Wall clock time and date at job start Mon Mar 30 2020 02:33:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08999 * 109.46976 * 2 1 4 4 C 1.50701 * 109.47153 * 240.00682 * 2 1 3 5 5 H 1.08004 * 119.99456 * 240.00085 * 4 2 1 6 6 C 1.37867 * 120.00306 * 59.99840 * 4 2 1 7 7 N 1.31509 * 120.00059 * 359.97438 * 6 4 2 8 8 Si 1.86804 * 120.00052 * 179.97438 * 6 4 2 9 9 H 1.48502 * 109.47065 * 60.00009 * 8 6 4 10 10 H 1.48496 * 109.47317 * 179.97438 * 8 6 4 11 11 H 1.48497 * 109.46994 * 300.00181 * 8 6 4 12 12 N 1.46895 * 109.47131 * 120.00074 * 2 1 3 13 13 C 1.46904 * 111.00406 * 266.97297 * 12 2 1 14 14 C 1.52998 * 109.46893 * 266.42566 * 13 12 2 15 15 C 1.53000 * 117.50226 * 356.78095 * 14 13 12 16 16 C 1.53006 * 117.49905 * 65.43902 * 14 13 12 17 17 C 1.52998 * 109.47332 * 146.42500 * 13 12 2 18 18 C 1.53001 * 117.49666 * 12.70762 * 17 13 12 19 19 C 1.52992 * 117.49929 * 304.04567 * 17 13 12 20 20 H 1.09002 * 109.47087 * 64.77550 * 1 2 3 21 21 H 1.09003 * 109.46967 * 184.77415 * 1 2 3 22 22 H 1.08994 * 109.47596 * 304.77258 * 1 2 3 23 23 H 0.97009 * 120.00344 * 180.02562 * 7 6 4 24 24 H 1.00902 * 110.99950 * 30.92469 * 12 2 1 25 25 H 1.09001 * 109.46597 * 26.42454 * 13 12 2 26 26 H 1.08998 * 115.55298 * 211.10500 * 14 13 12 27 27 H 1.08996 * 117.50156 * 215.00410 * 15 14 13 28 28 H 1.09012 * 117.49662 * 0.02562 * 15 14 13 29 29 H 1.09002 * 117.49668 * 359.97436 * 16 14 13 30 30 H 1.08994 * 117.50195 * 144.97283 * 16 14 13 31 31 H 1.08995 * 115.54651 * 158.37713 * 17 13 12 32 32 H 1.08994 * 117.50170 * 0.02562 * 18 17 13 33 33 H 1.09007 * 117.49575 * 145.02362 * 18 17 13 34 34 H 1.09004 * 117.50253 * 214.97977 * 19 17 13 35 35 H 1.09003 * 117.49949 * 359.97438 * 19 17 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7103 -1.2305 5 1 2.6533 -1.5884 -1.1315 6 6 1.6993 -0.2392 -2.4827 7 7 0.9428 0.8298 -2.6033 8 14 2.3226 -1.1192 -4.0080 9 1 1.8282 -2.5195 -4.0083 10 1 1.8271 -0.4196 -5.2205 11 1 3.8076 -1.1186 -4.0077 12 7 2.0197 -0.6925 1.1994 13 6 2.2635 0.2574 2.2932 14 6 3.7300 0.6932 2.2728 15 6 4.6456 0.0437 1.2332 16 6 4.2100 1.5015 1.0657 17 6 1.9496 -0.4143 3.6315 18 6 1.7582 -1.9323 3.6323 19 6 0.5514 -1.0082 3.8131 20 1 -0.3633 0.4380 -0.9297 21 1 -0.3633 -1.0241 0.0855 22 1 -0.3634 0.5860 0.8441 23 1 0.7082 1.1611 -3.4844 24 1 1.3783 -1.4169 1.4858 25 1 1.6232 1.1303 2.1657 26 1 4.1624 0.9340 3.2439 27 1 5.6804 -0.1428 1.5204 28 1 4.2031 -0.6938 0.5634 29 1 3.4811 1.7225 0.2859 30 1 4.9579 2.2744 1.2427 31 1 2.4235 0.0337 4.5048 32 1 1.8563 -2.4525 2.6795 33 1 2.1058 -2.4830 4.5065 34 1 0.1054 -0.9513 4.8061 35 1 -0.1451 -0.9200 2.9793 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000049234959.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:33:47 Heat of formation + Delta-G solvation = 54.724840 kcal Electronic energy + Delta-G solvation = -14482.869005 eV Core-core repulsion = 12289.666516 eV Total energy + Delta-G solvation = -2193.202489 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 209.148 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -38.80268 -35.81788 -34.42964 -31.84182 -28.65125 -25.73746 -25.02059 -22.13709 -21.54327 -20.59923 -20.34059 -18.79560 -16.45177 -15.66025 -15.01649 -14.56118 -14.15480 -13.57495 -13.14315 -12.77223 -12.30243 -11.86962 -11.21285 -11.17391 -10.91520 -10.88230 -10.77231 -10.57318 -10.46081 -10.14979 -9.97033 -9.81235 -9.76991 -9.27709 -9.14267 -8.87565 -8.29551 -7.16389 -5.94305 -3.97211 3.36608 3.40600 3.44001 4.10407 4.46942 4.63990 5.00934 5.22759 5.25917 5.36841 5.46066 5.62869 5.68768 5.85774 5.90080 5.92131 6.14911 6.38469 6.42203 6.43464 6.45801 6.58351 6.68228 6.72329 6.85398 7.01139 7.15439 7.39133 7.47994 7.78058 7.94831 8.35092 8.61414 8.66145 9.09597 9.67946 11.12119 Molecular weight = 209.15amu Principal moments of inertia in cm(-1) A = 0.032894 B = 0.010412 C = 0.009180 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 851.027658 B = 2688.496429 C = 3049.503257 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.208 3.792 3 H 0.038 0.962 4 C -0.489 4.489 5 H 0.061 0.939 6 C 0.055 3.945 7 N -0.898 5.898 8 Si 0.894 3.106 9 H -0.279 1.279 10 H -0.290 1.290 11 H -0.277 1.277 12 N -0.678 5.678 13 C 0.144 3.856 14 C -0.146 4.146 15 C -0.155 4.155 16 C -0.187 4.187 17 C -0.148 4.148 18 C -0.176 4.176 19 C -0.192 4.192 20 H 0.091 0.909 21 H 0.024 0.976 22 H 0.004 0.996 23 H 0.259 0.741 24 H 0.326 0.674 25 H 0.045 0.955 26 H 0.087 0.913 27 H 0.068 0.932 28 H 0.127 0.873 29 H 0.105 0.895 30 H 0.074 0.926 31 H 0.099 0.901 32 H 0.110 0.890 33 H 0.086 0.914 34 H 0.088 0.912 35 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.913 -1.479 9.757 10.052 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.100 3.900 3 H 0.056 0.944 4 C -0.527 4.527 5 H 0.079 0.921 6 C -0.145 4.145 7 N -0.538 5.538 8 Si 0.723 3.277 9 H -0.205 1.205 10 H -0.216 1.216 11 H -0.203 1.203 12 N -0.311 5.311 13 C 0.034 3.966 14 C -0.165 4.165 15 C -0.192 4.192 16 C -0.224 4.224 17 C -0.167 4.167 18 C -0.213 4.213 19 C -0.229 4.229 20 H 0.109 0.891 21 H 0.044 0.956 22 H 0.023 0.977 23 H 0.069 0.931 24 H 0.147 0.853 25 H 0.063 0.937 26 H 0.105 0.895 27 H 0.086 0.914 28 H 0.145 0.855 29 H 0.123 0.877 30 H 0.092 0.908 31 H 0.117 0.883 32 H 0.128 0.872 33 H 0.104 0.896 34 H 0.106 0.894 35 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 2.480 -1.370 9.393 9.811 hybrid contribution -0.647 -0.102 -0.525 0.840 sum 1.832 -1.472 8.868 9.174 Atomic orbital electron populations 1.22456 1.00902 0.98219 1.01347 1.19343 0.89430 0.94489 0.86711 0.94428 1.21119 1.29877 1.12222 0.89529 0.92081 1.24932 0.95436 0.95218 0.98937 1.69864 1.37376 1.23257 1.23319 0.86624 0.79210 0.79602 0.82307 1.20497 1.21594 1.20310 1.61007 1.52199 1.13327 1.04550 1.20400 0.93711 0.94101 0.88425 1.22207 0.95435 1.05721 0.93166 1.22940 0.96871 0.96755 1.02624 1.23022 1.03780 0.94583 1.00983 1.22548 0.98880 0.96045 0.99215 1.23015 1.01755 0.93130 1.03398 1.23009 0.91658 1.05810 1.02434 0.89077 0.95645 0.97706 0.93112 0.85313 0.93682 0.89492 0.91387 0.85468 0.87708 0.90780 0.88304 0.87194 0.89555 0.89399 0.88842 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.07 9.06 37.16 0.34 -3.73 16 2 C 0.21 5.04 1.98 -68.87 -0.14 4.91 16 3 H 0.04 1.01 5.29 -51.93 -0.27 0.73 16 4 C -0.49 -13.14 8.48 -34.44 -0.29 -13.43 16 5 H 0.06 1.66 7.81 -52.48 -0.41 1.25 16 6 C 0.05 1.51 5.29 -17.83 -0.09 1.41 16 7 N -0.90 -25.47 11.29 55.43 0.63 -24.85 16 8 Si 0.89 21.47 29.54 -169.99 -5.02 16.45 16 9 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 10 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 11 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 12 N -0.68 -13.84 3.99 -100.95 -0.40 -14.24 16 13 C 0.14 2.62 2.69 -67.71 -0.18 2.43 16 14 C -0.15 -2.56 5.74 -90.62 -0.52 -3.08 16 15 C -0.15 -2.88 9.80 -26.69 -0.26 -3.14 16 16 C -0.19 -3.50 9.92 -26.69 -0.26 -3.77 16 17 C -0.15 -2.24 5.67 -90.62 -0.51 -2.75 16 18 C -0.18 -2.49 9.66 -26.69 -0.26 -2.74 16 19 C -0.19 -2.70 9.83 -26.70 -0.26 -2.96 16 20 H 0.09 2.43 5.96 -51.93 -0.31 2.12 16 21 H 0.02 0.57 8.03 -51.93 -0.42 0.16 16 22 H 0.00 0.09 8.14 -51.93 -0.42 -0.34 16 23 H 0.26 7.09 8.31 -40.82 -0.34 6.76 16 24 H 0.33 6.42 4.70 -39.29 -0.18 6.23 16 25 H 0.05 0.90 7.62 -51.93 -0.40 0.51 16 26 H 0.09 1.35 8.00 -51.93 -0.42 0.94 16 27 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 28 H 0.13 2.75 6.46 -51.92 -0.34 2.41 16 29 H 0.10 2.31 5.83 -51.93 -0.30 2.00 16 30 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 31 H 0.10 1.35 8.04 -51.93 -0.42 0.93 16 32 H 0.11 1.71 6.16 -51.93 -0.32 1.39 16 33 H 0.09 1.06 8.14 -51.93 -0.42 0.64 16 34 H 0.09 1.07 8.14 -51.93 -0.42 0.64 16 35 H 0.09 1.45 7.80 -51.93 -0.41 1.04 16 LS Contribution 274.99 15.07 4.14 4.14 Total: -1.00 -26.95 274.99 -8.54 -35.49 By element: Atomic # 1 Polarization: 15.31 SS G_CDS: -5.44 Total: 9.87 kcal Atomic # 6 Polarization: -24.42 SS G_CDS: -2.45 Total: -26.87 kcal Atomic # 7 Polarization: -39.31 SS G_CDS: 0.22 Total: -39.09 kcal Atomic # 14 Polarization: 21.47 SS G_CDS: -5.02 Total: 16.45 kcal Total LS contribution 4.14 Total: 4.14 kcal Total: -26.95 -8.54 -35.49 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000049234959.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.210 kcal (2) G-P(sol) polarization free energy of solvation -26.947 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.264 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.539 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.485 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.725 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds