Wall clock time and date at job start Mon Mar 30 2020 03:04:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30564 * 1 3 3 Si 1.86794 * 120.00610 * 2 1 4 4 H 1.48501 * 109.46947 * 90.00112 * 3 2 1 5 5 H 1.48499 * 109.47464 * 210.00139 * 3 2 1 6 6 H 1.48503 * 109.47229 * 330.00666 * 3 2 1 7 7 C 1.40393 * 119.99543 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00373 * 17.27959 * 7 2 1 9 9 C 1.40661 * 120.00101 * 197.27162 * 7 2 1 10 10 C 1.40872 * 120.60116 * 28.74793 * 9 7 2 11 11 C 1.37429 * 119.87921 * 179.76405 * 10 9 7 12 12 C 1.38884 * 121.21689 * 0.52342 * 11 10 9 13 13 Cl 1.73599 * 119.36307 * 179.75587 * 12 11 10 14 14 C 1.38189 * 121.27345 * 359.73426 * 12 11 10 15 15 C 1.39642 * 120.00320 * 359.97438 * 14 12 11 16 16 C 1.46605 * 120.58510 * 179.97438 * 15 14 12 17 17 O 1.21338 * 119.99666 * 0.02562 * 16 15 14 18 18 H 0.96996 * 120.00387 * 175.43487 * 1 2 3 19 19 H 1.07993 * 120.05860 * 0.02562 * 10 9 7 20 20 H 1.07999 * 119.39117 * 180.25487 * 11 10 9 21 21 H 1.08000 * 119.99968 * 180.02562 * 14 12 11 22 22 H 1.08002 * 120.00083 * 180.02562 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3056 0.0000 0.0000 3 14 2.2398 1.6176 0.0000 4 1 2.4873 2.0462 1.4001 5 1 3.5373 1.4400 -0.7000 6 1 1.4373 2.6527 -0.6999 7 6 2.0075 -1.2159 -0.0005 8 1 1.5041 -2.1300 -0.2788 9 6 3.3665 -1.2437 0.3611 10 6 3.8888 -0.2936 1.2606 11 6 5.2179 -0.3375 1.6075 12 6 6.0685 -1.2994 1.0784 13 17 7.7406 -1.3065 1.5451 14 6 5.6094 -2.2514 0.1881 15 6 4.2668 -2.2587 -0.1956 16 6 3.7663 -3.2624 -1.1397 17 8 4.5207 -4.0968 -1.5946 18 1 -0.4850 -0.8373 -0.0669 19 1 3.2450 0.4652 1.6801 20 1 5.6090 0.3923 2.3010 21 1 6.2889 -2.9903 -0.2103 22 1 2.7261 -3.2591 -1.4304 RHF calculation, no. of doubly occupied orbitals= 34 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000034596711.mol2 22 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:04:11 Heat of formation + Delta-G solvation = -42.083550 kcal Electronic energy + Delta-G solvation = -11180.627222 eV Core-core repulsion = 8918.718025 eV Total energy + Delta-G solvation = -2261.909197 eV No. of doubly occupied orbitals = 34 Molecular weight (most abundant/longest-lived isotopes) = 210.019 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -38.51822 -37.02879 -35.59128 -34.08670 -30.55495 -30.25999 -25.45168 -23.66199 -21.30185 -19.71956 -18.57534 -16.46128 -15.38607 -14.72622 -14.46289 -13.73311 -13.43036 -13.20037 -13.02036 -12.66293 -12.23730 -11.39017 -11.13764 -10.92349 -10.46601 -10.19050 -10.17489 -9.93054 -9.37914 -8.72671 -8.12943 -8.03852 -7.63330 -5.05449 1.62542 2.30452 2.95354 3.10233 3.13971 3.27350 3.45064 3.68329 4.16609 4.99780 5.40379 5.69685 5.79511 6.19003 6.37382 6.47927 6.85117 6.95430 7.00659 7.12544 7.30393 7.43693 7.85863 7.97224 8.18362 8.49653 9.48927 Molecular weight = 210.02amu Principal moments of inertia in cm(-1) A = 0.030016 B = 0.012946 C = 0.009515 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 932.606943 B = 2162.350178 C = 2942.142531 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.776 5.776 2 C 0.041 3.959 3 Si 1.071 2.929 4 H -0.270 1.270 5 H -0.257 1.257 6 H -0.283 1.283 7 C -0.474 4.474 8 H 0.091 0.909 9 C 0.128 3.872 10 C -0.243 4.243 11 C -0.033 4.033 12 C -0.176 4.176 13 Cl -0.122 7.122 14 C 0.009 3.991 15 C -0.307 4.307 16 C 0.393 3.607 17 O -0.518 6.518 18 H 0.295 0.705 19 H 0.119 0.881 20 H 0.109 0.891 21 H 0.116 0.884 22 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.561 2.274 1.607 4.521 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.395 5.395 2 C -0.183 4.183 3 Si 0.895 3.105 4 H -0.197 1.197 5 H -0.181 1.181 6 H -0.210 1.210 7 C -0.500 4.500 8 H 0.109 0.891 9 C 0.124 3.876 10 C -0.262 4.262 11 C -0.052 4.052 12 C -0.203 4.203 13 Cl -0.094 7.094 14 C -0.010 4.010 15 C -0.310 4.310 16 C 0.260 3.740 17 O -0.400 6.400 18 H 0.107 0.893 19 H 0.137 0.863 20 H 0.127 0.873 21 H 0.134 0.866 22 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 3.736 3.424 1.451 5.271 hybrid contribution 0.072 -1.663 0.207 1.677 sum 3.808 1.761 1.658 4.511 Atomic orbital electron populations 1.70431 1.08243 1.34014 1.26851 1.27658 0.95564 1.04987 0.90126 0.83611 0.75909 0.72441 0.78495 1.19658 1.18065 1.20980 1.20952 0.94705 0.97273 1.37090 0.89138 1.18807 0.92149 0.89134 0.87522 1.21117 0.95078 1.04876 1.05084 1.20568 0.92882 0.95239 0.96505 1.19994 0.83770 1.05578 1.10913 1.98245 1.20029 1.98717 1.92367 1.20823 0.94662 0.93946 0.91564 1.21278 0.93274 1.06762 1.09679 1.23412 0.92898 0.80122 0.77556 1.90405 1.61532 1.36852 1.51164 0.89299 0.86343 0.87288 0.86624 0.89757 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -17.92 13.64 55.57 0.76 -17.16 14 2 C 0.04 0.94 5.43 -17.28 -0.09 0.84 14 3 Si 1.07 21.11 24.90 -169.99 -4.23 16.88 14 4 H -0.27 -5.00 6.45 56.52 0.36 -4.63 14 5 H -0.26 -5.11 7.01 56.52 0.40 -4.71 14 6 H -0.28 -5.45 7.11 56.52 0.40 -5.05 14 7 C -0.47 -10.91 8.83 -37.86 -0.33 -11.25 14 8 H 0.09 2.07 6.97 -52.49 -0.37 1.71 14 9 C 0.13 2.93 5.31 -104.59 -0.56 2.37 14 10 C -0.24 -5.23 7.27 -38.88 -0.28 -5.51 14 11 C -0.03 -0.66 9.72 -39.64 -0.39 -1.05 14 12 C -0.18 -3.63 6.32 -39.36 -0.25 -3.88 14 13 Cl -0.12 -2.20 28.91 -51.86 -1.50 -3.70 14 14 C 0.01 0.20 9.35 -39.08 -0.37 -0.17 14 15 C -0.31 -6.94 6.06 -102.60 -0.62 -7.56 14 16 C 0.39 8.51 11.04 34.11 0.38 8.88 14 17 O -0.52 -12.17 17.19 5.51 0.09 -12.07 14 18 H 0.29 6.53 8.72 -40.82 -0.36 6.18 14 19 H 0.12 2.44 4.39 -52.49 -0.23 2.21 14 20 H 0.11 1.92 8.06 -52.49 -0.42 1.49 14 21 H 0.12 2.46 7.66 -52.49 -0.40 2.06 14 22 H 0.09 1.67 6.75 -52.49 -0.35 1.32 14 LS Contribution 217.11 15.07 3.27 3.27 Total: -1.00 -24.45 217.11 -5.09 -29.53 By element: Atomic # 1 Polarization: 1.54 SS G_CDS: -0.97 Total: 0.57 kcal Atomic # 6 Polarization: -14.81 SS G_CDS: -2.51 Total: -17.32 kcal Atomic # 7 Polarization: -17.92 SS G_CDS: 0.76 Total: -17.16 kcal Atomic # 8 Polarization: -12.17 SS G_CDS: 0.09 Total: -12.07 kcal Atomic # 14 Polarization: 21.11 SS G_CDS: -4.23 Total: 16.88 kcal Atomic # 17 Polarization: -2.20 SS G_CDS: -1.50 Total: -3.70 kcal Total LS contribution 3.27 Total: 3.27 kcal Total: -24.45 -5.09 -29.53 kcal The number of atoms in the molecule is 22 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000034596711.mol2 22 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.549 kcal (2) G-P(sol) polarization free energy of solvation -24.446 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.995 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.089 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -29.535 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.084 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds