Wall clock time and date at job start Mon Mar 30 2020 02:20:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52997 * 109.47318 * 2 1 4 4 C 1.52999 * 109.47158 * 120.00679 * 2 1 3 5 5 H 1.09009 * 109.47209 * 180.16079 * 4 2 1 6 6 C 1.50693 * 109.47618 * 60.15826 * 4 2 1 7 7 H 1.08004 * 120.00247 * 237.31537 * 6 4 2 8 8 C 1.37883 * 120.00116 * 57.31243 * 6 4 2 9 9 N 1.31514 * 119.99851 * 202.86378 * 8 6 4 10 10 Si 1.86793 * 119.99918 * 22.86408 * 8 6 4 11 11 H 1.48493 * 109.47397 * 94.04161 * 10 8 6 12 12 H 1.48498 * 109.47424 * 214.04524 * 10 8 6 13 13 H 1.48505 * 109.47354 * 334.04344 * 10 8 6 14 14 N 1.46900 * 109.47163 * 300.15463 * 4 2 1 15 15 C 1.48556 * 111.00138 * 193.58436 * 14 4 2 16 16 C 1.54390 * 104.69634 * 200.90191 * 15 14 4 17 17 H 1.08999 * 117.60174 * 244.77679 * 16 15 14 18 18 C 1.57158 * 118.11940 * 86.11125 * 16 15 14 19 19 C 1.52998 * 59.76409 * 269.01064 * 18 16 15 20 20 H 1.08996 * 119.52398 * 247.63459 * 19 18 16 21 21 C 1.48557 * 110.99908 * 78.15786 * 14 4 2 22 22 H 1.08998 * 109.46435 * 318.53479 * 1 2 3 23 23 H 1.08993 * 109.47027 * 78.53400 * 1 2 3 24 24 H 1.08999 * 109.46813 * 198.53866 * 1 2 3 25 25 H 1.09008 * 109.47064 * 240.00280 * 2 1 3 26 26 H 1.09001 * 109.47152 * 184.80223 * 3 2 1 27 27 H 1.09000 * 109.46947 * 304.80202 * 3 2 1 28 28 H 1.09002 * 109.46676 * 64.80021 * 3 2 1 29 29 H 0.96997 * 119.99876 * 179.97438 * 9 8 6 30 30 H 1.08999 * 110.41263 * 319.73477 * 15 14 4 31 31 H 1.08995 * 110.41536 * 82.06676 * 15 14 4 32 32 H 1.08995 * 116.91395 * 161.40911 * 18 16 15 33 33 H 1.08998 * 118.44644 * 15.92634 * 18 16 15 34 34 H 1.08993 * 110.41466 * 277.82471 * 21 14 4 35 35 H 1.09002 * 110.40829 * 40.26793 * 21 14 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7214 1.2491 5 1 3.1301 -0.7189 1.2506 6 6 1.5410 -2.1433 1.2471 7 1 0.9561 -2.5115 2.0770 8 6 1.8310 -2.9742 0.1857 9 7 1.0698 -4.0184 -0.0590 10 14 3.3051 -2.6169 -0.9045 11 1 4.4794 -3.3833 -0.4162 12 1 2.9973 -3.0189 -2.3006 13 1 3.6104 -1.1641 -0.8637 14 7 1.5473 -0.0312 2.4487 15 6 2.2708 -0.4905 3.6621 16 6 1.3364 -0.1272 4.8362 17 1 1.6894 0.6158 5.5513 18 6 0.2149 -1.1534 5.2352 19 6 -0.0759 -0.0533 4.2124 20 1 -0.7738 0.7447 4.4656 21 6 0.1278 -0.3776 2.7169 22 1 -0.3632 0.7701 0.6805 23 1 -0.3633 0.2043 -1.0071 24 1 -0.3633 -0.9743 0.3267 25 1 1.8934 -0.5138 -0.8901 26 1 3.1267 1.4436 -0.0860 27 1 1.6082 1.9805 -0.8439 28 1 1.7486 1.9308 0.9299 29 1 1.2736 -4.6027 -0.8059 30 1 2.4317 -1.5679 3.6238 31 1 3.2225 0.0321 3.7580 32 1 -0.2226 -1.0450 6.2276 33 1 0.2912 -2.1758 4.8653 34 1 -0.5348 0.2314 2.1021 35 1 -0.0466 -1.4373 2.5306 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261157578.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:20:02 Heat of formation + Delta-G solvation = 33.076582 kcal Electronic energy + Delta-G solvation = -14918.675652 eV Core-core repulsion = 12724.534424 eV Total energy + Delta-G solvation = -2194.141228 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 209.148 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.83041 -37.58020 -34.27199 -33.31808 -29.50657 -29.16284 -27.58518 -25.54991 -23.23985 -21.41039 -20.90030 -20.65613 -18.60391 -17.21997 -16.48983 -15.88524 -15.59661 -14.82576 -14.62458 -14.27354 -14.16456 -13.70594 -13.45905 -13.09185 -12.87747 -12.85235 -12.40693 -12.15825 -12.10817 -11.90122 -11.61728 -11.34784 -11.24430 -10.99247 -10.68814 -10.57824 -10.46318 -8.90030 -8.32755 -6.23230 1.29805 1.36615 1.44930 2.34771 2.74949 3.00740 3.41727 3.83844 3.89320 4.23307 4.34370 4.38269 4.46488 4.48920 4.54908 4.83062 4.88753 4.95186 4.98558 5.00356 5.02974 5.13189 5.23646 5.29271 5.35345 5.40711 5.43447 5.51264 5.62334 5.74321 5.79548 6.20444 6.31043 6.43080 6.80930 7.38531 8.82194 Molecular weight = 209.15amu Principal moments of inertia in cm(-1) A = 0.031417 B = 0.013375 C = 0.011650 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 891.033297 B = 2092.921907 C = 2402.908825 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.089 4.089 3 C -0.129 4.129 4 C 0.182 3.818 5 H 0.019 0.981 6 C -0.541 4.541 7 H 0.046 0.954 8 C 0.037 3.963 9 N -0.927 5.927 10 Si 0.909 3.091 11 H -0.284 1.284 12 H -0.288 1.288 13 H -0.231 1.231 14 N -0.491 5.491 15 C 0.056 3.944 16 C -0.162 4.162 17 H 0.138 0.862 18 C -0.153 4.153 19 C -0.164 4.164 20 H 0.129 0.871 21 C 0.044 3.956 22 H 0.067 0.933 23 H 0.038 0.962 24 H 0.042 0.958 25 H 0.039 0.961 26 H 0.040 0.960 27 H 0.053 0.947 28 H 0.068 0.932 29 H 0.263 0.737 30 H 0.021 0.979 31 H 0.082 0.918 32 H 0.126 0.874 33 H 0.065 0.935 34 H 0.088 0.912 35 H 0.039 0.961 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.287 9.995 5.599 11.460 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.108 4.108 3 C -0.186 4.186 4 C 0.073 3.927 5 H 0.037 0.963 6 C -0.579 4.579 7 H 0.064 0.936 8 C -0.163 4.163 9 N -0.566 5.566 10 Si 0.734 3.266 11 H -0.210 1.210 12 H -0.215 1.215 13 H -0.154 1.154 14 N -0.214 5.214 15 C -0.072 4.072 16 C -0.180 4.180 17 H 0.156 0.844 18 C -0.190 4.190 19 C -0.183 4.183 20 H 0.146 0.854 21 C -0.084 4.084 22 H 0.085 0.915 23 H 0.058 0.942 24 H 0.061 0.939 25 H 0.057 0.943 26 H 0.059 0.941 27 H 0.072 0.928 28 H 0.087 0.913 29 H 0.072 0.928 30 H 0.039 0.961 31 H 0.101 0.899 32 H 0.144 0.856 33 H 0.084 0.916 34 H 0.106 0.894 35 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges 0.347 10.444 5.348 11.738 hybrid contribution 0.547 -1.723 -0.738 1.953 sum 0.894 8.720 4.610 9.904 Atomic orbital electron populations 1.21942 0.95573 1.01257 0.99861 1.21322 0.96460 0.96097 0.96938 1.21696 0.99601 0.95402 1.01937 1.19591 0.94113 0.90109 0.88870 0.96282 1.21631 1.34142 0.97057 1.05106 0.93624 1.25552 0.97713 0.94996 0.98072 1.70185 1.37377 1.18598 1.30414 0.86445 0.81339 0.80701 0.78143 1.21019 1.21469 1.15435 1.65767 1.02237 1.51567 1.01851 1.22545 0.97458 0.97619 0.89568 1.24134 0.90062 1.03516 1.00307 0.84395 1.23710 1.01425 0.94065 0.99843 1.23625 0.99866 1.02199 0.92594 0.85352 1.23097 0.91490 1.00092 0.93676 0.91468 0.94245 0.93931 0.94281 0.94118 0.92754 0.91332 0.92807 0.96080 0.89948 0.85636 0.91611 0.89391 0.94266 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.24 7.61 71.98 0.55 -4.69 16 2 C -0.09 -3.75 2.13 -10.79 -0.02 -3.77 16 3 C -0.13 -4.47 9.02 71.98 0.65 -3.82 16 4 C 0.18 8.35 1.26 44.17 0.06 8.41 16 5 H 0.02 0.92 6.92 -2.38 -0.02 0.90 16 6 C -0.54 -29.43 5.85 25.60 0.15 -29.28 16 7 H 0.05 2.78 5.84 -2.91 -0.02 2.76 16 8 C 0.04 2.08 5.23 84.66 0.44 2.52 16 9 N -0.93 -56.40 13.96 21.45 0.30 -56.10 16 10 Si 0.91 43.43 25.81 68.60 1.77 45.20 16 11 H -0.28 -13.50 7.11 99.48 0.71 -12.79 16 12 H -0.29 -13.75 7.11 99.48 0.71 -13.04 16 13 H -0.23 -10.22 5.59 99.48 0.56 -9.67 16 14 N -0.49 -19.77 4.44 -860.73 -3.82 -23.59 16 15 C 0.06 2.10 6.13 86.45 0.53 2.63 16 16 C -0.16 -4.88 7.32 -8.33 -0.06 -4.94 16 17 H 0.14 3.36 8.14 -2.39 -0.02 3.34 16 18 C -0.15 -4.54 10.29 32.06 0.33 -4.21 16 19 C -0.16 -5.15 6.99 -9.79 -0.07 -5.21 16 20 H 0.13 3.35 8.14 -2.39 -0.02 3.33 16 21 C 0.04 1.72 4.37 86.45 0.38 2.10 16 22 H 0.07 2.43 5.75 -2.39 -0.01 2.42 16 23 H 0.04 1.45 8.14 -2.39 -0.02 1.43 16 24 H 0.04 2.01 6.00 -2.39 -0.01 2.00 16 25 H 0.04 1.77 4.65 -2.38 -0.01 1.76 16 26 H 0.04 1.36 8.14 -2.39 -0.02 1.35 16 27 H 0.05 1.64 8.14 -2.39 -0.02 1.62 16 28 H 0.07 2.31 7.46 -2.39 -0.02 2.29 16 29 H 0.26 15.15 8.31 -92.71 -0.77 14.38 16 30 H 0.02 0.92 7.27 -2.39 -0.02 0.90 16 31 H 0.08 2.79 8.14 -2.39 -0.02 2.78 16 32 H 0.13 2.85 8.14 -2.39 -0.02 2.83 16 33 H 0.07 2.32 8.14 -2.39 -0.02 2.30 16 34 H 0.09 3.31 4.95 -2.39 -0.01 3.30 16 35 H 0.04 1.89 4.90 -2.39 -0.01 1.88 16 Total: -1.00 -60.80 257.40 2.09 -58.70 By element: Atomic # 1 Polarization: 15.14 SS G_CDS: 0.91 Total: 16.06 kcal Atomic # 6 Polarization: -43.20 SS G_CDS: 2.93 Total: -40.27 kcal Atomic # 7 Polarization: -76.16 SS G_CDS: -3.52 Total: -79.69 kcal Atomic # 14 Polarization: 43.43 SS G_CDS: 1.77 Total: 45.20 kcal Total: -60.80 2.09 -58.70 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261157578.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.781 kcal (2) G-P(sol) polarization free energy of solvation -60.795 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.986 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.091 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.705 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.077 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds