Wall clock time and date at job start Mon Mar 30 2020 02:38:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53003 * 109.46918 * 2 1 4 4 H 1.09000 * 109.46779 * 303.18360 * 3 2 1 5 5 C 1.50704 * 109.46737 * 183.18620 * 3 2 1 6 6 H 1.08001 * 120.00149 * 239.99722 * 5 3 2 7 7 C 1.37884 * 119.99792 * 60.00526 * 5 3 2 8 8 N 1.31512 * 119.99953 * 359.97438 * 7 5 3 9 9 Si 1.86800 * 119.99567 * 179.97438 * 7 5 3 10 10 H 1.48498 * 109.47283 * 89.99566 * 9 7 5 11 11 H 1.48503 * 109.46789 * 209.99221 * 9 7 5 12 12 H 1.48499 * 109.47190 * 329.99363 * 9 7 5 13 13 N 1.46896 * 109.47281 * 63.19029 * 3 2 1 14 14 C 1.46562 * 111.04335 * 67.61940 * 13 3 2 15 15 C 1.52987 * 108.86195 * 199.43399 * 14 13 3 16 16 C 1.52979 * 109.63434 * 306.13342 * 15 14 13 17 17 H 1.08998 * 115.51260 * 231.86709 * 16 15 14 18 18 C 1.53606 * 115.77435 * 89.00783 * 16 15 14 19 19 C 1.52358 * 59.74847 * 249.47810 * 18 16 15 20 20 H 1.09001 * 115.77124 * 253.07473 * 19 18 16 21 21 C 1.46734 * 110.99861 * 191.12214 * 13 3 2 22 22 H 1.08997 * 109.47042 * 180.02562 * 1 2 3 23 23 H 1.08996 * 109.47048 * 300.00308 * 1 2 3 24 24 H 1.09000 * 109.46353 * 60.00445 * 1 2 3 25 25 H 1.08996 * 109.47048 * 239.99692 * 2 1 3 26 26 H 1.09003 * 109.47046 * 119.99323 * 2 1 3 27 27 H 0.97005 * 119.99894 * 180.02562 * 8 7 5 28 28 H 1.09009 * 109.26868 * 79.74965 * 14 13 3 29 29 H 1.08998 * 109.69758 * 319.38026 * 14 13 3 30 30 H 1.08993 * 109.44724 * 186.08484 * 15 14 13 31 31 H 1.09002 * 109.44569 * 66.17975 * 15 14 13 32 32 H 1.08999 * 117.52485 * 142.06291 * 18 16 15 33 33 H 1.08997 * 117.52189 * 356.89021 * 18 16 15 34 34 H 1.09002 * 109.30493 * 59.85777 * 21 13 3 35 35 H 1.09004 * 109.30153 * 300.47366 * 21 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6308 1.9725 -0.8601 5 6 3.5450 1.4432 -0.0790 6 1 4.1269 1.8961 0.7101 7 6 4.1789 0.8658 -1.1588 8 7 3.4702 0.3141 -2.1195 9 14 6.0443 0.8673 -1.2569 10 1 6.5753 -0.3573 -0.6063 11 1 6.4650 0.8933 -2.6809 12 1 6.5756 2.0672 -0.5618 13 7 1.6143 2.1124 1.2361 14 6 2.2886 1.5393 2.4043 15 6 1.4932 1.8993 3.6606 16 6 1.2874 3.4140 3.7222 17 1 1.5782 3.8895 4.6589 18 6 0.0298 3.9464 3.0191 19 6 1.4111 4.2398 2.4473 20 1 1.7667 5.2630 2.5685 21 6 1.8525 3.5583 1.1594 22 1 -0.3633 -1.0276 0.0005 23 1 -0.3633 0.5139 0.8899 24 1 -0.3632 0.5138 -0.8901 25 1 1.8934 -0.5139 -0.8899 26 1 1.8934 -0.5137 0.8901 27 1 3.9162 -0.0924 -2.8789 28 1 3.2948 1.9523 2.4775 29 1 2.3416 0.4554 2.3029 30 1 2.0414 1.5715 4.5436 31 1 0.5234 1.4024 3.6309 32 1 -0.5034 4.7692 3.4954 33 1 -0.5929 3.2267 2.4876 34 1 1.2907 3.9721 0.3220 35 1 2.9155 3.7404 1.0014 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000699140973.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:38:17 Heat of formation + Delta-G solvation = 3.565992 kcal Electronic energy + Delta-G solvation = -14677.360022 eV Core-core repulsion = 12481.939119 eV Total energy + Delta-G solvation = -2195.420903 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 209.148 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.55067 -37.38346 -34.32185 -32.85579 -31.96063 -28.72295 -26.39997 -24.84188 -24.01584 -22.07243 -21.06246 -19.51716 -18.02926 -17.44112 -16.44620 -16.04416 -15.57641 -14.96283 -14.80855 -14.38093 -13.91897 -13.60933 -13.19986 -13.10191 -12.89197 -12.73276 -12.56267 -12.41002 -12.19663 -11.95118 -11.67396 -11.51654 -11.03351 -10.93989 -10.67343 -10.46877 -10.42456 -8.89270 -8.03415 -6.26355 1.35372 1.37230 1.45887 2.38953 2.94325 3.14223 3.45443 3.87599 4.06567 4.19032 4.34950 4.57135 4.60977 4.65379 4.74364 4.79194 4.90712 4.94761 5.02946 5.09017 5.11459 5.14842 5.29061 5.32447 5.41510 5.44371 5.53206 5.55446 5.63539 5.80228 6.09028 6.21593 6.41940 6.71146 6.95991 7.44605 8.91198 Molecular weight = 209.15amu Principal moments of inertia in cm(-1) A = 0.034406 B = 0.011025 C = 0.009561 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 813.627833 B = 2539.159935 C = 2927.911367 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.103 4.103 3 C 0.219 3.781 4 H 0.000 1.000 5 C -0.552 4.552 6 H 0.047 0.953 7 C 0.021 3.979 8 N -0.910 5.910 9 Si 0.946 3.054 10 H -0.275 1.275 11 H -0.283 1.283 12 H -0.275 1.275 13 N -0.524 5.524 14 C 0.067 3.933 15 C -0.079 4.079 16 C -0.145 4.145 17 H 0.117 0.883 18 C -0.157 4.157 19 C -0.156 4.156 20 H 0.110 0.890 21 C 0.091 3.909 22 H 0.046 0.954 23 H 0.057 0.943 24 H 0.031 0.969 25 H 0.061 0.939 26 H 0.031 0.969 27 H 0.262 0.738 28 H 0.011 0.989 29 H 0.059 0.941 30 H 0.079 0.921 31 H 0.068 0.932 32 H 0.108 0.892 33 H 0.086 0.914 34 H 0.055 0.945 35 H 0.014 0.986 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.416 4.106 9.637 11.368 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.142 4.142 3 C 0.111 3.889 4 H 0.018 0.982 5 C -0.591 4.591 6 H 0.065 0.935 7 C -0.179 4.179 8 N -0.550 5.550 9 Si 0.772 3.228 10 H -0.201 1.201 11 H -0.208 1.208 12 H -0.200 1.200 13 N -0.248 5.248 14 C -0.062 4.062 15 C -0.117 4.117 16 C -0.164 4.164 17 H 0.135 0.865 18 C -0.194 4.194 19 C -0.174 4.174 20 H 0.128 0.872 21 C -0.037 4.037 22 H 0.065 0.935 23 H 0.076 0.924 24 H 0.050 0.950 25 H 0.080 0.920 26 H 0.050 0.950 27 H 0.071 0.929 28 H 0.029 0.971 29 H 0.077 0.923 30 H 0.097 0.903 31 H 0.087 0.913 32 H 0.126 0.874 33 H 0.104 0.896 34 H 0.074 0.926 35 H 0.032 0.968 Dipole moment (debyes) X Y Z Total from point charges -4.918 3.941 9.510 11.409 hybrid contribution 2.132 0.051 -0.816 2.283 sum -2.786 3.992 8.693 9.964 Atomic orbital electron populations 1.21559 0.96244 0.99770 1.00656 1.21422 0.94508 0.98010 1.00234 1.19063 0.91548 0.91579 0.86673 0.98175 1.21988 0.94033 1.37179 1.05867 0.93483 1.25614 1.01898 0.94966 0.95388 1.70001 1.36347 1.38445 1.10162 0.85749 0.81500 0.78348 0.77188 1.20119 1.20805 1.19999 1.62323 1.56492 1.02353 1.03602 1.21813 0.94514 0.98817 0.91040 1.21155 1.00426 0.93719 0.96422 1.22339 1.03009 0.95116 0.95887 0.86462 1.23023 0.89977 1.03348 1.03048 1.21982 1.02145 0.99478 0.93791 0.87189 1.21159 0.97369 0.89053 0.96163 0.93541 0.92391 0.94968 0.92030 0.94992 0.92918 0.97080 0.92299 0.90290 0.91316 0.87393 0.89585 0.92648 0.96816 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.05 9.79 71.98 0.70 -4.34 16 2 C -0.10 -4.98 5.17 30.60 0.16 -4.82 16 3 C 0.22 11.08 1.72 44.17 0.08 11.16 16 4 H 0.00 0.02 8.04 -2.39 -0.02 0.00 16 5 C -0.55 -30.28 7.19 25.60 0.18 -30.10 16 6 H 0.05 2.62 6.04 -2.91 -0.02 2.60 16 7 C 0.02 1.18 5.30 84.66 0.45 1.63 16 8 N -0.91 -52.38 11.30 21.45 0.24 -52.14 16 9 Si 0.95 44.05 29.54 68.60 2.03 46.08 16 10 H -0.28 -12.53 7.11 99.48 0.71 -11.82 16 11 H -0.28 -12.91 7.11 99.48 0.71 -12.20 16 12 H -0.28 -12.66 7.11 99.48 0.71 -11.95 16 13 N -0.52 -22.28 3.74 -878.24 -3.29 -25.57 16 14 C 0.07 2.62 4.50 86.36 0.39 3.01 16 15 C -0.08 -2.39 6.09 30.58 0.19 -2.20 16 16 C -0.15 -3.99 6.28 -10.79 -0.07 -4.06 16 17 H 0.12 2.66 8.14 -2.39 -0.02 2.64 16 18 C -0.16 -4.19 9.76 30.59 0.30 -3.89 16 19 C -0.16 -4.79 6.08 -11.45 -0.07 -4.86 16 20 H 0.11 2.97 8.14 -2.39 -0.02 2.95 16 21 C 0.09 3.64 5.22 86.09 0.45 4.09 16 22 H 0.05 1.66 8.14 -2.39 -0.02 1.64 16 23 H 0.06 2.21 7.70 -2.39 -0.02 2.20 16 24 H 0.03 1.31 8.14 -2.39 -0.02 1.29 16 25 H 0.06 3.35 5.99 -2.39 -0.01 3.34 16 26 H 0.03 1.51 6.22 -2.39 -0.01 1.49 16 27 H 0.26 14.35 8.31 -92.70 -0.77 13.58 16 28 H 0.01 0.47 6.76 -2.38 -0.02 0.45 16 29 H 0.06 2.46 5.95 -2.39 -0.01 2.45 16 30 H 0.08 2.03 8.14 -2.39 -0.02 2.01 16 31 H 0.07 2.03 8.06 -2.39 -0.02 2.01 16 32 H 0.11 2.29 8.14 -2.39 -0.02 2.27 16 33 H 0.09 2.58 8.14 -2.39 -0.02 2.56 16 34 H 0.06 2.26 8.11 -2.39 -0.02 2.24 16 35 H 0.01 0.61 7.18 -2.39 -0.02 0.59 16 Total: -1.00 -58.47 268.34 2.78 -55.69 By element: Atomic # 1 Polarization: 9.29 SS G_CDS: 1.04 Total: 10.33 kcal Atomic # 6 Polarization: -37.14 SS G_CDS: 2.76 Total: -34.39 kcal Atomic # 7 Polarization: -74.67 SS G_CDS: -3.05 Total: -77.71 kcal Atomic # 14 Polarization: 44.05 SS G_CDS: 2.03 Total: 46.08 kcal Total: -58.47 2.78 -55.69 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000699140973.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.256 kcal (2) G-P(sol) polarization free energy of solvation -58.470 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.786 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.780 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.690 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.566 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds