Wall clock time and date at job start Mon Mar 30 2020 02:38:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52994 * 109.46814 * 2 1 4 4 H 1.09002 * 109.46961 * 177.80289 * 3 2 1 5 5 C 1.50700 * 109.47351 * 57.80444 * 3 2 1 6 6 H 1.08002 * 119.99734 * 239.99750 * 5 3 2 7 7 C 1.37881 * 120.00176 * 59.99427 * 5 3 2 8 8 N 1.31515 * 119.99615 * 0.02562 * 7 5 3 9 9 Si 1.86791 * 120.00010 * 180.02562 * 7 5 3 10 10 H 1.48497 * 109.47443 * 89.99993 * 9 7 5 11 11 H 1.48501 * 109.47147 * 210.00043 * 9 7 5 12 12 H 1.48504 * 109.47352 * 329.99896 * 9 7 5 13 13 N 1.46896 * 109.47408 * 297.79823 * 3 2 1 14 14 C 1.47162 * 111.00293 * 300.16319 * 13 3 2 15 15 C 1.54044 * 106.68545 * 219.18307 * 14 13 3 16 16 H 1.09002 * 115.76104 * 257.76873 * 15 14 13 17 17 C 1.55727 * 112.75177 * 119.01960 * 15 14 13 18 18 C 1.53720 * 87.63632 * 281.19933 * 17 15 14 19 19 C 1.53601 * 87.31843 * 335.34964 * 18 17 15 20 20 H 1.08999 * 115.80412 * 266.29929 * 19 18 17 21 21 C 1.47074 * 111.00311 * 178.51007 * 13 3 2 22 22 H 1.09008 * 109.46874 * 174.52468 * 1 2 3 23 23 H 1.08996 * 109.47650 * 54.52302 * 1 2 3 24 24 H 1.09005 * 109.46657 * 294.51511 * 1 2 3 25 25 H 1.08997 * 109.47591 * 120.00465 * 2 1 3 26 26 H 1.09003 * 109.47177 * 240.00308 * 2 1 3 27 27 H 0.96999 * 119.99452 * 180.02562 * 8 7 5 28 28 H 1.08994 * 110.01186 * 338.48725 * 14 13 3 29 29 H 1.08994 * 110.01651 * 99.87420 * 14 13 3 30 30 H 1.09002 * 112.74784 * 166.56974 * 17 15 14 31 31 H 1.08998 * 114.21012 * 36.05788 * 17 15 14 32 32 H 1.09004 * 113.57115 * 220.73711 * 18 17 15 33 33 H 1.08994 * 113.64852 * 89.97555 * 18 17 15 34 34 H 1.08998 * 109.77393 * 243.44751 * 21 13 3 35 35 H 1.09000 * 109.76782 * 4.18109 * 21 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 3.1292 1.4427 0.0394 5 6 1.4936 2.1684 1.2023 6 1 0.8769 3.0451 1.0696 7 6 1.7811 1.7135 2.4718 8 7 2.5324 0.6463 2.6333 9 14 1.1033 2.6129 3.9620 10 1 -0.2185 2.0424 4.3257 11 1 2.0408 2.4567 5.1031 12 1 0.9490 4.0549 3.6421 13 7 1.5942 2.1194 -1.2251 14 6 2.1067 1.4345 -2.4225 15 6 2.4982 2.5343 -3.4276 16 1 1.7923 2.7064 -4.2402 17 6 4.0112 2.5035 -3.7951 18 6 4.2852 3.2090 -2.4571 19 6 2.8478 3.7458 -2.5283 20 1 2.7313 4.7321 -2.9774 21 6 2.0369 3.5218 -1.2433 22 1 -0.3633 -1.0231 -0.0981 23 1 -0.3634 0.5964 -0.8368 24 1 -0.3633 0.4264 0.9351 25 1 1.8934 -0.5139 0.8899 26 1 1.8934 -0.5138 -0.8900 27 1 2.7343 0.3260 3.5264 28 1 2.9807 0.8364 -2.1647 29 1 1.3313 0.7982 -2.8489 30 1 4.2458 3.1149 -4.6664 31 1 4.4363 1.5016 -3.8548 32 1 5.0451 3.9877 -2.5226 33 1 4.4538 2.5227 -1.6274 34 1 1.1700 4.1824 -1.2346 35 1 2.6619 3.7224 -0.3731 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000688297322.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:38:25 Heat of formation + Delta-G solvation = 19.459584 kcal Electronic energy + Delta-G solvation = -14721.188539 eV Core-core repulsion = 12526.456834 eV Total energy + Delta-G solvation = -2194.731705 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 209.148 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -40.01236 -35.65966 -32.45322 -30.81423 -28.59502 -27.07246 -25.09949 -23.33801 -22.90751 -20.69142 -19.02479 -18.11061 -16.18388 -15.76061 -15.01320 -14.03584 -13.63048 -13.52840 -12.94797 -12.75857 -12.25000 -12.03326 -11.69562 -11.41640 -11.38910 -10.93248 -10.89251 -10.58912 -10.36579 -10.27062 -9.85595 -9.71172 -9.58285 -9.55535 -9.28810 -8.78777 -8.38026 -7.03130 -5.96968 -3.99502 3.32593 3.39205 3.42512 4.43856 4.76383 4.85762 5.03479 5.16911 5.31851 5.44189 5.72259 5.88617 5.92650 6.00050 6.09018 6.16445 6.25831 6.49197 6.50622 6.63125 6.67001 6.72287 6.82893 6.85265 6.94715 7.19192 7.35344 7.49485 7.70335 7.80397 7.90183 8.23519 8.41579 8.66042 9.06394 9.64080 11.09728 Molecular weight = 209.15amu Principal moments of inertia in cm(-1) A = 0.039171 B = 0.010496 C = 0.009448 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 714.651896 B = 2667.077353 C = 2963.033800 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.110 4.110 3 C 0.214 3.786 4 H -0.003 1.003 5 C -0.494 4.494 6 H 0.060 0.940 7 C 0.059 3.941 8 N -0.893 5.893 9 Si 0.892 3.108 10 H -0.281 1.281 11 H -0.288 1.288 12 H -0.275 1.275 13 N -0.522 5.522 14 C 0.064 3.936 15 C -0.124 4.124 16 H 0.084 0.916 17 C -0.131 4.131 18 C -0.134 4.134 19 C -0.131 4.131 20 H 0.091 0.909 21 C 0.064 3.936 22 H 0.013 0.987 23 H 0.045 0.955 24 H 0.054 0.946 25 H 0.089 0.911 26 H 0.012 0.988 27 H 0.259 0.741 28 H 0.040 0.960 29 H 0.063 0.937 30 H 0.073 0.927 31 H 0.063 0.937 32 H 0.061 0.939 33 H 0.082 0.918 34 H 0.058 0.942 35 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.310 2.866 -9.084 9.615 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.148 4.148 3 C 0.108 3.892 4 H 0.014 0.986 5 C -0.533 4.533 6 H 0.079 0.921 7 C -0.142 4.142 8 N -0.533 5.533 9 Si 0.720 3.280 10 H -0.207 1.207 11 H -0.214 1.214 12 H -0.200 1.200 13 N -0.246 5.246 14 C -0.064 4.064 15 C -0.143 4.143 16 H 0.103 0.897 17 C -0.169 4.169 18 C -0.171 4.171 19 C -0.151 4.151 20 H 0.109 0.891 21 C -0.064 4.064 22 H 0.032 0.968 23 H 0.065 0.935 24 H 0.073 0.927 25 H 0.107 0.893 26 H 0.030 0.970 27 H 0.069 0.931 28 H 0.058 0.942 29 H 0.082 0.918 30 H 0.091 0.909 31 H 0.082 0.918 32 H 0.080 0.920 33 H 0.101 0.899 34 H 0.076 0.924 35 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 0.848 2.726 -8.903 9.349 hybrid contribution 0.538 0.429 0.901 1.133 sum 1.386 3.155 -8.002 8.713 Atomic orbital electron populations 1.21450 0.97295 0.97129 1.01808 1.21539 0.95324 0.98200 0.99761 1.19455 0.92888 0.91157 0.85713 0.98574 1.21067 1.30778 1.11782 0.89685 0.92138 1.24897 0.95323 0.95150 0.98804 1.69888 1.37854 1.23369 1.22153 0.86587 0.78748 0.80146 0.82477 1.20734 1.21442 1.19986 1.63224 1.57998 1.00881 1.02529 1.22445 0.97854 0.95326 0.90758 1.23807 0.95535 0.96823 0.98142 0.89727 1.23141 0.96049 1.00437 0.97247 1.22819 0.96445 0.99942 0.97921 1.23617 0.95849 0.97896 0.97711 0.89087 1.22303 0.97057 0.91449 0.95583 0.96776 0.93550 0.92685 0.89319 0.96951 0.93099 0.94179 0.91838 0.90852 0.91800 0.92019 0.89900 0.92382 0.91749 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.72 9.46 37.16 0.35 -2.37 16 2 C -0.11 -2.67 5.26 -26.73 -0.14 -2.81 16 3 C 0.21 5.35 1.33 -68.87 -0.09 5.26 16 4 H 0.00 -0.09 8.05 -51.93 -0.42 -0.51 16 5 C -0.49 -13.35 6.37 -34.44 -0.22 -13.57 16 6 H 0.06 1.66 7.37 -52.49 -0.39 1.27 16 7 C 0.06 1.62 5.30 -17.82 -0.09 1.53 16 8 N -0.89 -25.33 11.34 55.43 0.63 -24.70 16 9 Si 0.89 21.40 29.54 -169.99 -5.02 16.37 16 10 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 11 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 12 H -0.27 -6.52 7.11 56.52 0.40 -6.12 16 13 N -0.52 -11.29 4.22 -226.63 -0.96 -12.25 16 14 C 0.06 1.20 4.81 -3.14 -0.02 1.19 16 15 C -0.12 -1.94 5.33 -87.63 -0.47 -2.41 16 16 H 0.08 1.21 8.14 -51.93 -0.42 0.79 16 17 C -0.13 -1.81 7.56 -24.90 -0.19 -2.00 16 18 C -0.13 -2.08 7.24 -26.04 -0.19 -2.27 16 19 C -0.13 -2.12 4.88 -89.01 -0.43 -2.55 16 20 H 0.09 1.30 8.14 -51.93 -0.42 0.87 16 21 C 0.06 1.28 5.52 -3.42 -0.02 1.26 16 22 H 0.01 0.27 8.14 -51.92 -0.42 -0.15 16 23 H 0.05 1.02 7.51 -51.93 -0.39 0.63 16 24 H 0.05 1.35 7.36 -51.93 -0.38 0.97 16 25 H 0.09 2.39 6.13 -51.93 -0.32 2.07 16 26 H 0.01 0.27 6.86 -51.93 -0.36 -0.09 16 27 H 0.26 7.06 8.31 -40.82 -0.34 6.72 16 28 H 0.04 0.79 6.61 -51.93 -0.34 0.45 16 29 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 30 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 31 H 0.06 0.87 8.09 -51.93 -0.42 0.45 16 32 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 33 H 0.08 1.51 7.65 -51.93 -0.40 1.11 16 34 H 0.06 1.14 8.14 -51.93 -0.42 0.71 16 35 H 0.06 1.42 6.96 -51.93 -0.36 1.06 16 LS Contribution 267.37 15.07 4.03 4.03 Total: -1.00 -27.56 267.37 -8.69 -36.26 By element: Atomic # 1 Polarization: 4.90 SS G_CDS: -5.87 Total: -0.97 kcal Atomic # 6 Polarization: -17.24 SS G_CDS: -1.51 Total: -18.74 kcal Atomic # 7 Polarization: -36.62 SS G_CDS: -0.33 Total: -36.95 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -5.02 Total: 16.37 kcal Total LS contribution 4.03 Total: 4.03 kcal Total: -27.56 -8.69 -36.26 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000688297322.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.716 kcal (2) G-P(sol) polarization free energy of solvation -27.563 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.154 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.694 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.257 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.460 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds