Wall clock time and date at job start Mon Mar 30 2020 02:19:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30994 * 1 3 3 C 1.50694 * 119.99964 * 2 1 4 4 C 1.53010 * 109.46897 * 125.00219 * 3 2 1 5 5 H 1.08995 * 110.27271 * 307.08639 * 4 3 2 6 6 C 1.54597 * 110.39106 * 69.23638 * 4 3 2 7 7 C 1.54934 * 102.92270 * 140.91817 * 6 4 3 8 8 N 1.48539 * 103.22340 * 322.58191 * 7 6 4 9 9 C 1.46906 * 110.99911 * 159.72267 * 8 7 6 10 10 C 1.53002 * 109.47053 * 52.60113 * 9 8 7 11 11 C 1.50696 * 109.46999 * 179.97438 * 10 9 8 12 12 H 1.08000 * 120.00290 * 0.02562 * 11 10 9 13 13 C 1.37875 * 120.00355 * 180.02562 * 11 10 9 14 14 N 1.31514 * 120.00777 * 180.02562 * 13 11 10 15 15 Si 1.86811 * 119.99592 * 0.02562 * 13 11 10 16 16 H 1.48506 * 109.46642 * 90.00053 * 15 13 11 17 17 H 1.48502 * 109.47012 * 209.99745 * 15 13 11 18 18 H 1.48495 * 109.47152 * 329.99991 * 15 13 11 19 19 C 1.47897 * 105.82268 * 39.21048 * 8 7 6 20 20 H 1.08002 * 120.00364 * 179.97438 * 1 2 3 21 21 H 1.07998 * 119.99940 * 359.97438 * 1 2 3 22 22 H 1.07998 * 119.99940 * 180.02562 * 2 1 3 23 23 H 1.08995 * 109.47501 * 5.00466 * 3 2 1 24 24 H 1.09005 * 109.47196 * 244.99579 * 3 2 1 25 25 H 1.09000 * 110.72357 * 259.27335 * 6 4 3 26 26 H 1.08998 * 110.72956 * 22.37921 * 6 4 3 27 27 H 1.08998 * 110.66959 * 204.15351 * 7 6 4 28 28 H 1.08992 * 110.66980 * 81.01654 * 7 6 4 29 29 H 1.08992 * 109.47459 * 172.60196 * 9 8 7 30 30 H 1.09004 * 109.47040 * 292.60346 * 9 8 7 31 31 H 1.09001 * 109.47142 * 300.00160 * 10 9 8 32 32 H 1.09004 * 109.47006 * 60.00213 * 10 9 8 33 33 H 0.96999 * 120.00276 * 180.02562 * 14 13 11 34 34 H 1.08997 * 109.92311 * 94.01773 * 19 8 7 35 35 H 1.08999 * 109.91892 * 215.31512 * 19 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0634 1.3051 0.0000 4 6 3.0350 1.3330 1.1817 5 1 2.5077 1.1116 2.1095 6 6 4.1812 0.3193 0.9607 7 6 5.4208 1.0743 1.5027 8 7 5.1739 2.4778 1.0835 9 6 5.9655 3.4154 1.8911 10 6 7.4362 2.9944 1.8661 11 6 8.2483 3.9566 2.6941 12 1 7.7639 4.7853 3.1891 13 6 9.6098 3.7792 2.8198 14 7 10.3185 4.6186 3.5428 15 14 10.4479 2.3462 1.9630 16 1 10.8784 2.7649 0.6048 17 1 11.6342 1.9241 2.7502 18 1 9.4973 1.2107 1.8529 19 6 3.7252 2.7066 1.2738 20 1 -0.5401 -0.9353 -0.0004 21 1 -0.5400 0.9353 0.0004 22 1 1.8499 -0.9353 -0.0004 23 1 1.3586 2.1316 0.0896 24 1 2.6213 1.4025 -0.9314 25 1 4.0050 -0.5925 1.5314 26 1 4.2970 0.0929 -0.0992 27 1 6.3340 0.6917 1.0468 28 1 5.4717 1.0006 2.5889 29 1 5.8682 4.4204 1.4807 30 1 5.6023 3.4060 2.9189 31 1 7.5335 1.9894 2.2766 32 1 7.7994 3.0038 0.8384 33 1 11.2764 4.4938 3.6309 34 1 3.5444 3.1478 2.2540 35 1 3.3473 3.3652 0.4918 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000599526503.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:19:59 Heat of formation + Delta-G solvation = 6.789441 kcal Electronic energy + Delta-G solvation = -13619.216419 eV Core-core repulsion = 11423.935295 eV Total energy + Delta-G solvation = -2195.281124 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 209.148 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -39.00655 -35.50079 -33.35191 -31.85433 -29.35168 -29.12924 -25.66342 -23.88609 -21.77402 -20.19864 -19.78156 -19.42369 -16.85179 -15.98353 -15.19824 -14.82284 -14.22596 -13.87040 -13.69861 -13.19899 -12.95894 -12.73442 -12.23299 -12.00589 -11.66272 -11.35860 -11.12452 -10.85444 -10.69832 -10.62432 -10.48756 -10.08958 -9.75509 -9.71582 -9.40435 -9.17879 -8.52498 -7.88912 -6.03474 -4.01623 2.14710 3.33093 3.39754 3.44036 4.46786 4.50830 4.59292 4.83778 4.92629 5.05706 5.19368 5.31078 5.45953 5.56275 5.60278 5.76124 5.83114 5.87648 6.02512 6.05200 6.12410 6.17032 6.31566 6.35268 6.42875 6.49998 6.65900 6.77076 7.16634 7.30770 7.48655 7.62979 7.86684 8.54259 9.00618 9.58988 11.09951 Molecular weight = 209.15amu Principal moments of inertia in cm(-1) A = 0.071799 B = 0.005825 C = 0.005512 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 389.881464 B = 4806.008089 C = 5078.665122 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.145 4.145 3 C -0.085 4.085 4 C -0.094 4.094 5 H 0.071 0.929 6 C -0.119 4.119 7 C 0.037 3.963 8 N -0.521 5.521 9 C 0.061 3.939 10 C -0.011 4.011 11 C -0.521 4.521 12 H 0.071 0.929 13 C 0.067 3.933 14 N -0.904 5.904 15 Si 0.882 3.118 16 H -0.276 1.276 17 H -0.288 1.288 18 H -0.266 1.266 19 C 0.038 3.962 20 H 0.093 0.907 21 H 0.094 0.906 22 H 0.107 0.893 23 H 0.065 0.935 24 H 0.077 0.923 25 H 0.065 0.935 26 H 0.072 0.928 27 H 0.080 0.920 28 H 0.044 0.956 29 H 0.068 0.932 30 H 0.027 0.973 31 H 0.016 0.984 32 H 0.020 0.980 33 H 0.263 0.737 34 H 0.041 0.959 35 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.103 -9.352 -6.199 19.627 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.242 4.242 2 C -0.163 4.163 3 C -0.122 4.122 4 C -0.113 4.113 5 H 0.090 0.910 6 C -0.157 4.157 7 C -0.091 4.091 8 N -0.245 5.245 9 C -0.066 4.066 10 C -0.049 4.049 11 C -0.560 4.560 12 H 0.089 0.911 13 C -0.134 4.134 14 N -0.543 5.543 15 Si 0.709 3.291 16 H -0.202 1.202 17 H -0.215 1.215 18 H -0.190 1.190 19 C -0.090 4.090 20 H 0.112 0.888 21 H 0.113 0.887 22 H 0.125 0.875 23 H 0.084 0.916 24 H 0.096 0.904 25 H 0.083 0.917 26 H 0.091 0.909 27 H 0.099 0.901 28 H 0.062 0.938 29 H 0.086 0.914 30 H 0.046 0.954 31 H 0.034 0.966 32 H 0.038 0.962 33 H 0.073 0.927 34 H 0.059 0.941 35 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -15.762 -9.203 -6.669 19.433 hybrid contribution 0.362 -0.738 0.558 0.993 sum -15.401 -9.941 -6.112 19.322 Atomic orbital electron populations 1.23812 0.95998 1.01579 1.02772 1.23032 0.95903 0.98870 0.98456 1.20859 0.97660 0.94875 0.98787 1.21982 0.95685 0.95544 0.98065 0.91040 1.22601 0.94295 0.97237 1.01566 1.23174 0.98134 0.89391 0.98405 1.64869 1.03596 1.02894 1.53190 1.22305 0.95272 0.95435 0.93594 1.19625 0.91079 0.96977 0.97181 1.21089 0.92451 1.12144 1.30277 0.91123 1.25001 0.97371 0.96121 0.94894 1.69915 1.06960 1.37087 1.40362 0.86748 0.79038 0.83530 0.79789 1.20193 1.21459 1.19042 1.22942 0.89589 0.96295 1.00202 0.88826 0.88742 0.87479 0.91609 0.90422 0.91669 0.90881 0.90117 0.93779 0.91357 0.95446 0.96558 0.96205 0.92733 0.94060 0.90753 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.77 14.32 29.02 0.42 -1.36 16 2 C -0.14 -1.37 9.19 -36.03 -0.33 -1.70 16 3 C -0.08 -0.88 4.82 -27.88 -0.13 -1.01 16 4 C -0.09 -1.13 2.98 -89.25 -0.27 -1.40 16 5 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 6 C -0.12 -1.51 6.15 -24.87 -0.15 -1.66 16 7 C 0.04 0.61 5.10 -1.90 -0.01 0.60 16 8 N -0.52 -9.34 5.40 -230.45 -1.24 -10.58 16 9 C 0.06 1.29 4.97 -3.82 -0.02 1.27 16 10 C -0.01 -0.27 3.70 -27.88 -0.10 -0.37 16 11 C -0.52 -15.17 9.66 -34.44 -0.33 -15.50 16 12 H 0.07 2.20 7.99 -52.49 -0.42 1.78 16 13 C 0.07 1.99 5.47 -17.82 -0.10 1.89 16 14 N -0.90 -28.25 13.96 55.43 0.77 -27.48 16 15 Si 0.88 22.13 27.47 -169.99 -4.67 17.46 16 16 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 17 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 18 H -0.27 -6.41 6.54 56.52 0.37 -6.04 16 19 C 0.04 0.55 6.36 -2.75 -0.02 0.54 16 20 H 0.09 0.70 8.06 -52.49 -0.42 0.28 16 21 H 0.09 0.77 7.84 -52.49 -0.41 0.36 16 22 H 0.11 0.97 7.94 -52.49 -0.42 0.55 16 23 H 0.07 0.64 7.79 -51.93 -0.40 0.24 16 24 H 0.08 0.84 8.00 -51.93 -0.42 0.42 16 25 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 26 H 0.07 0.90 7.77 -51.93 -0.40 0.49 16 27 H 0.08 1.39 7.66 -51.93 -0.40 1.00 16 28 H 0.04 0.75 8.00 -51.93 -0.42 0.34 16 29 H 0.07 1.45 8.14 -51.93 -0.42 1.03 16 30 H 0.03 0.58 7.81 -51.93 -0.41 0.18 16 31 H 0.02 0.40 5.85 -51.93 -0.30 0.09 16 32 H 0.02 0.49 7.57 -51.93 -0.39 0.10 16 33 H 0.26 7.67 8.31 -40.82 -0.34 7.33 16 34 H 0.04 0.61 7.57 -51.93 -0.39 0.22 16 35 H 0.07 1.02 7.68 -51.93 -0.40 0.62 16 LS Contribution 280.56 15.07 4.23 4.23 Total: -1.00 -30.54 280.56 -8.00 -38.54 By element: Atomic # 1 Polarization: 2.58 SS G_CDS: -6.04 Total: -3.45 kcal Atomic # 6 Polarization: -17.66 SS G_CDS: -1.05 Total: -18.71 kcal Atomic # 7 Polarization: -37.59 SS G_CDS: -0.47 Total: -38.06 kcal Atomic # 14 Polarization: 22.13 SS G_CDS: -4.67 Total: 17.46 kcal Total LS contribution 4.23 Total: 4.23 kcal Total: -30.54 -8.00 -38.54 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000599526503.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.330 kcal (2) G-P(sol) polarization free energy of solvation -30.545 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.785 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.996 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.541 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.789 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds