Wall clock time and date at job start Mon Mar 30 2020 02:13:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31000 * 1 3 3 C 1.50706 * 119.99532 * 2 1 4 4 C 1.52999 * 109.46807 * 95.00173 * 3 2 1 5 5 C 1.50694 * 119.99965 * 179.97438 * 2 1 3 6 6 N 1.46897 * 109.47194 * 95.00143 * 5 2 1 7 7 C 1.48813 * 111.18681 * 52.66331 * 6 5 2 8 8 C 1.54933 * 103.35205 * 159.50572 * 7 6 5 9 9 C 1.54594 * 102.91997 * 322.69117 * 8 7 6 10 10 H 1.09011 * 110.39051 * 262.99616 * 9 8 7 11 11 C 1.50696 * 110.30989 * 140.87684 * 9 8 7 12 12 H 1.08005 * 119.99925 * 244.28300 * 11 9 8 13 13 C 1.37874 * 120.00428 * 64.28222 * 11 9 8 14 14 N 1.31514 * 119.99877 * 0.02562 * 13 11 9 15 15 Si 1.86796 * 120.00237 * 180.02562 * 13 11 9 16 16 H 1.48501 * 109.47441 * 59.99246 * 15 13 11 17 17 H 1.48502 * 109.47254 * 179.97438 * 15 13 11 18 18 H 1.48508 * 109.46917 * 299.99795 * 15 13 11 19 19 C 1.47905 * 111.00050 * 169.99666 * 6 5 2 20 20 H 1.08000 * 120.00319 * 0.02562 * 1 2 3 21 21 H 1.07996 * 119.99919 * 179.97438 * 1 2 3 22 22 H 1.09000 * 109.46465 * 214.99703 * 3 2 1 23 23 H 1.08999 * 109.47064 * 334.99792 * 3 2 1 24 24 H 1.09000 * 109.47224 * 299.99065 * 4 3 2 25 25 H 1.08999 * 109.47619 * 59.99959 * 4 3 2 26 26 H 1.09004 * 109.46980 * 179.97438 * 4 3 2 27 27 H 1.09000 * 109.47620 * 334.99768 * 5 2 1 28 28 H 1.09011 * 109.46935 * 214.99882 * 5 2 1 29 29 H 1.08998 * 110.51915 * 41.07024 * 7 6 5 30 30 H 1.09009 * 110.83927 * 278.09443 * 7 6 5 31 31 H 1.08999 * 110.72416 * 204.32980 * 8 7 6 32 32 H 1.08998 * 110.87653 * 81.12010 * 8 7 6 33 33 H 0.97006 * 120.00195 * 180.02562 * 14 13 11 34 34 H 1.09002 * 109.91668 * 94.80258 * 19 6 5 35 35 H 1.09002 * 109.91761 * 333.70433 * 19 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3052 0.0000 4 6 2.4273 1.6840 1.4370 5 6 2.0635 -1.3051 0.0006 6 7 2.4129 -1.6694 -1.3789 7 6 3.1170 -0.5540 -2.0678 8 6 3.8510 -1.2608 -3.2349 9 6 4.2948 -2.6003 -2.6035 10 1 5.3292 -2.5366 -2.2655 11 6 4.1380 -3.7237 -3.5956 12 1 3.4355 -4.5209 -3.4021 13 6 4.8912 -3.7339 -4.7503 14 7 5.7470 -2.7635 -4.9858 15 14 4.6963 -5.1261 -5.9804 16 1 3.2936 -5.1643 -6.4666 17 1 5.6118 -4.9042 -7.1284 18 1 5.0280 -6.4164 -5.3243 19 6 3.3527 -2.8112 -1.4038 20 1 -0.5401 0.9353 -0.0004 21 1 -0.5400 -0.9353 -0.0004 22 1 2.9741 1.1989 -0.5894 23 1 1.4384 2.0855 -0.4343 24 1 1.5166 1.7903 2.0264 25 1 3.0522 0.9037 1.8714 26 1 2.9726 2.6278 1.4370 27 1 1.4386 -2.0853 0.4353 28 1 2.9743 -1.1985 0.5900 29 1 3.8315 -0.0798 -1.3950 30 1 2.4046 0.1781 -2.4484 31 1 4.7159 -0.6799 -3.5549 32 1 3.1739 -1.4343 -4.0713 33 1 6.2768 -2.7704 -5.7984 34 1 2.8010 -3.7436 -1.5243 35 1 3.9292 -2.8378 -0.4791 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000397567293.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:13:29 Heat of formation + Delta-G solvation = 9.430214 kcal Electronic energy + Delta-G solvation = -14035.298637 eV Core-core repulsion = 11840.132026 eV Total energy + Delta-G solvation = -2195.166611 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 209.148 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -38.49855 -35.79240 -32.85065 -30.97716 -29.47506 -28.19595 -25.35235 -23.73847 -23.47470 -20.15902 -19.34454 -18.12258 -16.48341 -15.15049 -15.02055 -14.59578 -14.38523 -13.90348 -13.32184 -13.05860 -12.50426 -12.33295 -11.98328 -11.74100 -11.31850 -11.17373 -10.92004 -10.84265 -10.59475 -10.50567 -10.33715 -10.06922 -9.63913 -9.26695 -8.91510 -8.74739 -8.35574 -7.62849 -5.97454 -3.99107 2.43474 3.35855 3.39929 3.43203 4.48053 4.81113 4.93783 5.05530 5.32074 5.36698 5.45103 5.59356 5.76870 5.88108 5.91163 5.93587 5.97535 6.10864 6.17290 6.25712 6.29833 6.38074 6.61090 6.81445 6.91340 7.10172 7.17246 7.25754 7.50421 7.68909 7.84079 7.94266 8.06890 8.48492 9.02002 9.63994 11.12731 Molecular weight = 209.15amu Principal moments of inertia in cm(-1) A = 0.060975 B = 0.006959 C = 0.006683 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 459.092505 B = 4022.456265 C = 4188.934238 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.110 4.110 3 C -0.102 4.102 4 C -0.144 4.144 5 C 0.079 3.921 6 N -0.510 5.510 7 C 0.031 3.969 8 C -0.093 4.093 9 C 0.040 3.960 10 H 0.029 0.971 11 C -0.507 4.507 12 H 0.056 0.944 13 C 0.061 3.939 14 N -0.893 5.893 15 Si 0.891 3.109 16 H -0.277 1.277 17 H -0.288 1.288 18 H -0.278 1.278 19 C 0.043 3.957 20 H 0.092 0.908 21 H 0.097 0.903 22 H 0.079 0.921 23 H 0.065 0.935 24 H 0.052 0.948 25 H 0.053 0.947 26 H 0.053 0.947 27 H 0.072 0.928 28 H 0.033 0.967 29 H 0.031 0.969 30 H 0.064 0.936 31 H 0.058 0.942 32 H 0.061 0.939 33 H 0.260 0.740 34 H 0.070 0.930 35 H 0.019 0.981 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.140 6.708 9.291 13.001 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C -0.111 4.111 3 C -0.139 4.139 4 C -0.201 4.201 5 C -0.049 4.049 6 N -0.234 5.234 7 C -0.096 4.096 8 C -0.132 4.132 9 C 0.021 3.979 10 H 0.047 0.953 11 C -0.545 4.545 12 H 0.075 0.925 13 C -0.141 4.141 14 N -0.531 5.531 15 Si 0.719 3.281 16 H -0.203 1.203 17 H -0.214 1.214 18 H -0.203 1.203 19 C -0.084 4.084 20 H 0.110 0.890 21 H 0.115 0.885 22 H 0.097 0.903 23 H 0.084 0.916 24 H 0.071 0.929 25 H 0.073 0.927 26 H 0.072 0.928 27 H 0.090 0.910 28 H 0.051 0.949 29 H 0.049 0.951 30 H 0.082 0.918 31 H 0.076 0.924 32 H 0.080 0.920 33 H 0.069 0.931 34 H 0.089 0.911 35 H 0.037 0.963 Dipole moment (debyes) X Y Z Total from point charges -6.481 6.623 8.907 12.854 hybrid contribution 0.655 -0.526 -0.286 0.887 sum -5.826 6.098 8.621 12.060 Atomic orbital electron populations 1.23585 0.95142 1.01349 1.02381 1.21648 0.95372 0.95065 0.98987 1.20884 1.00951 0.94541 0.97534 1.21712 1.01192 1.00958 0.96270 1.21294 0.98089 0.93925 0.91546 1.64958 1.40276 1.05804 1.12370 1.23487 0.95624 0.93726 0.96789 1.22419 0.98173 0.97067 0.95536 1.19485 0.93455 0.93824 0.91095 0.95257 1.21149 1.22040 1.07363 1.03993 0.92550 1.24978 0.95145 0.95915 0.98039 1.69960 1.24833 1.32082 1.26240 0.86673 0.77960 0.82658 0.80788 1.20251 1.21406 1.20345 1.23131 0.93466 0.93582 0.98250 0.89011 0.88471 0.90262 0.91637 0.92916 0.92748 0.92758 0.90960 0.94895 0.95088 0.91809 0.92375 0.92040 0.93074 0.91138 0.96251 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.46 13.88 29.01 0.40 -2.05 16 2 C -0.11 -1.58 4.09 -101.07 -0.41 -1.99 16 3 C -0.10 -1.31 5.60 -27.88 -0.16 -1.46 16 4 C -0.14 -1.57 9.89 37.16 0.37 -1.20 16 5 C 0.08 1.30 5.23 -4.98 -0.03 1.27 16 6 N -0.51 -10.15 5.40 -231.64 -1.25 -11.40 16 7 C 0.03 0.62 4.61 -1.74 -0.01 0.61 16 8 C -0.09 -2.23 5.75 -24.87 -0.14 -2.37 16 9 C 0.04 1.03 2.87 -90.42 -0.26 0.77 16 10 H 0.03 0.80 8.14 -51.92 -0.42 0.38 16 11 C -0.51 -14.14 8.37 -34.44 -0.29 -14.43 16 12 H 0.06 1.56 7.34 -52.48 -0.39 1.17 16 13 C 0.06 1.70 5.34 -17.82 -0.10 1.61 16 14 N -0.89 -25.92 12.63 55.43 0.70 -25.22 16 15 Si 0.89 21.59 29.54 -169.99 -5.02 16.57 16 16 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 17 H -0.29 -6.93 7.11 56.52 0.40 -6.52 16 18 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 19 C 0.04 0.94 6.34 -2.75 -0.02 0.92 16 20 H 0.09 1.05 7.99 -52.49 -0.42 0.63 16 21 H 0.10 1.27 7.99 -52.49 -0.42 0.85 16 22 H 0.08 1.11 5.13 -51.93 -0.27 0.85 16 23 H 0.06 0.78 7.99 -51.93 -0.41 0.36 16 24 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 25 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 26 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 27 H 0.07 1.13 7.99 -51.93 -0.41 0.71 16 28 H 0.03 0.54 7.81 -51.92 -0.41 0.13 16 29 H 0.03 0.58 6.42 -51.93 -0.33 0.25 16 30 H 0.06 1.20 7.60 -51.92 -0.39 0.80 16 31 H 0.06 1.44 8.12 -51.93 -0.42 1.02 16 32 H 0.06 1.59 7.85 -51.93 -0.41 1.18 16 33 H 0.26 7.21 8.31 -40.82 -0.34 6.88 16 34 H 0.07 1.58 7.39 -51.93 -0.38 1.19 16 35 H 0.02 0.39 7.57 -51.93 -0.39 0.00 16 LS Contribution 278.93 15.07 4.20 4.20 Total: -1.00 -28.53 278.93 -7.89 -36.42 By element: Atomic # 1 Polarization: 3.66 SS G_CDS: -5.89 Total: -2.23 kcal Atomic # 6 Polarization: -17.71 SS G_CDS: -0.64 Total: -18.35 kcal Atomic # 7 Polarization: -36.07 SS G_CDS: -0.55 Total: -36.62 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -5.02 Total: 16.57 kcal Total LS contribution 4.20 Total: 4.20 kcal Total: -28.53 -7.89 -36.42 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397567293.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.850 kcal (2) G-P(sol) polarization free energy of solvation -28.531 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.320 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.889 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.420 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.430 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds