Wall clock time and date at job start Mon Mar 30 2020 02:19:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30994 * 1 3 3 C 1.50694 * 119.99964 * 2 1 4 4 C 1.53010 * 109.46897 * 125.00219 * 3 2 1 5 5 H 1.08995 * 110.27271 * 307.08639 * 4 3 2 6 6 C 1.54597 * 110.39106 * 69.23638 * 4 3 2 7 7 C 1.54934 * 102.92270 * 140.91817 * 6 4 3 8 8 N 1.48539 * 103.22340 * 322.58191 * 7 6 4 9 9 C 1.46906 * 110.99911 * 159.72267 * 8 7 6 10 10 C 1.53002 * 109.47053 * 52.60113 * 9 8 7 11 11 C 1.50696 * 109.46999 * 179.97438 * 10 9 8 12 12 H 1.08000 * 120.00290 * 0.02562 * 11 10 9 13 13 C 1.37875 * 120.00355 * 180.02562 * 11 10 9 14 14 N 1.31514 * 120.00777 * 180.02562 * 13 11 10 15 15 Si 1.86811 * 119.99592 * 0.02562 * 13 11 10 16 16 H 1.48506 * 109.46642 * 90.00053 * 15 13 11 17 17 H 1.48502 * 109.47012 * 209.99745 * 15 13 11 18 18 H 1.48495 * 109.47152 * 329.99991 * 15 13 11 19 19 C 1.47897 * 105.82268 * 39.21048 * 8 7 6 20 20 H 1.08002 * 120.00364 * 179.97438 * 1 2 3 21 21 H 1.07998 * 119.99940 * 359.97438 * 1 2 3 22 22 H 1.07998 * 119.99940 * 180.02562 * 2 1 3 23 23 H 1.08995 * 109.47501 * 5.00466 * 3 2 1 24 24 H 1.09005 * 109.47196 * 244.99579 * 3 2 1 25 25 H 1.09000 * 110.72357 * 259.27335 * 6 4 3 26 26 H 1.08998 * 110.72956 * 22.37921 * 6 4 3 27 27 H 1.08998 * 110.66959 * 204.15351 * 7 6 4 28 28 H 1.08992 * 110.66980 * 81.01654 * 7 6 4 29 29 H 1.08992 * 109.47459 * 172.60196 * 9 8 7 30 30 H 1.09004 * 109.47040 * 292.60346 * 9 8 7 31 31 H 1.09001 * 109.47142 * 300.00160 * 10 9 8 32 32 H 1.09004 * 109.47006 * 60.00213 * 10 9 8 33 33 H 0.96999 * 120.00276 * 180.02562 * 14 13 11 34 34 H 1.08997 * 109.92311 * 94.01773 * 19 8 7 35 35 H 1.08999 * 109.91892 * 215.31512 * 19 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0634 1.3051 0.0000 4 6 3.0350 1.3330 1.1817 5 1 2.5077 1.1116 2.1095 6 6 4.1812 0.3193 0.9607 7 6 5.4208 1.0743 1.5027 8 7 5.1739 2.4778 1.0835 9 6 5.9655 3.4154 1.8911 10 6 7.4362 2.9944 1.8661 11 6 8.2483 3.9566 2.6941 12 1 7.7639 4.7853 3.1891 13 6 9.6098 3.7792 2.8198 14 7 10.3185 4.6186 3.5428 15 14 10.4479 2.3462 1.9630 16 1 10.8784 2.7649 0.6048 17 1 11.6342 1.9241 2.7502 18 1 9.4973 1.2107 1.8529 19 6 3.7252 2.7066 1.2738 20 1 -0.5401 -0.9353 -0.0004 21 1 -0.5400 0.9353 0.0004 22 1 1.8499 -0.9353 -0.0004 23 1 1.3586 2.1316 0.0896 24 1 2.6213 1.4025 -0.9314 25 1 4.0050 -0.5925 1.5314 26 1 4.2970 0.0929 -0.0992 27 1 6.3340 0.6917 1.0468 28 1 5.4717 1.0006 2.5889 29 1 5.8682 4.4204 1.4807 30 1 5.6023 3.4060 2.9189 31 1 7.5335 1.9894 2.2766 32 1 7.7994 3.0038 0.8384 33 1 11.2764 4.4938 3.6309 34 1 3.5444 3.1478 2.2540 35 1 3.3473 3.3652 0.4918 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000599526503.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:19:59 Heat of formation + Delta-G solvation = -12.685213 kcal Electronic energy + Delta-G solvation = -13620.060903 eV Core-core repulsion = 11423.935295 eV Total energy + Delta-G solvation = -2196.125608 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 209.148 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.22386 -36.63102 -35.15270 -33.46653 -30.92969 -30.31112 -27.04782 -25.35998 -23.33817 -21.32303 -21.19323 -20.32362 -19.02543 -16.99479 -16.63135 -16.21079 -15.98154 -15.31268 -14.74163 -14.58357 -14.43181 -14.07719 -13.78126 -13.35207 -13.00320 -12.78649 -12.49975 -12.31824 -11.96835 -11.82238 -11.71246 -11.61210 -11.55783 -11.33638 -11.28333 -10.78954 -10.13230 -9.32585 -8.32290 -6.37203 1.35172 1.36398 1.47765 1.48921 2.34556 3.02970 3.15488 3.63330 3.78322 3.96749 4.25571 4.34581 4.37604 4.41686 4.47179 4.61255 4.64348 4.75037 4.89415 4.93947 4.98473 5.03685 5.10809 5.14868 5.24439 5.26385 5.38586 5.44875 5.58864 5.82802 5.96538 6.03433 6.14749 6.27158 6.70175 7.27733 8.84494 Molecular weight = 209.15amu Principal moments of inertia in cm(-1) A = 0.071799 B = 0.005825 C = 0.005512 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 389.881464 B = 4806.008089 C = 5078.665122 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.158 4.158 3 C -0.078 4.078 4 C -0.086 4.086 5 H 0.078 0.922 6 C -0.108 4.108 7 C 0.028 3.972 8 N -0.529 5.529 9 C 0.073 3.927 10 C -0.002 4.002 11 C -0.536 4.536 12 H 0.031 0.969 13 C 0.007 3.993 14 N -0.950 5.950 15 Si 0.953 3.047 16 H -0.266 1.266 17 H -0.281 1.281 18 H -0.248 1.248 19 C 0.034 3.966 20 H 0.105 0.895 21 H 0.098 0.902 22 H 0.113 0.887 23 H 0.071 0.929 24 H 0.073 0.927 25 H 0.085 0.915 26 H 0.080 0.920 27 H 0.071 0.929 28 H 0.034 0.966 29 H 0.059 0.941 30 H 0.019 0.981 31 H 0.021 0.979 32 H 0.019 0.981 33 H 0.268 0.732 34 H 0.036 0.964 35 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.317 -11.548 -7.491 22.122 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C -0.176 4.176 3 C -0.116 4.116 4 C -0.105 4.105 5 H 0.097 0.903 6 C -0.146 4.146 7 C -0.099 4.099 8 N -0.253 5.253 9 C -0.055 4.055 10 C -0.040 4.040 11 C -0.575 4.575 12 H 0.049 0.951 13 C -0.190 4.190 14 N -0.590 5.590 15 Si 0.776 3.224 16 H -0.191 1.191 17 H -0.207 1.207 18 H -0.171 1.171 19 C -0.093 4.093 20 H 0.124 0.876 21 H 0.117 0.883 22 H 0.131 0.869 23 H 0.090 0.910 24 H 0.092 0.908 25 H 0.104 0.896 26 H 0.099 0.901 27 H 0.089 0.911 28 H 0.052 0.948 29 H 0.078 0.922 30 H 0.037 0.963 31 H 0.040 0.960 32 H 0.038 0.962 33 H 0.077 0.923 34 H 0.054 0.946 35 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -17.004 -11.402 -7.967 21.969 hybrid contribution 0.673 0.032 1.005 1.210 sum -16.331 -11.370 -6.962 21.082 Atomic orbital electron populations 1.23998 0.95879 1.02429 1.01247 1.23018 0.96205 0.98535 0.99792 1.20780 0.97352 0.95838 0.97604 1.21935 0.95695 0.93474 0.99349 0.90323 1.22565 0.92293 0.97593 1.02130 1.23260 0.99752 0.88994 0.97923 1.64821 1.05231 1.03057 1.52240 1.22006 0.93887 0.95938 0.93700 1.19484 0.92654 0.95884 0.95939 1.21412 0.93307 1.12072 1.30692 0.95071 1.25994 0.98117 0.99309 0.95594 1.70061 1.07576 1.39362 1.42037 0.85616 0.78107 0.79948 0.78718 1.19116 1.20657 1.17150 1.23053 0.87708 0.98309 1.00273 0.87625 0.88345 0.86915 0.91008 0.90849 0.89628 0.90117 0.91072 0.94781 0.92201 0.96324 0.96048 0.96248 0.92347 0.94569 0.89862 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -2.85 14.32 67.79 0.97 -1.88 16 2 C -0.16 -2.52 9.19 25.65 0.24 -2.28 16 3 C -0.08 -1.41 4.82 29.85 0.14 -1.27 16 4 C -0.09 -1.85 2.98 -9.91 -0.03 -1.88 16 5 H 0.08 1.63 8.14 -2.39 -0.02 1.61 16 6 C -0.11 -2.44 6.15 31.80 0.20 -2.25 16 7 C 0.03 0.89 5.10 86.65 0.44 1.34 16 8 N -0.53 -18.45 5.40 -883.01 -4.76 -23.21 16 9 C 0.07 3.09 4.97 86.30 0.43 3.52 16 10 C 0.00 -0.10 3.70 29.85 0.11 0.01 16 11 C -0.54 -32.03 9.66 25.60 0.25 -31.78 16 12 H 0.03 2.04 7.99 -2.91 -0.02 2.01 16 13 C 0.01 0.41 5.47 84.65 0.46 0.87 16 14 N -0.95 -60.63 13.96 21.45 0.30 -60.33 16 15 Si 0.95 45.30 27.47 68.60 1.88 47.18 16 16 H -0.27 -12.18 7.11 99.48 0.71 -11.48 16 17 H -0.28 -12.95 7.11 99.48 0.71 -12.24 16 18 H -0.25 -10.98 6.54 99.48 0.65 -10.33 16 19 C 0.03 0.95 6.36 86.45 0.55 1.50 16 20 H 0.11 1.25 8.06 -2.91 -0.02 1.23 16 21 H 0.10 1.32 7.84 -2.91 -0.02 1.29 16 22 H 0.11 1.67 7.94 -2.91 -0.02 1.65 16 23 H 0.07 1.21 7.79 -2.39 -0.02 1.19 16 24 H 0.07 1.39 8.00 -2.38 -0.02 1.38 16 25 H 0.09 1.62 8.14 -2.39 -0.02 1.60 16 26 H 0.08 1.73 7.77 -2.39 -0.02 1.71 16 27 H 0.07 2.35 7.66 -2.39 -0.02 2.33 16 28 H 0.03 1.13 8.00 -2.39 -0.02 1.11 16 29 H 0.06 2.60 8.14 -2.39 -0.02 2.58 16 30 H 0.02 0.81 7.81 -2.38 -0.02 0.79 16 31 H 0.02 1.03 5.85 -2.39 -0.01 1.01 16 32 H 0.02 0.95 7.57 -2.38 -0.02 0.93 16 33 H 0.27 15.84 8.31 -92.71 -0.77 15.07 16 34 H 0.04 1.04 7.57 -2.39 -0.02 1.02 16 35 H 0.08 2.15 7.68 -2.39 -0.02 2.13 16 Total: -1.00 -66.00 280.56 2.14 -63.86 By element: Atomic # 1 Polarization: 5.64 SS G_CDS: 0.96 Total: 6.60 kcal Atomic # 6 Polarization: -37.86 SS G_CDS: 3.76 Total: -34.10 kcal Atomic # 7 Polarization: -79.07 SS G_CDS: -4.47 Total: -83.54 kcal Atomic # 14 Polarization: 45.30 SS G_CDS: 1.88 Total: 47.18 kcal Total: -66.00 2.14 -63.86 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000599526503.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.172 kcal (2) G-P(sol) polarization free energy of solvation -65.995 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.824 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.139 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.857 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.685 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds