Wall clock time and date at job start Mon Mar 30 2020 02:38:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.53000 * 109.47160 * 2 1 4 4 H 1.09000 * 109.46684 * 54.22993 * 3 2 1 5 5 C 1.50701 * 109.47076 * 174.22649 * 3 2 1 6 6 H 1.08006 * 119.99802 * 119.99898 * 5 3 2 7 7 C 1.37874 * 120.00131 * 300.00411 * 5 3 2 8 8 N 1.31505 * 120.00285 * 359.97438 * 7 5 3 9 9 Si 1.86805 * 119.99842 * 180.02562 * 7 5 3 10 10 H 1.48504 * 109.47107 * 89.99644 * 9 7 5 11 11 H 1.48492 * 109.47043 * 209.99694 * 9 7 5 12 12 H 1.48505 * 109.47029 * 330.00003 * 9 7 5 13 13 N 1.46900 * 109.47422 * 294.22867 * 3 2 1 14 14 C 1.46893 * 111.00159 * 152.60864 * 13 3 2 15 15 C 1.52995 * 115.55300 * 158.98199 * 14 13 3 16 16 C 1.53001 * 117.49728 * 34.32996 * 15 14 13 17 17 C 1.52997 * 117.49785 * 325.67510 * 15 14 13 18 18 C 1.52997 * 117.49803 * 13.27502 * 14 13 3 19 19 C 1.53000 * 60.00282 * 252.50959 * 18 14 13 20 20 H 1.09010 * 109.47443 * 177.68161 * 1 2 3 21 21 H 1.08997 * 109.47827 * 57.67536 * 1 2 3 22 22 H 1.09002 * 109.47355 * 297.67548 * 1 2 3 23 23 H 1.08995 * 109.47489 * 120.00271 * 2 1 3 24 24 H 1.09007 * 109.47171 * 240.00435 * 2 1 3 25 25 H 0.96998 * 120.00098 * 179.97438 * 8 7 5 26 26 H 1.00908 * 110.99731 * 28.65452 * 13 3 2 27 27 H 1.08994 * 115.55663 * 179.97438 * 15 14 13 28 28 H 1.09007 * 117.50083 * 0.02562 * 16 15 14 29 29 H 1.08999 * 117.50020 * 145.01847 * 16 15 14 30 30 H 1.08998 * 117.49698 * 214.97714 * 17 15 14 31 31 H 1.09001 * 117.49829 * 359.97244 * 17 15 14 32 32 H 1.08994 * 117.50242 * 359.97438 * 18 14 13 33 33 H 1.08998 * 117.50255 * 145.02151 * 18 14 13 34 34 H 1.08998 * 117.50452 * 252.50977 * 19 18 14 35 35 H 1.08998 * 117.50132 * 107.48760 * 19 18 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.5947 1.9852 0.8338 5 6 3.5401 1.4449 0.1429 6 1 4.1553 1.8860 -0.6275 7 6 4.1274 0.8839 1.2571 8 7 3.3784 0.3472 2.1954 9 14 5.9870 0.8875 1.4345 10 1 6.4148 2.1237 2.1376 11 1 6.4117 -0.3000 2.2184 12 1 6.6128 0.8420 0.0885 13 7 1.6673 2.0937 -1.2630 14 6 1.5311 3.5456 -1.0865 15 6 1.6445 4.3792 -2.3644 16 6 1.0960 3.7701 -3.6562 17 6 2.6077 3.8864 -3.4461 18 6 2.0788 4.1546 0.2057 19 6 0.5678 4.0385 -0.0047 20 1 -0.3634 -1.0269 -0.0416 21 1 -0.3634 0.5495 -0.8683 22 1 -0.3634 0.4773 0.9101 23 1 1.8933 -0.5138 0.8899 24 1 1.8933 -0.5138 -0.8901 25 1 3.7916 -0.0478 2.9790 26 1 0.8208 1.6942 -1.6398 27 1 1.5430 5.4565 -2.2335 28 1 0.6539 2.7755 -3.5957 29 1 0.6343 4.4467 -4.3753 30 1 3.1400 4.6395 -4.0271 31 1 3.1608 2.9684 -3.2472 32 1 2.5399 3.4780 0.9251 33 1 2.5203 5.1494 0.1457 34 1 0.0152 4.9568 -0.2033 35 1 0.0352 3.2854 0.5760 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000697392332.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:38:37 Heat of formation + Delta-G solvation = 48.866786 kcal Electronic energy + Delta-G solvation = -14510.869493 eV Core-core repulsion = 12317.412980 eV Total energy + Delta-G solvation = -2193.456513 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 209.148 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -38.74953 -35.65585 -33.86571 -31.79663 -29.47713 -26.52609 -23.33431 -22.50059 -22.06467 -21.37870 -19.53320 -18.27318 -16.21057 -15.37965 -15.35413 -14.58229 -13.80335 -13.70422 -12.97765 -12.64042 -12.44473 -11.83229 -11.29414 -11.01934 -10.96741 -10.84035 -10.79814 -10.67618 -10.53357 -10.25931 -9.87563 -9.74426 -9.62063 -9.51096 -9.05282 -8.69673 -8.31527 -7.10272 -5.94584 -3.97373 3.33795 3.40652 3.45551 4.12403 4.46624 4.82683 5.06403 5.18176 5.35620 5.41715 5.53092 5.68354 5.92278 5.97633 6.03981 6.16114 6.17228 6.25265 6.28142 6.41245 6.58820 6.64535 6.71974 6.84423 6.86782 7.05299 7.14702 7.27472 7.53664 7.79082 7.95609 8.35527 8.42937 8.77392 9.11206 9.66610 11.10451 Molecular weight = 209.15amu Principal moments of inertia in cm(-1) A = 0.027599 B = 0.011713 C = 0.009987 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1014.304111 B = 2389.931967 C = 2802.962006 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.128 4.128 3 C 0.212 3.788 4 H 0.015 0.985 5 C -0.483 4.483 6 H 0.061 0.939 7 C 0.054 3.946 8 N -0.897 5.897 9 Si 0.892 3.108 10 H -0.283 1.283 11 H -0.289 1.289 12 H -0.275 1.275 13 N -0.646 5.646 14 C 0.095 3.905 15 C -0.107 4.107 16 C -0.179 4.179 17 C -0.162 4.162 18 C -0.165 4.165 19 C -0.228 4.228 20 H 0.036 0.964 21 H 0.035 0.965 22 H 0.042 0.958 23 H 0.100 0.900 24 H 0.039 0.961 25 H 0.259 0.741 26 H 0.319 0.681 27 H 0.096 0.904 28 H 0.093 0.907 29 H 0.081 0.919 30 H 0.080 0.920 31 H 0.110 0.890 32 H 0.129 0.871 33 H 0.079 0.921 34 H 0.079 0.921 35 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.503 5.002 -6.043 9.045 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.167 4.167 3 C 0.105 3.895 4 H 0.033 0.967 5 C -0.522 4.522 6 H 0.080 0.920 7 C -0.146 4.146 8 N -0.538 5.538 9 Si 0.721 3.279 10 H -0.209 1.209 11 H -0.215 1.215 12 H -0.199 1.199 13 N -0.277 5.277 14 C 0.002 3.998 15 C -0.125 4.125 16 C -0.216 4.216 17 C -0.199 4.199 18 C -0.202 4.202 19 C -0.268 4.268 20 H 0.056 0.944 21 H 0.054 0.946 22 H 0.061 0.939 23 H 0.118 0.882 24 H 0.058 0.942 25 H 0.069 0.931 26 H 0.139 0.861 27 H 0.114 0.886 28 H 0.112 0.888 29 H 0.100 0.900 30 H 0.098 0.902 31 H 0.128 0.872 32 H 0.147 0.853 33 H 0.097 0.903 34 H 0.097 0.903 35 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -3.821 4.911 -6.108 8.719 hybrid contribution 0.106 0.067 0.748 0.758 sum -3.715 4.977 -5.360 8.204 Atomic orbital electron populations 1.21887 0.99653 0.99488 0.99731 1.21810 0.91203 1.00600 1.03073 1.19312 0.95595 0.89683 0.84895 0.96716 1.21182 0.91166 1.35797 1.04076 0.92033 1.24941 0.97894 0.95776 0.96014 1.69865 1.34572 1.39746 1.09574 0.86584 0.86065 0.77272 0.78010 1.20922 1.21505 1.19946 1.60421 1.36499 0.99185 1.31588 1.20751 1.01633 0.89574 0.87813 1.21528 1.05513 0.96905 0.88601 1.22814 0.97352 1.02203 0.99271 1.22857 0.92186 1.03696 1.01178 1.23400 0.94638 1.01648 1.00545 1.23488 0.93840 1.02860 1.06645 0.94446 0.94628 0.93902 0.88161 0.94196 0.93147 0.86120 0.88603 0.88825 0.90046 0.90187 0.87184 0.85318 0.90281 0.90253 0.89485 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.91 9.79 37.15 0.36 -2.54 16 2 C -0.13 -2.99 5.34 -26.74 -0.14 -3.13 16 3 C 0.21 5.10 1.45 -68.86 -0.10 5.00 16 4 H 0.02 0.40 5.09 -51.93 -0.26 0.13 16 5 C -0.48 -12.96 7.27 -34.44 -0.25 -13.21 16 6 H 0.06 1.71 7.81 -52.48 -0.41 1.30 16 7 C 0.05 1.46 5.29 -17.82 -0.09 1.37 16 8 N -0.90 -25.10 11.29 55.43 0.63 -24.48 16 9 Si 0.89 21.42 29.54 -169.99 -5.02 16.40 16 10 H -0.28 -6.77 7.11 56.52 0.40 -6.36 16 11 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 12 H -0.27 -6.58 7.11 56.52 0.40 -6.18 16 13 N -0.65 -13.51 5.47 -94.25 -0.52 -14.03 16 14 C 0.10 1.82 2.86 -131.61 -0.38 1.44 16 15 C -0.11 -1.75 5.85 -90.62 -0.53 -2.28 16 16 C -0.18 -2.63 10.02 -26.70 -0.27 -2.89 16 17 C -0.16 -2.58 10.02 -26.70 -0.27 -2.85 16 18 C -0.17 -3.32 9.01 -26.73 -0.24 -3.56 16 19 C -0.23 -4.16 9.59 -26.73 -0.26 -4.42 16 20 H 0.04 0.65 8.14 -51.92 -0.42 0.23 16 21 H 0.03 0.63 6.41 -51.93 -0.33 0.29 16 22 H 0.04 0.84 8.14 -51.93 -0.42 0.42 16 23 H 0.10 2.63 5.94 -51.93 -0.31 2.32 16 24 H 0.04 0.93 8.14 -51.93 -0.42 0.51 16 25 H 0.26 6.99 8.31 -40.82 -0.34 6.65 16 26 H 0.32 6.26 6.05 -39.29 -0.24 6.02 16 27 H 0.10 1.43 8.14 -51.93 -0.42 1.01 16 28 H 0.09 1.42 7.45 -51.92 -0.39 1.04 16 29 H 0.08 1.02 8.14 -51.93 -0.42 0.60 16 30 H 0.08 1.11 8.14 -51.93 -0.42 0.68 16 31 H 0.11 2.02 7.87 -51.93 -0.41 1.61 16 32 H 0.13 3.07 5.19 -51.93 -0.27 2.80 16 33 H 0.08 1.43 8.14 -51.93 -0.42 1.01 16 34 H 0.08 1.27 8.14 -51.93 -0.42 0.85 16 35 H 0.09 1.68 7.42 -51.93 -0.39 1.30 16 LS Contribution 276.78 15.07 4.17 4.17 Total: -1.00 -26.89 276.78 -8.42 -35.31 By element: Atomic # 1 Polarization: 15.22 SS G_CDS: -5.52 Total: 9.70 kcal Atomic # 6 Polarization: -24.91 SS G_CDS: -2.16 Total: -27.07 kcal Atomic # 7 Polarization: -38.61 SS G_CDS: 0.11 Total: -38.50 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -5.02 Total: 16.40 kcal Total LS contribution 4.17 Total: 4.17 kcal Total: -26.89 -8.42 -35.31 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000697392332.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.178 kcal (2) G-P(sol) polarization free energy of solvation -26.889 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.289 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.422 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.311 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.867 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds