Wall clock time and date at job start Mon Mar 30 2020 03:04:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30564 * 1 3 3 Si 1.86794 * 120.00610 * 2 1 4 4 H 1.48501 * 109.46947 * 90.00112 * 3 2 1 5 5 H 1.48499 * 109.47464 * 210.00139 * 3 2 1 6 6 H 1.48503 * 109.47229 * 330.00666 * 3 2 1 7 7 C 1.40393 * 119.99543 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00373 * 17.27959 * 7 2 1 9 9 C 1.40661 * 120.00101 * 197.27162 * 7 2 1 10 10 C 1.40872 * 120.60116 * 28.74793 * 9 7 2 11 11 C 1.37429 * 119.87921 * 179.76405 * 10 9 7 12 12 C 1.38884 * 121.21689 * 0.52342 * 11 10 9 13 13 Cl 1.73599 * 119.36307 * 179.75587 * 12 11 10 14 14 C 1.38189 * 121.27345 * 359.73426 * 12 11 10 15 15 C 1.39642 * 120.00320 * 359.97438 * 14 12 11 16 16 C 1.46605 * 120.58510 * 179.97438 * 15 14 12 17 17 O 1.21338 * 119.99666 * 0.02562 * 16 15 14 18 18 H 0.96996 * 120.00387 * 175.43487 * 1 2 3 19 19 H 1.07993 * 120.05860 * 0.02562 * 10 9 7 20 20 H 1.07999 * 119.39117 * 180.25487 * 11 10 9 21 21 H 1.08000 * 119.99968 * 180.02562 * 14 12 11 22 22 H 1.08002 * 120.00083 * 180.02562 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3056 0.0000 0.0000 3 14 2.2398 1.6176 0.0000 4 1 2.4873 2.0462 1.4001 5 1 3.5373 1.4400 -0.7000 6 1 1.4373 2.6527 -0.6999 7 6 2.0075 -1.2159 -0.0005 8 1 1.5041 -2.1300 -0.2788 9 6 3.3665 -1.2437 0.3611 10 6 3.8888 -0.2936 1.2606 11 6 5.2179 -0.3375 1.6075 12 6 6.0685 -1.2994 1.0784 13 17 7.7406 -1.3065 1.5451 14 6 5.6094 -2.2514 0.1881 15 6 4.2668 -2.2587 -0.1956 16 6 3.7663 -3.2624 -1.1397 17 8 4.5207 -4.0968 -1.5946 18 1 -0.4850 -0.8373 -0.0669 19 1 3.2450 0.4652 1.6801 20 1 5.6090 0.3923 2.3010 21 1 6.2889 -2.9903 -0.2103 22 1 2.7261 -3.2591 -1.4304 RHF calculation, no. of doubly occupied orbitals= 34 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000034596711.mol2 22 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:04:10 Heat of formation + Delta-G solvation = -54.992647 kcal Electronic energy + Delta-G solvation = -11181.187003 eV Core-core repulsion = 8918.718025 eV Total energy + Delta-G solvation = -2262.468977 eV No. of doubly occupied orbitals = 34 Molecular weight (most abundant/longest-lived isotopes) = 210.019 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -40.24449 -38.75025 -37.16361 -35.77873 -32.25486 -31.94570 -27.16812 -25.35687 -23.00859 -21.41071 -20.28734 -18.12633 -17.09789 -16.40649 -16.09539 -15.38228 -15.15972 -14.92101 -14.71939 -14.30054 -13.86415 -13.02829 -12.74712 -12.51760 -12.07026 -11.80695 -11.73480 -11.56661 -10.98947 -10.46569 -9.81679 -9.75110 -9.35035 -6.81045 -0.08407 0.60863 1.38938 1.53098 1.55047 1.66907 1.83361 2.10473 2.47141 3.27536 3.73742 4.02282 4.23144 4.50622 4.69005 4.81195 5.16586 5.25358 5.27994 5.43033 5.61308 5.74305 6.11737 6.25705 6.46130 6.76548 7.75783 Molecular weight = 210.02amu Principal moments of inertia in cm(-1) A = 0.030016 B = 0.012946 C = 0.009515 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 932.606943 B = 2162.350178 C = 2942.142531 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.795 5.795 2 C 0.021 3.979 3 Si 1.092 2.908 4 H -0.246 1.246 5 H -0.261 1.261 6 H -0.278 1.278 7 C -0.493 4.493 8 H 0.080 0.920 9 C 0.119 3.881 10 C -0.251 4.251 11 C -0.029 4.029 12 C -0.175 4.175 13 Cl -0.096 7.096 14 C -0.002 4.002 15 C -0.326 4.326 16 C 0.397 3.603 17 O -0.539 6.539 18 H 0.292 0.708 19 H 0.130 0.870 20 H 0.141 0.859 21 H 0.116 0.884 22 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.607 3.322 2.401 6.167 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.415 5.415 2 C -0.201 4.201 3 Si 0.912 3.088 4 H -0.171 1.171 5 H -0.185 1.185 6 H -0.204 1.204 7 C -0.519 4.519 8 H 0.098 0.902 9 C 0.115 3.885 10 C -0.270 4.270 11 C -0.048 4.048 12 C -0.202 4.202 13 Cl -0.068 7.068 14 C -0.021 4.021 15 C -0.329 4.329 16 C 0.265 3.735 17 O -0.422 6.422 18 H 0.104 0.896 19 H 0.147 0.853 20 H 0.159 0.841 21 H 0.134 0.866 22 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 4.775 4.463 2.257 6.914 hybrid contribution -0.137 -2.037 -0.010 2.042 sum 4.638 2.426 2.247 5.696 Atomic orbital electron populations 1.70473 1.08675 1.33956 1.28387 1.28457 0.95617 1.06711 0.89282 0.83366 0.75020 0.70532 0.79841 1.17146 1.18500 1.20409 1.20974 0.95130 0.97338 1.38504 0.90217 1.18977 0.92085 0.89676 0.87809 1.21320 0.95956 1.04846 1.04830 1.20902 0.92284 0.95343 0.96286 1.20188 0.85286 1.04829 1.09852 1.98255 1.17855 1.98639 1.92049 1.20943 0.94475 0.94539 0.92170 1.21481 0.93869 1.07217 1.10298 1.23631 0.93451 0.79445 0.76939 1.90390 1.62185 1.37651 1.51989 0.89588 0.85268 0.84108 0.86602 0.87961 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -36.53 13.64 21.90 0.30 -36.23 14 2 C 0.02 0.91 5.43 85.41 0.46 1.38 14 3 Si 1.09 40.58 24.90 68.60 1.71 42.29 14 4 H -0.25 -8.20 6.45 99.48 0.64 -7.55 14 5 H -0.26 -9.81 7.01 99.48 0.70 -9.11 14 6 H -0.28 -10.03 7.11 99.48 0.71 -9.32 14 7 C -0.49 -22.60 8.83 23.39 0.21 -22.39 14 8 H 0.08 3.71 6.97 -2.91 -0.02 3.69 14 9 C 0.12 5.30 5.31 -19.84 -0.11 5.19 14 10 C -0.25 -10.22 7.27 22.72 0.17 -10.05 14 11 C -0.03 -1.09 9.72 22.23 0.22 -0.88 14 12 C -0.17 -6.77 6.32 22.41 0.14 -6.63 14 13 Cl -0.10 -3.19 28.91 -2.72 -0.08 -3.27 14 14 C 0.00 -0.09 9.35 22.60 0.21 0.12 14 15 C -0.33 -14.49 6.06 -18.56 -0.11 -14.60 14 16 C 0.40 17.08 11.04 70.00 0.77 17.85 14 17 O -0.54 -25.20 17.19 -3.21 -0.06 -25.25 14 18 H 0.29 13.09 8.72 -92.71 -0.81 12.28 14 19 H 0.13 4.94 4.39 -2.91 -0.01 4.93 14 20 H 0.14 4.32 8.06 -2.91 -0.02 4.30 14 21 H 0.12 4.82 7.66 -2.91 -0.02 4.80 14 22 H 0.10 4.04 6.75 -2.91 -0.02 4.02 14 Total: -1.00 -49.42 217.11 4.97 -44.45 By element: Atomic # 1 Polarization: 6.88 SS G_CDS: 1.14 Total: 8.02 kcal Atomic # 6 Polarization: -31.97 SS G_CDS: 1.96 Total: -30.01 kcal Atomic # 7 Polarization: -36.53 SS G_CDS: 0.30 Total: -36.23 kcal Atomic # 8 Polarization: -25.20 SS G_CDS: -0.06 Total: -25.25 kcal Atomic # 14 Polarization: 40.58 SS G_CDS: 1.71 Total: 42.29 kcal Atomic # 17 Polarization: -3.19 SS G_CDS: -0.08 Total: -3.27 kcal Total: -49.42 4.97 -44.45 kcal The number of atoms in the molecule is 22 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000034596711.mol2 22 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.543 kcal (2) G-P(sol) polarization free energy of solvation -49.421 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.964 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.972 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.449 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.993 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds