Wall clock time and date at job start Mon Mar 30 2020 02:41:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53001 * 109.47050 * 2 1 4 4 N 1.46896 * 109.47382 * 120.00257 * 2 1 3 5 5 C 1.47905 * 110.99618 * 304.18980 * 4 2 1 6 6 C 1.53993 * 107.05930 * 214.15441 * 5 4 2 7 7 C 1.54602 * 105.13788 * 1.22652 * 6 5 4 8 8 C 1.48531 * 111.00023 * 186.79779 * 4 2 1 9 9 H 1.08990 * 110.67132 * 41.28062 * 8 4 2 10 10 C 1.50702 * 110.66342 * 278.14957 * 8 4 2 11 11 C 1.35031 * 119.99854 * 121.26331 * 10 8 4 12 12 C 1.40074 * 120.00004 * 4.45164 * 11 10 8 13 13 H 1.07997 * 119.99574 * 7.92491 * 12 11 10 14 14 C 1.40310 * 119.99905 * 187.92169 * 12 11 10 15 15 N 1.30687 * 120.00295 * 359.97438 * 14 12 11 16 16 Si 1.86795 * 119.99751 * 180.02562 * 14 12 11 17 17 H 1.48502 * 109.47461 * 59.99950 * 16 14 12 18 18 H 1.48500 * 109.47108 * 179.97438 * 16 14 12 19 19 H 1.48502 * 109.47301 * 299.99990 * 16 14 12 20 20 H 1.09004 * 109.47040 * 56.19333 * 1 2 3 21 21 H 1.08996 * 109.47292 * 296.19053 * 1 2 3 22 22 H 1.09002 * 109.46880 * 176.19087 * 1 2 3 23 23 H 1.09008 * 109.47209 * 240.00655 * 2 1 3 24 24 H 1.08992 * 109.47532 * 186.38165 * 3 2 1 25 25 H 1.09000 * 109.47216 * 306.38654 * 3 2 1 26 26 H 1.09004 * 109.47185 * 66.38060 * 3 2 1 27 27 H 1.09003 * 109.91987 * 333.50635 * 5 4 2 28 28 H 1.09003 * 109.91662 * 94.60495 * 5 4 2 29 29 H 1.08996 * 110.31275 * 120.14003 * 6 5 4 30 30 H 1.08999 * 110.31189 * 242.31515 * 6 5 4 31 31 H 1.09004 * 110.72366 * 140.31692 * 7 6 5 32 32 H 1.09002 * 110.72088 * 263.42188 * 7 6 5 33 33 H 1.08005 * 120.00301 * 301.26536 * 10 8 4 34 34 H 1.07997 * 120.00262 * 184.46145 * 11 10 8 35 35 H 0.97001 * 119.99992 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0198 -0.6925 1.1994 5 6 1.4649 -0.0826 2.4272 6 6 2.5504 -0.1881 3.5144 7 6 3.7549 -0.8623 2.8181 8 6 3.4954 -0.5718 1.3185 9 1 3.8211 0.4356 1.0598 10 6 4.1843 -1.5941 0.4517 11 6 5.0409 -1.1945 -0.5126 12 6 5.3608 0.1626 -0.6467 13 1 5.0266 0.8720 0.0958 14 6 6.1156 0.6001 -1.7456 15 7 6.5205 -0.2586 -2.6437 16 14 6.5429 2.4097 -1.9240 17 1 7.3343 2.8500 -0.7471 18 1 7.3414 2.6103 -3.1599 19 1 5.2932 3.2077 -2.0066 20 1 -0.3633 0.5718 -0.8539 21 1 -0.3634 0.4535 0.9221 22 1 -0.3633 -1.0254 -0.0683 23 1 1.8934 -0.5138 -0.8901 24 1 3.1239 1.4447 -0.1142 25 1 1.5864 1.9883 -0.8273 26 1 1.7729 1.9223 0.9416 27 1 1.2225 0.9644 2.2449 28 1 0.5701 -0.6220 2.7381 29 1 2.8265 0.8042 3.8709 30 1 2.1985 -0.8040 4.3419 31 1 4.6914 -0.4086 3.1425 32 1 3.7606 -1.9352 3.0106 33 1 3.9929 -2.6465 0.6018 34 1 5.4791 -1.9212 -1.1806 35 1 7.0420 0.0440 -3.4036 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260589195.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:41:38 Heat of formation + Delta-G solvation = 4.596186 kcal Electronic energy + Delta-G solvation = -14465.206052 eV Core-core repulsion = 12269.829822 eV Total energy + Delta-G solvation = -2195.376231 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 209.148 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -38.84768 -34.28789 -33.62852 -31.45525 -28.34060 -27.60467 -26.63973 -24.63347 -21.97662 -20.26102 -18.99562 -18.32794 -16.25452 -15.85578 -14.94111 -14.30869 -13.67869 -13.62635 -13.10294 -12.72123 -12.50065 -12.20684 -11.80973 -11.30366 -11.24338 -11.10557 -10.92071 -10.76937 -10.67614 -10.56729 -10.22238 -10.09285 -9.82928 -9.45796 -9.41784 -8.95673 -7.57015 -7.33453 -6.69829 -4.20835 2.98267 3.08581 3.12015 3.89912 3.99751 4.87960 5.32940 5.41065 5.48837 5.60143 5.70563 5.76547 5.98100 6.00501 6.11280 6.18163 6.25345 6.26462 6.38772 6.51982 6.55701 6.60364 6.68326 6.89614 6.98379 7.09017 7.19854 7.27938 7.62033 7.83756 8.00153 8.06390 8.50560 8.72360 9.17539 9.32773 10.33890 Molecular weight = 209.15amu Principal moments of inertia in cm(-1) A = 0.031634 B = 0.010318 C = 0.009516 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 884.900154 B = 2713.092036 C = 2941.607972 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.077 3.923 3 C -0.192 4.192 4 N -0.508 5.508 5 C 0.030 3.970 6 C -0.133 4.133 7 C -0.117 4.117 8 C 0.136 3.864 9 H 0.064 0.936 10 C -0.392 4.392 11 C 0.053 3.947 12 C -0.463 4.463 13 H 0.073 0.927 14 C 0.075 3.925 15 N -0.822 5.822 16 Si 0.901 3.099 17 H -0.265 1.265 18 H -0.279 1.279 19 H -0.265 1.265 20 H 0.050 0.950 21 H 0.048 0.952 22 H 0.056 0.944 23 H 0.087 0.913 24 H 0.080 0.920 25 H 0.048 0.952 26 H 0.045 0.955 27 H 0.039 0.961 28 H 0.061 0.939 29 H 0.055 0.945 30 H 0.058 0.942 31 H 0.058 0.942 32 H 0.063 0.937 33 H 0.067 0.933 34 H 0.077 0.923 35 H 0.279 0.721 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.481 3.575 5.135 9.009 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.032 4.032 3 C -0.250 4.250 4 N -0.232 5.232 5 C -0.099 4.099 6 C -0.171 4.171 7 C -0.155 4.155 8 C 0.030 3.970 9 H 0.082 0.918 10 C -0.414 4.414 11 C 0.032 3.968 12 C -0.493 4.493 13 H 0.091 0.909 14 C -0.141 4.141 15 N -0.450 5.450 16 Si 0.727 3.273 17 H -0.190 1.190 18 H -0.205 1.205 19 H -0.190 1.190 20 H 0.069 0.931 21 H 0.067 0.933 22 H 0.075 0.925 23 H 0.105 0.895 24 H 0.099 0.901 25 H 0.067 0.933 26 H 0.064 0.936 27 H 0.057 0.943 28 H 0.080 0.920 29 H 0.074 0.926 30 H 0.077 0.923 31 H 0.077 0.923 32 H 0.081 0.919 33 H 0.085 0.915 34 H 0.096 0.904 35 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -6.514 3.011 4.853 8.663 hybrid contribution 0.443 1.707 -0.166 1.771 sum -6.072 4.717 4.687 9.005 Atomic orbital electron populations 1.21894 0.96006 1.01465 1.00678 1.21592 0.93623 0.92449 0.95521 1.22592 1.04004 0.98071 1.00382 1.65139 1.08339 1.50016 0.99715 1.22822 0.97560 0.97452 0.92022 1.22407 0.96928 0.99987 0.97801 1.22525 0.95974 1.00139 0.96906 1.21373 0.84599 0.98697 0.92307 0.91829 1.21659 1.14359 0.94727 1.10687 1.19889 0.90530 0.94957 0.91426 1.19583 1.28510 0.95175 1.06077 0.90911 1.26065 0.93595 0.99355 0.95129 1.69560 1.29210 1.36299 1.09889 0.86475 0.79387 0.83121 0.78356 1.19002 1.20451 1.18964 0.93114 0.93341 0.92534 0.89489 0.90116 0.93255 0.93594 0.94308 0.92031 0.92647 0.92319 0.92311 0.91857 0.91469 0.90447 0.91007 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.22 9.08 37.16 0.34 -1.88 16 2 C 0.08 1.47 3.02 -67.71 -0.20 1.27 16 3 C -0.19 -3.56 8.34 37.16 0.31 -3.25 16 4 N -0.51 -10.16 5.04 -216.07 -1.09 -11.25 16 5 C 0.03 0.51 5.05 -2.75 -0.01 0.49 16 6 C -0.13 -2.17 6.93 -25.37 -0.18 -2.34 16 7 C -0.12 -2.25 6.48 -24.87 -0.16 -2.42 16 8 C 0.14 2.98 2.22 -66.94 -0.15 2.83 16 9 H 0.06 1.49 3.19 -51.93 -0.17 1.32 16 10 C -0.39 -9.81 9.16 -35.45 -0.32 -10.14 16 11 C 0.05 1.43 9.37 -40.03 -0.38 1.05 16 12 C -0.46 -12.27 8.04 -38.11 -0.31 -12.58 16 13 H 0.07 1.89 4.82 -52.49 -0.25 1.63 16 14 C 0.07 1.92 5.50 -17.26 -0.09 1.82 16 15 N -0.82 -21.92 12.88 55.57 0.72 -21.21 16 16 Si 0.90 19.25 29.56 -169.99 -5.03 14.23 16 17 H -0.27 -5.60 7.11 56.52 0.40 -5.19 16 18 H -0.28 -5.82 7.11 56.52 0.40 -5.42 16 19 H -0.26 -5.58 7.11 56.52 0.40 -5.18 16 20 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 21 H 0.05 0.70 6.67 -51.93 -0.35 0.35 16 22 H 0.06 0.87 8.14 -51.93 -0.42 0.44 16 23 H 0.09 1.89 8.09 -51.92 -0.42 1.47 16 24 H 0.08 1.72 4.92 -51.93 -0.26 1.46 16 25 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 26 H 0.05 0.78 6.03 -51.93 -0.31 0.47 16 27 H 0.04 0.63 5.30 -51.93 -0.28 0.36 16 28 H 0.06 0.98 8.12 -51.93 -0.42 0.55 16 29 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 30 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 31 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 32 H 0.06 1.23 8.05 -51.93 -0.42 0.81 16 33 H 0.07 1.71 8.06 -52.48 -0.42 1.29 16 34 H 0.08 2.20 7.45 -52.49 -0.39 1.81 16 35 H 0.28 6.84 8.29 -40.82 -0.34 6.50 16 LS Contribution 269.85 15.07 4.07 4.07 Total: -1.00 -26.56 269.85 -7.84 -34.41 By element: Atomic # 1 Polarization: 10.25 SS G_CDS: -5.35 Total: 4.89 kcal Atomic # 6 Polarization: -23.98 SS G_CDS: -1.16 Total: -25.14 kcal Atomic # 7 Polarization: -32.08 SS G_CDS: -0.37 Total: -32.45 kcal Atomic # 14 Polarization: 19.25 SS G_CDS: -5.03 Total: 14.23 kcal Total LS contribution 4.07 Total: 4.07 kcal Total: -26.56 -7.84 -34.41 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260589195.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.003 kcal (2) G-P(sol) polarization free energy of solvation -26.565 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.438 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.842 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.407 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.596 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds