Wall clock time and date at job start Mon Mar 30 2020 02:38:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52994 * 109.46814 * 2 1 4 4 H 1.09002 * 109.46961 * 177.80289 * 3 2 1 5 5 C 1.50700 * 109.47351 * 57.80444 * 3 2 1 6 6 H 1.08002 * 119.99734 * 239.99750 * 5 3 2 7 7 C 1.37881 * 120.00176 * 59.99427 * 5 3 2 8 8 N 1.31515 * 119.99615 * 0.02562 * 7 5 3 9 9 Si 1.86791 * 120.00010 * 180.02562 * 7 5 3 10 10 H 1.48497 * 109.47443 * 89.99993 * 9 7 5 11 11 H 1.48501 * 109.47147 * 210.00043 * 9 7 5 12 12 H 1.48504 * 109.47352 * 329.99896 * 9 7 5 13 13 N 1.46896 * 109.47408 * 297.79823 * 3 2 1 14 14 C 1.47162 * 111.00293 * 300.16319 * 13 3 2 15 15 C 1.54044 * 106.68545 * 219.18307 * 14 13 3 16 16 H 1.09002 * 115.76104 * 257.76873 * 15 14 13 17 17 C 1.55727 * 112.75177 * 119.01960 * 15 14 13 18 18 C 1.53720 * 87.63632 * 281.19933 * 17 15 14 19 19 C 1.53601 * 87.31843 * 335.34964 * 18 17 15 20 20 H 1.08999 * 115.80412 * 266.29929 * 19 18 17 21 21 C 1.47074 * 111.00311 * 178.51007 * 13 3 2 22 22 H 1.09008 * 109.46874 * 174.52468 * 1 2 3 23 23 H 1.08996 * 109.47650 * 54.52302 * 1 2 3 24 24 H 1.09005 * 109.46657 * 294.51511 * 1 2 3 25 25 H 1.08997 * 109.47591 * 120.00465 * 2 1 3 26 26 H 1.09003 * 109.47177 * 240.00308 * 2 1 3 27 27 H 0.96999 * 119.99452 * 180.02562 * 8 7 5 28 28 H 1.08994 * 110.01186 * 338.48725 * 14 13 3 29 29 H 1.08994 * 110.01651 * 99.87420 * 14 13 3 30 30 H 1.09002 * 112.74784 * 166.56974 * 17 15 14 31 31 H 1.08998 * 114.21012 * 36.05788 * 17 15 14 32 32 H 1.09004 * 113.57115 * 220.73711 * 18 17 15 33 33 H 1.08994 * 113.64852 * 89.97555 * 18 17 15 34 34 H 1.08998 * 109.77393 * 243.44751 * 21 13 3 35 35 H 1.09000 * 109.76782 * 4.18109 * 21 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 3.1292 1.4427 0.0394 5 6 1.4936 2.1684 1.2023 6 1 0.8769 3.0451 1.0696 7 6 1.7811 1.7135 2.4718 8 7 2.5324 0.6463 2.6333 9 14 1.1033 2.6129 3.9620 10 1 -0.2185 2.0424 4.3257 11 1 2.0408 2.4567 5.1031 12 1 0.9490 4.0549 3.6421 13 7 1.5942 2.1194 -1.2251 14 6 2.1067 1.4345 -2.4225 15 6 2.4982 2.5343 -3.4276 16 1 1.7923 2.7064 -4.2402 17 6 4.0112 2.5035 -3.7951 18 6 4.2852 3.2090 -2.4571 19 6 2.8478 3.7458 -2.5283 20 1 2.7313 4.7321 -2.9774 21 6 2.0369 3.5218 -1.2433 22 1 -0.3633 -1.0231 -0.0981 23 1 -0.3634 0.5964 -0.8368 24 1 -0.3633 0.4264 0.9351 25 1 1.8934 -0.5139 0.8899 26 1 1.8934 -0.5138 -0.8900 27 1 2.7343 0.3260 3.5264 28 1 2.9807 0.8364 -2.1647 29 1 1.3313 0.7982 -2.8489 30 1 4.2458 3.1149 -4.6664 31 1 4.4363 1.5016 -3.8548 32 1 5.0451 3.9877 -2.5226 33 1 4.4538 2.5227 -1.6274 34 1 1.1700 4.1824 -1.2346 35 1 2.6619 3.7224 -0.3731 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000688297322.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:38:25 Heat of formation + Delta-G solvation = 3.652939 kcal Electronic energy + Delta-G solvation = -14721.873967 eV Core-core repulsion = 12526.456834 eV Total energy + Delta-G solvation = -2195.417133 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 209.148 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -41.43431 -37.43379 -34.34662 -32.70153 -30.11383 -28.84706 -26.83701 -24.97922 -24.44895 -22.28586 -20.87892 -19.48476 -18.07026 -17.29515 -16.91713 -15.77690 -15.36264 -15.10181 -14.54893 -14.32692 -14.04982 -13.67544 -13.38441 -13.05284 -12.85128 -12.77852 -12.48566 -12.42588 -12.27659 -11.93801 -11.53221 -11.37390 -11.19931 -10.98854 -10.90521 -10.80185 -10.48138 -8.81052 -8.08618 -6.17801 1.40114 1.41256 1.50765 2.42547 3.19544 3.39000 3.51927 3.73151 3.91564 3.95461 4.40328 4.53346 4.61846 4.65125 4.71470 4.75284 4.80251 4.88450 4.89684 5.00419 5.08262 5.16301 5.20457 5.29233 5.40140 5.42847 5.52584 5.67033 5.74336 5.76369 5.88333 6.30849 6.47006 6.78290 6.95833 7.49631 8.97194 Molecular weight = 209.15amu Principal moments of inertia in cm(-1) A = 0.039171 B = 0.010496 C = 0.009448 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 714.651896 B = 2667.077353 C = 2963.033800 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C -0.106 4.106 3 C 0.224 3.776 4 H -0.045 1.045 5 C -0.503 4.503 6 H 0.052 0.948 7 C 0.013 3.987 8 N -0.920 5.920 9 Si 0.952 3.048 10 H -0.276 1.276 11 H -0.285 1.285 12 H -0.270 1.270 13 N -0.529 5.529 14 C 0.060 3.940 15 C -0.118 4.118 16 H 0.110 0.890 17 C -0.114 4.114 18 C -0.140 4.140 19 C -0.125 4.125 20 H 0.122 0.878 21 C 0.061 3.939 22 H 0.038 0.962 23 H 0.052 0.948 24 H 0.031 0.969 25 H 0.059 0.941 26 H 0.026 0.974 27 H 0.259 0.741 28 H 0.023 0.977 29 H 0.070 0.930 30 H 0.107 0.893 31 H 0.064 0.936 32 H 0.081 0.919 33 H 0.043 0.957 34 H 0.060 0.940 35 H 0.031 0.969 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.806 3.797 -10.839 11.513 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.145 4.145 3 C 0.117 3.883 4 H -0.028 1.028 5 C -0.541 4.541 6 H 0.070 0.930 7 C -0.185 4.185 8 N -0.560 5.560 9 Si 0.778 3.222 10 H -0.202 1.202 11 H -0.211 1.211 12 H -0.195 1.195 13 N -0.253 5.253 14 C -0.068 4.068 15 C -0.137 4.137 16 H 0.128 0.872 17 C -0.151 4.151 18 C -0.177 4.177 19 C -0.144 4.144 20 H 0.140 0.860 21 C -0.067 4.067 22 H 0.057 0.943 23 H 0.071 0.929 24 H 0.050 0.950 25 H 0.078 0.922 26 H 0.044 0.956 27 H 0.069 0.931 28 H 0.041 0.959 29 H 0.089 0.911 30 H 0.126 0.874 31 H 0.082 0.918 32 H 0.100 0.900 33 H 0.062 0.938 34 H 0.078 0.922 35 H 0.049 0.951 Dipole moment (debyes) X Y Z Total from point charges 0.340 3.662 -10.673 11.289 hybrid contribution 0.714 0.137 1.436 1.610 sum 1.054 3.799 -9.237 10.043 Atomic orbital electron populations 1.21301 0.95739 0.98598 1.00735 1.21421 0.96569 0.97530 0.98937 1.19182 0.90221 0.91886 0.86988 1.02790 1.21242 1.30491 1.11575 0.90805 0.93014 1.25618 0.95627 0.95869 1.01407 1.70021 1.38823 1.24530 1.22618 0.85649 0.78173 0.79176 0.79231 1.20195 1.21097 1.19467 1.63161 1.58144 1.01752 1.02251 1.22510 0.97359 0.96375 0.90567 1.23785 0.97477 0.94666 0.97759 0.87238 1.23120 0.94045 1.00897 0.97036 1.22779 0.96898 1.00084 0.97983 1.23670 0.95346 0.99768 0.95651 0.85966 1.22302 0.97245 0.90539 0.96659 0.94312 0.92884 0.94998 0.92250 0.95582 0.93140 0.95867 0.91133 0.87448 0.91764 0.90001 0.93837 0.92157 0.95070 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.80 9.46 71.98 0.68 -4.12 16 2 C -0.11 -5.27 5.26 30.59 0.16 -5.10 16 3 C 0.22 11.62 1.33 44.17 0.06 11.68 16 4 H -0.05 -2.67 8.05 -2.39 -0.02 -2.69 16 5 C -0.50 -27.94 6.37 25.60 0.16 -27.77 16 6 H 0.05 2.91 7.37 -2.91 -0.02 2.88 16 7 C 0.01 0.73 5.30 84.66 0.45 1.18 16 8 N -0.92 -53.74 11.34 21.45 0.24 -53.49 16 9 Si 0.95 44.51 29.54 68.60 2.03 46.53 16 10 H -0.28 -12.65 7.11 99.48 0.71 -11.94 16 11 H -0.29 -13.12 7.11 99.48 0.71 -12.41 16 12 H -0.27 -12.31 7.11 99.48 0.71 -11.60 16 13 N -0.53 -23.06 4.22 -870.91 -3.68 -26.74 16 14 C 0.06 2.19 4.81 86.61 0.42 2.60 16 15 C -0.12 -3.34 5.33 -8.86 -0.05 -3.39 16 16 H 0.11 2.64 8.14 -2.39 -0.02 2.62 16 17 C -0.11 -2.76 7.56 31.78 0.24 -2.52 16 18 C -0.14 -4.17 7.24 31.04 0.22 -3.95 16 19 C -0.13 -3.77 4.88 -9.75 -0.05 -3.82 16 20 H 0.12 2.99 8.14 -2.39 -0.02 2.97 16 21 C 0.06 2.42 5.52 86.47 0.48 2.90 16 22 H 0.04 1.52 8.14 -2.38 -0.02 1.50 16 23 H 0.05 2.29 7.51 -2.39 -0.02 2.27 16 24 H 0.03 1.55 7.36 -2.38 -0.02 1.53 16 25 H 0.06 3.31 6.13 -2.39 -0.01 3.29 16 26 H 0.03 1.18 6.86 -2.39 -0.02 1.16 16 27 H 0.26 14.48 8.31 -92.71 -0.77 13.71 16 28 H 0.02 0.92 6.61 -2.39 -0.02 0.91 16 29 H 0.07 2.47 8.14 -2.39 -0.02 2.45 16 30 H 0.11 1.98 8.14 -2.39 -0.02 1.96 16 31 H 0.06 1.58 8.09 -2.39 -0.02 1.56 16 32 H 0.08 2.08 8.14 -2.39 -0.02 2.06 16 33 H 0.04 1.64 7.65 -2.39 -0.02 1.62 16 34 H 0.06 2.34 8.14 -2.39 -0.02 2.32 16 35 H 0.03 1.43 6.96 -2.39 -0.02 1.41 16 Total: -1.00 -60.84 267.37 2.41 -58.43 By element: Atomic # 1 Polarization: 6.54 SS G_CDS: 1.04 Total: 7.57 kcal Atomic # 6 Polarization: -35.08 SS G_CDS: 2.78 Total: -32.30 kcal Atomic # 7 Polarization: -76.80 SS G_CDS: -3.43 Total: -80.23 kcal Atomic # 14 Polarization: 44.51 SS G_CDS: 2.03 Total: 46.53 kcal Total: -60.84 2.41 -58.43 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000688297322.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.083 kcal (2) G-P(sol) polarization free energy of solvation -60.835 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.248 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.405 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.430 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.653 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds