Wall clock time and date at job start Mon Mar 30 2020 02:20:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52997 * 109.47318 * 2 1 4 4 C 1.52999 * 109.47158 * 120.00679 * 2 1 3 5 5 H 1.09009 * 109.47209 * 180.16079 * 4 2 1 6 6 C 1.50693 * 109.47618 * 60.15826 * 4 2 1 7 7 H 1.08004 * 120.00247 * 237.31537 * 6 4 2 8 8 C 1.37883 * 120.00116 * 57.31243 * 6 4 2 9 9 N 1.31514 * 119.99851 * 202.86378 * 8 6 4 10 10 Si 1.86793 * 119.99918 * 22.86408 * 8 6 4 11 11 H 1.48493 * 109.47397 * 94.04161 * 10 8 6 12 12 H 1.48498 * 109.47424 * 214.04524 * 10 8 6 13 13 H 1.48505 * 109.47354 * 334.04344 * 10 8 6 14 14 N 1.46900 * 109.47163 * 300.15463 * 4 2 1 15 15 C 1.48556 * 111.00138 * 193.58436 * 14 4 2 16 16 C 1.54390 * 104.69634 * 200.90191 * 15 14 4 17 17 H 1.08999 * 117.60174 * 244.77679 * 16 15 14 18 18 C 1.57158 * 118.11940 * 86.11125 * 16 15 14 19 19 C 1.52998 * 59.76409 * 269.01064 * 18 16 15 20 20 H 1.08996 * 119.52398 * 247.63459 * 19 18 16 21 21 C 1.48557 * 110.99908 * 78.15786 * 14 4 2 22 22 H 1.08998 * 109.46435 * 318.53479 * 1 2 3 23 23 H 1.08993 * 109.47027 * 78.53400 * 1 2 3 24 24 H 1.08999 * 109.46813 * 198.53866 * 1 2 3 25 25 H 1.09008 * 109.47064 * 240.00280 * 2 1 3 26 26 H 1.09001 * 109.47152 * 184.80223 * 3 2 1 27 27 H 1.09000 * 109.46947 * 304.80202 * 3 2 1 28 28 H 1.09002 * 109.46676 * 64.80021 * 3 2 1 29 29 H 0.96997 * 119.99876 * 179.97438 * 9 8 6 30 30 H 1.08999 * 110.41263 * 319.73477 * 15 14 4 31 31 H 1.08995 * 110.41536 * 82.06676 * 15 14 4 32 32 H 1.08995 * 116.91395 * 161.40911 * 18 16 15 33 33 H 1.08998 * 118.44644 * 15.92634 * 18 16 15 34 34 H 1.08993 * 110.41466 * 277.82471 * 21 14 4 35 35 H 1.09002 * 110.40829 * 40.26793 * 21 14 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7214 1.2491 5 1 3.1301 -0.7189 1.2506 6 6 1.5410 -2.1433 1.2471 7 1 0.9561 -2.5115 2.0770 8 6 1.8310 -2.9742 0.1857 9 7 1.0698 -4.0184 -0.0590 10 14 3.3051 -2.6169 -0.9045 11 1 4.4794 -3.3833 -0.4162 12 1 2.9973 -3.0189 -2.3006 13 1 3.6104 -1.1641 -0.8637 14 7 1.5473 -0.0312 2.4487 15 6 2.2708 -0.4905 3.6621 16 6 1.3364 -0.1272 4.8362 17 1 1.6894 0.6158 5.5513 18 6 0.2149 -1.1534 5.2352 19 6 -0.0759 -0.0533 4.2124 20 1 -0.7738 0.7447 4.4656 21 6 0.1278 -0.3776 2.7169 22 1 -0.3632 0.7701 0.6805 23 1 -0.3633 0.2043 -1.0071 24 1 -0.3633 -0.9743 0.3267 25 1 1.8934 -0.5138 -0.8901 26 1 3.1267 1.4436 -0.0860 27 1 1.6082 1.9805 -0.8439 28 1 1.7486 1.9308 0.9299 29 1 1.2736 -4.6027 -0.8059 30 1 2.4317 -1.5679 3.6238 31 1 3.2225 0.0321 3.7580 32 1 -0.2226 -1.0450 6.2276 33 1 0.2912 -2.1758 4.8653 34 1 -0.5348 0.2314 2.1021 35 1 -0.0466 -1.4373 2.5306 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261157578.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:20:02 Heat of formation + Delta-G solvation = 50.161783 kcal Electronic energy + Delta-G solvation = -14917.934782 eV Core-core repulsion = 12724.534424 eV Total energy + Delta-G solvation = -2193.400358 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 209.148 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.26260 -35.95232 -32.19547 -31.74410 -27.93386 -27.28775 -25.98860 -23.79277 -21.65315 -19.86840 -19.41737 -18.89148 -16.70688 -15.55346 -14.83592 -14.11131 -13.80920 -13.11330 -12.83250 -12.70783 -12.45931 -12.11760 -11.81113 -11.51197 -11.23365 -10.98063 -10.73634 -10.62653 -10.39452 -10.20189 -9.85857 -9.58659 -9.54390 -9.41700 -9.23269 -8.91860 -8.38320 -7.12640 -6.19129 -4.08193 3.26430 3.36987 3.41512 4.07743 4.39986 4.94173 5.11271 5.24775 5.28786 5.64914 5.78426 5.86379 6.03924 6.06101 6.13342 6.19184 6.34405 6.49872 6.51742 6.55828 6.62297 6.71598 6.77666 6.84418 6.91539 7.00911 7.09331 7.22308 7.39797 7.49630 7.60072 8.00780 8.16490 8.42419 8.90519 9.51693 10.92377 Molecular weight = 209.15amu Principal moments of inertia in cm(-1) A = 0.031417 B = 0.013375 C = 0.011650 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 891.033297 B = 2092.921907 C = 2402.908825 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.083 4.083 3 C -0.139 4.139 4 C 0.179 3.821 5 H 0.029 0.971 6 C -0.556 4.556 7 H 0.081 0.919 8 C 0.089 3.911 9 N -0.880 5.880 10 Si 0.854 3.146 11 H -0.283 1.283 12 H -0.288 1.288 13 H -0.251 1.251 14 N -0.499 5.499 15 C 0.064 3.936 16 C -0.170 4.170 17 H 0.106 0.894 18 C -0.159 4.159 19 C -0.162 4.162 20 H 0.100 0.900 21 C 0.043 3.957 22 H 0.048 0.952 23 H 0.024 0.976 24 H 0.078 0.922 25 H 0.055 0.945 26 H 0.036 0.964 27 H 0.031 0.969 28 H 0.063 0.937 29 H 0.263 0.737 30 H 0.054 0.946 31 H 0.066 0.934 32 H 0.089 0.911 33 H 0.093 0.907 34 H 0.083 0.917 35 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.176 7.338 4.862 8.804 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.102 4.102 3 C -0.196 4.196 4 C 0.070 3.930 5 H 0.046 0.954 6 C -0.593 4.593 7 H 0.099 0.901 8 C -0.116 4.116 9 N -0.515 5.515 10 Si 0.681 3.319 11 H -0.209 1.209 12 H -0.214 1.214 13 H -0.175 1.175 14 N -0.222 5.222 15 C -0.064 4.064 16 C -0.189 4.189 17 H 0.124 0.876 18 C -0.197 4.197 19 C -0.181 4.181 20 H 0.118 0.882 21 C -0.084 4.084 22 H 0.067 0.933 23 H 0.043 0.957 24 H 0.097 0.903 25 H 0.074 0.926 26 H 0.055 0.945 27 H 0.051 0.949 28 H 0.082 0.918 29 H 0.073 0.927 30 H 0.072 0.928 31 H 0.085 0.915 32 H 0.108 0.892 33 H 0.111 0.889 34 H 0.101 0.899 35 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -0.125 7.766 4.600 9.027 hybrid contribution 0.747 -0.858 -0.578 1.276 sum 0.622 6.908 4.021 8.018 Atomic orbital electron populations 1.22073 0.96132 1.02716 0.98655 1.21330 0.95902 0.94279 0.98734 1.21801 0.99343 0.97736 1.00720 1.19686 0.94802 0.91769 0.86710 0.95362 1.21442 1.35859 0.95234 1.06760 0.90117 1.24854 0.95513 0.94958 0.96282 1.70073 1.35429 1.16916 1.29109 0.87330 0.84728 0.79837 0.80038 1.20920 1.21404 1.17549 1.65739 1.01742 1.52625 1.02120 1.22462 0.95906 0.99428 0.88633 1.24081 0.91223 1.02813 1.00781 0.87638 1.23658 1.01704 0.95717 0.98587 1.23620 0.98775 1.00871 0.94811 0.88219 1.23231 0.91812 1.02638 0.90752 0.93311 0.95702 0.90349 0.92640 0.94495 0.94942 0.91776 0.92714 0.92766 0.91537 0.89234 0.88858 0.89918 0.90071 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.87 7.61 37.16 0.28 -2.59 16 2 C -0.08 -1.81 2.13 -90.62 -0.19 -2.00 16 3 C -0.14 -2.62 9.02 37.16 0.34 -2.29 16 4 C 0.18 4.11 1.26 -68.87 -0.09 4.02 16 5 H 0.03 0.69 6.92 -51.92 -0.36 0.33 16 6 C -0.56 -14.55 5.85 -34.44 -0.20 -14.76 16 7 H 0.08 2.29 5.84 -52.48 -0.31 1.99 16 8 C 0.09 2.43 5.23 -17.82 -0.09 2.34 16 9 N -0.88 -25.65 13.96 55.43 0.77 -24.87 16 10 Si 0.85 20.79 25.81 -169.99 -4.39 16.40 16 11 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 12 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 13 H -0.25 -5.86 5.59 56.52 0.32 -5.54 16 14 N -0.50 -10.26 4.44 -223.41 -0.99 -11.25 16 15 C 0.06 1.22 6.13 -2.18 -0.01 1.21 16 16 C -0.17 -2.80 7.32 -86.81 -0.64 -3.43 16 17 H 0.11 1.54 8.14 -51.93 -0.42 1.11 16 18 C -0.16 -2.50 10.29 -24.47 -0.25 -2.76 16 19 C -0.16 -2.72 6.99 -89.07 -0.62 -3.34 16 20 H 0.10 1.51 8.14 -51.93 -0.42 1.08 16 21 C 0.04 0.84 4.37 -2.18 -0.01 0.83 16 22 H 0.05 0.92 5.75 -51.93 -0.30 0.63 16 23 H 0.02 0.47 8.14 -51.93 -0.42 0.04 16 24 H 0.08 1.82 6.00 -51.93 -0.31 1.51 16 25 H 0.06 1.29 4.65 -51.92 -0.24 1.05 16 26 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 27 H 0.03 0.55 8.14 -51.93 -0.42 0.13 16 28 H 0.06 1.20 7.46 -51.93 -0.39 0.81 16 29 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 30 H 0.05 1.15 7.27 -51.93 -0.38 0.78 16 31 H 0.07 1.19 8.14 -51.93 -0.42 0.77 16 32 H 0.09 1.18 8.14 -51.93 -0.42 0.76 16 33 H 0.09 1.61 8.14 -51.93 -0.42 1.19 16 34 H 0.08 1.59 4.95 -51.93 -0.26 1.33 16 35 H 0.08 1.86 4.90 -51.93 -0.25 1.61 16 LS Contribution 257.40 15.07 3.88 3.88 Total: -1.00 -27.39 257.40 -7.61 -35.01 By element: Atomic # 1 Polarization: 9.00 SS G_CDS: -5.40 Total: 3.60 kcal Atomic # 6 Polarization: -21.28 SS G_CDS: -1.49 Total: -22.77 kcal Atomic # 7 Polarization: -35.90 SS G_CDS: -0.22 Total: -36.12 kcal Atomic # 14 Polarization: 20.79 SS G_CDS: -4.39 Total: 16.40 kcal Total LS contribution 3.88 Total: 3.88 kcal Total: -27.39 -7.61 -35.01 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261157578.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.168 kcal (2) G-P(sol) polarization free energy of solvation -27.394 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.775 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.613 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.006 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.162 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds