Wall clock time and date at job start Mon Mar 30 2020 02:38:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53003 * 109.46918 * 2 1 4 4 H 1.09000 * 109.46779 * 303.18360 * 3 2 1 5 5 C 1.50704 * 109.46737 * 183.18620 * 3 2 1 6 6 H 1.08001 * 120.00149 * 239.99722 * 5 3 2 7 7 C 1.37884 * 119.99792 * 60.00526 * 5 3 2 8 8 N 1.31512 * 119.99953 * 359.97438 * 7 5 3 9 9 Si 1.86800 * 119.99567 * 179.97438 * 7 5 3 10 10 H 1.48498 * 109.47283 * 89.99566 * 9 7 5 11 11 H 1.48503 * 109.46789 * 209.99221 * 9 7 5 12 12 H 1.48499 * 109.47190 * 329.99363 * 9 7 5 13 13 N 1.46896 * 109.47281 * 63.19029 * 3 2 1 14 14 C 1.46562 * 111.04335 * 67.61940 * 13 3 2 15 15 C 1.52987 * 108.86195 * 199.43399 * 14 13 3 16 16 C 1.52979 * 109.63434 * 306.13342 * 15 14 13 17 17 H 1.08998 * 115.51260 * 231.86709 * 16 15 14 18 18 C 1.53606 * 115.77435 * 89.00783 * 16 15 14 19 19 C 1.52358 * 59.74847 * 249.47810 * 18 16 15 20 20 H 1.09001 * 115.77124 * 253.07473 * 19 18 16 21 21 C 1.46734 * 110.99861 * 191.12214 * 13 3 2 22 22 H 1.08997 * 109.47042 * 180.02562 * 1 2 3 23 23 H 1.08996 * 109.47048 * 300.00308 * 1 2 3 24 24 H 1.09000 * 109.46353 * 60.00445 * 1 2 3 25 25 H 1.08996 * 109.47048 * 239.99692 * 2 1 3 26 26 H 1.09003 * 109.47046 * 119.99323 * 2 1 3 27 27 H 0.97005 * 119.99894 * 180.02562 * 8 7 5 28 28 H 1.09009 * 109.26868 * 79.74965 * 14 13 3 29 29 H 1.08998 * 109.69758 * 319.38026 * 14 13 3 30 30 H 1.08993 * 109.44724 * 186.08484 * 15 14 13 31 31 H 1.09002 * 109.44569 * 66.17975 * 15 14 13 32 32 H 1.08999 * 117.52485 * 142.06291 * 18 16 15 33 33 H 1.08997 * 117.52189 * 356.89021 * 18 16 15 34 34 H 1.09002 * 109.30493 * 59.85777 * 21 13 3 35 35 H 1.09004 * 109.30153 * 300.47366 * 21 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6308 1.9725 -0.8601 5 6 3.5450 1.4432 -0.0790 6 1 4.1269 1.8961 0.7101 7 6 4.1789 0.8658 -1.1588 8 7 3.4702 0.3141 -2.1195 9 14 6.0443 0.8673 -1.2569 10 1 6.5753 -0.3573 -0.6063 11 1 6.4650 0.8933 -2.6809 12 1 6.5756 2.0672 -0.5618 13 7 1.6143 2.1124 1.2361 14 6 2.2886 1.5393 2.4043 15 6 1.4932 1.8993 3.6606 16 6 1.2874 3.4140 3.7222 17 1 1.5782 3.8895 4.6589 18 6 0.0298 3.9464 3.0191 19 6 1.4111 4.2398 2.4473 20 1 1.7667 5.2630 2.5685 21 6 1.8525 3.5583 1.1594 22 1 -0.3633 -1.0276 0.0005 23 1 -0.3633 0.5139 0.8899 24 1 -0.3632 0.5138 -0.8901 25 1 1.8934 -0.5139 -0.8899 26 1 1.8934 -0.5137 0.8901 27 1 3.9162 -0.0924 -2.8789 28 1 3.2948 1.9523 2.4775 29 1 2.3416 0.4554 2.3029 30 1 2.0414 1.5715 4.5436 31 1 0.5234 1.4024 3.6309 32 1 -0.5034 4.7692 3.4954 33 1 -0.5929 3.2267 2.4876 34 1 1.2907 3.9721 0.3220 35 1 2.9155 3.7404 1.0014 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000699140973.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:38:17 Heat of formation + Delta-G solvation = 18.115473 kcal Electronic energy + Delta-G solvation = -14676.729109 eV Core-core repulsion = 12481.939119 eV Total energy + Delta-G solvation = -2194.789990 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 209.148 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -39.05225 -35.70595 -32.39000 -31.04885 -30.48620 -26.82779 -24.68786 -23.20809 -22.30305 -20.81085 -19.20526 -17.92980 -16.17756 -15.77364 -14.67866 -14.38985 -13.99545 -13.25578 -13.16499 -12.67097 -12.27132 -11.97680 -11.59703 -11.35566 -11.16669 -11.06946 -10.83541 -10.67544 -10.62016 -10.20879 -9.91079 -9.61222 -9.42066 -9.26288 -9.12581 -9.01289 -8.34566 -7.06378 -5.96965 -4.10200 3.27190 3.34566 3.37443 4.20110 4.40787 5.07121 5.17076 5.27075 5.34040 5.48361 5.65550 5.98762 6.04428 6.19523 6.26369 6.35843 6.38527 6.49803 6.56331 6.58565 6.67092 6.70024 6.74334 6.81416 6.95986 7.16844 7.21378 7.41379 7.63503 7.79485 8.04304 8.19341 8.38261 8.52430 9.00733 9.57384 11.02116 Molecular weight = 209.15amu Principal moments of inertia in cm(-1) A = 0.034406 B = 0.011025 C = 0.009561 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 813.627833 B = 2539.159935 C = 2927.911367 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.109 4.109 3 C 0.214 3.786 4 H 0.037 0.963 5 C -0.542 4.542 6 H 0.056 0.944 7 C 0.068 3.932 8 N -0.886 5.886 9 Si 0.886 3.114 10 H -0.281 1.281 11 H -0.286 1.286 12 H -0.276 1.276 13 N -0.531 5.531 14 C 0.065 3.935 15 C -0.085 4.085 16 C -0.148 4.148 17 H 0.090 0.910 18 C -0.173 4.173 19 C -0.140 4.140 20 H 0.090 0.910 21 C 0.091 3.909 22 H 0.024 0.976 23 H 0.048 0.952 24 H 0.038 0.962 25 H 0.091 0.909 26 H 0.032 0.968 27 H 0.261 0.739 28 H 0.031 0.969 29 H 0.073 0.927 30 H 0.055 0.945 31 H 0.064 0.936 32 H 0.078 0.922 33 H 0.100 0.900 34 H 0.065 0.935 35 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.999 3.580 7.751 9.428 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.147 4.147 3 C 0.107 3.893 4 H 0.054 0.946 5 C -0.581 4.581 6 H 0.074 0.926 7 C -0.135 4.135 8 N -0.524 5.524 9 Si 0.714 3.286 10 H -0.207 1.207 11 H -0.212 1.212 12 H -0.201 1.201 13 N -0.255 5.255 14 C -0.064 4.064 15 C -0.123 4.123 16 C -0.166 4.166 17 H 0.108 0.892 18 C -0.210 4.210 19 C -0.159 4.159 20 H 0.108 0.892 21 C -0.038 4.038 22 H 0.043 0.957 23 H 0.067 0.933 24 H 0.057 0.943 25 H 0.109 0.891 26 H 0.051 0.949 27 H 0.071 0.929 28 H 0.049 0.951 29 H 0.091 0.909 30 H 0.074 0.926 31 H 0.082 0.918 32 H 0.097 0.903 33 H 0.119 0.881 34 H 0.083 0.917 35 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -4.496 3.410 7.609 9.473 hybrid contribution 2.005 0.206 -0.212 2.026 sum -2.491 3.617 7.398 8.603 Atomic orbital electron populations 1.21704 0.98905 0.98320 1.00572 1.21589 0.92181 0.99139 1.01837 1.19279 0.92734 0.91091 0.86174 0.94552 1.21778 0.92766 1.37500 1.06093 0.92582 1.24915 0.97851 0.95109 0.95575 1.69878 1.34880 1.37880 1.09777 0.86688 0.86336 0.78360 0.77168 1.20715 1.21229 1.20109 1.62333 1.56892 1.01697 1.04577 1.21799 0.94814 0.99921 0.89854 1.21193 1.00645 0.92601 0.97877 1.22209 1.02920 0.95988 0.95489 0.89227 1.23001 0.90799 1.03086 1.04145 1.22061 1.00093 0.98632 0.95118 0.89170 1.21184 0.99024 0.89645 0.93942 0.95690 0.93315 0.94333 0.89063 0.94897 0.92936 0.95064 0.90857 0.92647 0.91762 0.90330 0.88114 0.91676 0.94114 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.82 9.79 37.16 0.36 -2.45 16 2 C -0.11 -2.58 5.17 -26.73 -0.14 -2.72 16 3 C 0.21 5.24 1.72 -68.86 -0.12 5.12 16 4 H 0.04 1.00 8.04 -51.93 -0.42 0.58 16 5 C -0.54 -14.46 7.19 -34.44 -0.25 -14.71 16 6 H 0.06 1.52 6.04 -52.49 -0.32 1.20 16 7 C 0.07 1.84 5.30 -17.82 -0.09 1.75 16 8 N -0.89 -24.87 11.30 55.43 0.63 -24.24 16 9 Si 0.89 21.17 29.54 -169.99 -5.02 16.15 16 10 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 11 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 12 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 13 N -0.53 -11.18 3.74 -228.94 -0.86 -12.04 16 14 C 0.06 1.29 4.50 -4.01 -0.02 1.27 16 15 C -0.09 -1.39 6.09 -26.75 -0.16 -1.55 16 16 C -0.15 -2.28 6.28 -90.62 -0.57 -2.85 16 17 H 0.09 1.23 8.14 -51.93 -0.42 0.81 16 18 C -0.17 -2.60 9.76 -26.74 -0.26 -2.86 16 19 C -0.14 -2.31 6.08 -91.64 -0.56 -2.86 16 20 H 0.09 1.34 8.14 -51.93 -0.42 0.91 16 21 C 0.09 1.79 5.22 -4.30 -0.02 1.77 16 22 H 0.02 0.46 8.14 -51.93 -0.42 0.03 16 23 H 0.05 0.96 7.70 -51.93 -0.40 0.56 16 24 H 0.04 0.79 8.14 -51.93 -0.42 0.37 16 25 H 0.09 2.42 5.99 -51.93 -0.31 2.11 16 26 H 0.03 0.77 6.22 -51.93 -0.32 0.44 16 27 H 0.26 7.02 8.31 -40.82 -0.34 6.68 16 28 H 0.03 0.67 6.76 -51.92 -0.35 0.32 16 29 H 0.07 1.53 5.95 -51.93 -0.31 1.22 16 30 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 31 H 0.06 1.04 8.06 -51.93 -0.42 0.62 16 32 H 0.08 1.02 8.14 -51.93 -0.42 0.59 16 33 H 0.10 1.64 8.14 -51.93 -0.42 1.22 16 34 H 0.06 1.29 8.11 -51.93 -0.42 0.87 16 35 H 0.04 0.88 7.18 -51.93 -0.37 0.51 16 LS Contribution 268.34 15.07 4.04 4.04 Total: -1.00 -26.88 268.34 -8.77 -35.65 By element: Atomic # 1 Polarization: 6.28 SS G_CDS: -5.73 Total: 0.55 kcal Atomic # 6 Polarization: -18.28 SS G_CDS: -1.83 Total: -20.11 kcal Atomic # 7 Polarization: -36.05 SS G_CDS: -0.23 Total: -36.28 kcal Atomic # 14 Polarization: 21.17 SS G_CDS: -5.02 Total: 16.15 kcal Total LS contribution 4.04 Total: 4.04 kcal Total: -26.88 -8.77 -35.65 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000699140973.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.765 kcal (2) G-P(sol) polarization free energy of solvation -26.881 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.884 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.768 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.649 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.115 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds