomic orbital electron populations 1.70907 1.08063 1.30314 1.49048 1.27077 0.96294 1.05467 0.93028 0.83174 0.74678 0.71857 0.77999 1.19852 1.21813 1.18536 1.21597 0.93423 0.92894 1.51609 1.19546 0.96091 0.95039 0.93605 1.21508 0.94749 0.97411 0.98677 1.21443 0.95179 0.92723 0.91126 0.96178 1.64796 1.06814 1.07707 1.46124 1.23268 0.99479 0.88816 0.98306 1.22470 0.93869 0.98258 1.00698 1.22396 0.97612 0.93455 1.02691 1.22912 0.88506 0.98135 1.00105 1.21484 0.97946 0.94446 0.98997 1.19661 0.95038 0.95762 0.94483 0.93022 0.96726 0.98238 0.93621 0.94507 0.90898 0.94603 0.89300 0.90580 0.90535 0.89608 0.94640 0.90548 0.92522 0.93779 0.97115 0.94619 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -58.53 13.66 21.45 0.29 -58.23 16 2 C -0.02 -1.20 5.45 84.65 0.46 -0.74 16 3 Si 1.10 50.75 27.44 68.60 1.88 52.63 16 4 H -0.27 -11.96 7.11 99.48 0.71 -11.25 16 5 H -0.29 -13.52 7.11 99.48 0.71 -12.81 16 6 H -0.26 -10.91 6.79 99.48 0.68 -10.23 16 7 C -0.58 -31.49 5.49 -16.17 -0.09 -31.58 16 8 C 0.00 -0.24 6.00 30.25 0.18 -0.06 16 9 C -0.09 -3.82 5.14 30.80 0.16 -3.66 16 10 C 0.10 4.14 1.54 44.89 0.07 4.21 16 11 H 0.02 0.84 7.98 -2.39 -0.02 0.82 16 12 N -0.53 -17.74 5.11 -858.00 -4.38 -22.12 16 13 C 0.03 0.82 5.35 86.65 0.46 1.29 16 14 C -0.11 -2.40 7.06 31.80 0.22 -2.18 16 15 C -0.12 -2.50 6.93 31.47 0.22 -2.28 16 16 C 0.03 0.85 5.44 86.45 0.47 1.32 16 17 C -0.09 -3.78 5.24 30.66 0.16 -3.62 16 18 C -0.01 -0.53 5.54 30.10 0.17 -0.36 16 19 H 0.26 16.13 6.36 -92.71 -0.59 15.54 16 20 H 0.01 0.80 5.79 -2.39 -0.01 0.79 16 21 H 0.00 -0.04 8.14 -2.39 -0.02 -0.06 16 22 H 0.05 1.84 6.71 -2.39 -0.02 1.83 16 23 H 0.04 1.77 8.14 -2.39 -0.02 1.75 16 24 H 0.07 2.13 7.57 -2.39 -0.02 2.12 16 25 H 0.04 1.04 8.01 -2.39 -0.02 1.02 16 26 H 0.09 1.48 8.14 -2.39 -0.02 1.46 16 27 H 0.08 1.54 8.14 -2.39 -0.02 1.52 16 28 H 0.08 1.35 8.14 -2.39 -0.02 1.33 16 29 H 0.09 1.46 8.14 -2.39 -0.02 1.44 16 30 H 0.04 1.00 7.64 -2.39 -0.02 0.99 16 31 H 0.08 2.04 8.11 -2.39 -0.02 2.02 16 32 H 0.06 2.05 7.14 -2.39 -0.02 2.03 16 33 H 0.04 1.95 8.14 -2.39 -0.02 1.93 16 34 H 0.01 0.49 8.14 -2.39 -0.02 0.47 16 35 H 0.04 1.61 5.09 -2.39 -0.01 1.60 16 Total: -1.00 -62.53 261.91 1.47 -61.06 By element: Atomic # 1 Polarization: 3.12 SS G_CDS: 1.19 Total: 4.31 kcal Atomic # 6 Polarization: -40.14 SS G_CDS: 2.49 Total: -37.65 kcal Atomic # 7 Polarization: -76.26 SS G_CDS: -4.09 Total: -80.35 kcal Atomic # 14 Polarization: 50.75 SS G_CDS: 1.88 Total: 52.63 kcal Total: -62.53 1.47 -61.06 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000885364624.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.967 kcal (2) G-P(sol) polarization free energy of solvation -62.530 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.563 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.470 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.060 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.093 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds