Wall clock time and date at job start Mon Mar 30 2020 02:33:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08999 * 109.46976 * 2 1 4 4 C 1.50701 * 109.47153 * 240.00682 * 2 1 3 5 5 H 1.08004 * 119.99456 * 240.00085 * 4 2 1 6 6 C 1.37867 * 120.00306 * 59.99840 * 4 2 1 7 7 N 1.31509 * 120.00059 * 359.97438 * 6 4 2 8 8 Si 1.86804 * 120.00052 * 179.97438 * 6 4 2 9 9 H 1.48502 * 109.47065 * 60.00009 * 8 6 4 10 10 H 1.48496 * 109.47317 * 179.97438 * 8 6 4 11 11 H 1.48497 * 109.46994 * 300.00181 * 8 6 4 12 12 N 1.46895 * 109.47131 * 120.00074 * 2 1 3 13 13 C 1.46904 * 111.00406 * 266.97297 * 12 2 1 14 14 C 1.52998 * 109.46893 * 266.42566 * 13 12 2 15 15 C 1.53000 * 117.50226 * 356.78095 * 14 13 12 16 16 C 1.53006 * 117.49905 * 65.43902 * 14 13 12 17 17 C 1.52998 * 109.47332 * 146.42500 * 13 12 2 18 18 C 1.53001 * 117.49666 * 12.70762 * 17 13 12 19 19 C 1.52992 * 117.49929 * 304.04567 * 17 13 12 20 20 H 1.09002 * 109.47087 * 64.77550 * 1 2 3 21 21 H 1.09003 * 109.46967 * 184.77415 * 1 2 3 22 22 H 1.08994 * 109.47596 * 304.77258 * 1 2 3 23 23 H 0.97009 * 120.00344 * 180.02562 * 7 6 4 24 24 H 1.00902 * 110.99950 * 30.92469 * 12 2 1 25 25 H 1.09001 * 109.46597 * 26.42454 * 13 12 2 26 26 H 1.08998 * 115.55298 * 211.10500 * 14 13 12 27 27 H 1.08996 * 117.50156 * 215.00410 * 15 14 13 28 28 H 1.09012 * 117.49662 * 0.02562 * 15 14 13 29 29 H 1.09002 * 117.49668 * 359.97436 * 16 14 13 30 30 H 1.08994 * 117.50195 * 144.97283 * 16 14 13 31 31 H 1.08995 * 115.54651 * 158.37713 * 17 13 12 32 32 H 1.08994 * 117.50170 * 0.02562 * 18 17 13 33 33 H 1.09007 * 117.49575 * 145.02362 * 18 17 13 34 34 H 1.09004 * 117.50253 * 214.97977 * 19 17 13 35 35 H 1.09003 * 117.49949 * 359.97438 * 19 17 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7103 -1.2305 5 1 2.6533 -1.5884 -1.1315 6 6 1.6993 -0.2392 -2.4827 7 7 0.9428 0.8298 -2.6033 8 14 2.3226 -1.1192 -4.0080 9 1 1.8282 -2.5195 -4.0083 10 1 1.8271 -0.4196 -5.2205 11 1 3.8076 -1.1186 -4.0077 12 7 2.0197 -0.6925 1.1994 13 6 2.2635 0.2574 2.2932 14 6 3.7300 0.6932 2.2728 15 6 4.6456 0.0437 1.2332 16 6 4.2100 1.5015 1.0657 17 6 1.9496 -0.4143 3.6315 18 6 1.7582 -1.9323 3.6323 19 6 0.5514 -1.0082 3.8131 20 1 -0.3633 0.4380 -0.9297 21 1 -0.3633 -1.0241 0.0855 22 1 -0.3634 0.5860 0.8441 23 1 0.7082 1.1611 -3.4844 24 1 1.3783 -1.4169 1.4858 25 1 1.6232 1.1303 2.1657 26 1 4.1624 0.9340 3.2439 27 1 5.6804 -0.1428 1.5204 28 1 4.2031 -0.6938 0.5634 29 1 3.4811 1.7225 0.2859 30 1 4.9579 2.2744 1.2427 31 1 2.4235 0.0337 4.5048 32 1 1.8563 -2.4525 2.6795 33 1 2.1058 -2.4830 4.5065 34 1 0.1054 -0.9513 4.8061 35 1 -0.1451 -0.9200 2.9793 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000049234959.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:33:47 Heat of formation + Delta-G solvation = 40.701177 kcal Electronic energy + Delta-G solvation = -14483.477116 eV Core-core repulsion = 12289.666516 eV Total energy + Delta-G solvation = -2193.810601 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 209.148 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.23797 -37.14188 -36.27741 -33.76700 -30.38611 -27.41079 -27.04062 -23.35670 -22.98902 -22.21875 -21.88598 -20.27412 -18.33462 -17.27152 -16.70775 -16.09895 -15.70208 -15.18896 -14.68510 -14.55207 -13.92583 -13.71575 -12.95232 -12.79425 -12.76481 -12.48259 -12.29313 -12.27325 -12.05445 -11.88293 -11.70216 -11.33257 -11.06910 -10.90022 -10.63830 -10.56432 -10.40141 -8.87600 -8.04991 -6.14501 1.43329 1.44386 1.51710 2.45707 2.90831 3.21423 3.23423 3.73262 3.82260 4.05121 4.16583 4.28314 4.37954 4.42299 4.50777 4.71321 4.82419 4.86323 4.88995 4.93568 5.01299 5.12335 5.17846 5.25067 5.31386 5.38137 5.42125 5.60908 5.73819 5.81904 5.89237 6.35104 6.73024 6.92248 6.99905 7.54759 8.99723 Molecular weight = 209.15amu Principal moments of inertia in cm(-1) A = 0.032894 B = 0.010412 C = 0.009180 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 851.027658 B = 2688.496429 C = 3049.503257 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.217 3.783 3 H 0.010 0.990 4 C -0.499 4.499 5 H 0.053 0.947 6 C 0.008 3.992 7 N -0.924 5.924 8 Si 0.953 3.047 9 H -0.273 1.273 10 H -0.288 1.288 11 H -0.275 1.275 12 N -0.674 5.674 13 C 0.140 3.860 14 C -0.133 4.133 15 C -0.157 4.157 16 C -0.197 4.197 17 C -0.154 4.154 18 C -0.169 4.169 19 C -0.187 4.187 20 H 0.062 0.938 21 H 0.030 0.970 22 H 0.018 0.982 23 H 0.258 0.742 24 H 0.331 0.669 25 H 0.023 0.977 26 H 0.120 0.880 27 H 0.095 0.905 28 H 0.094 0.906 29 H 0.063 0.937 30 H 0.099 0.901 31 H 0.124 0.876 32 H 0.091 0.909 33 H 0.113 0.887 34 H 0.114 0.886 35 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.713 -2.252 11.461 11.991 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.108 3.892 3 H 0.028 0.972 4 C -0.538 4.538 5 H 0.071 0.929 6 C -0.189 4.189 7 N -0.565 5.565 8 Si 0.779 3.221 9 H -0.198 1.198 10 H -0.213 1.213 11 H -0.200 1.200 12 N -0.307 5.307 13 C 0.030 3.970 14 C -0.151 4.151 15 C -0.194 4.194 16 C -0.234 4.234 17 C -0.173 4.173 18 C -0.206 4.206 19 C -0.224 4.224 20 H 0.081 0.919 21 H 0.049 0.951 22 H 0.037 0.963 23 H 0.067 0.933 24 H 0.152 0.848 25 H 0.040 0.960 26 H 0.138 0.862 27 H 0.113 0.887 28 H 0.112 0.888 29 H 0.082 0.918 30 H 0.117 0.883 31 H 0.142 0.858 32 H 0.109 0.891 33 H 0.131 0.869 34 H 0.132 0.868 35 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 3.281 -2.154 11.109 11.782 hybrid contribution -0.903 0.153 -1.031 1.379 sum 2.378 -2.001 10.077 10.546 Atomic orbital electron populations 1.22290 1.00714 0.98421 1.00395 1.19057 0.89364 0.93005 0.87765 0.97219 1.21381 1.29610 1.11986 0.90842 0.92874 1.25645 0.95714 0.95909 1.01662 1.69996 1.38341 1.24413 1.23717 0.85690 0.78652 0.78701 0.79012 1.19844 1.21349 1.20017 1.60912 1.51758 1.13616 1.04376 1.20441 0.93955 0.93124 0.89504 1.22347 0.94784 1.04042 0.93977 1.22837 0.98339 0.95545 1.02674 1.22929 1.03862 0.95575 1.01002 1.22505 1.00160 0.96690 0.97913 1.23029 1.01552 0.92472 1.03592 1.23042 0.91027 1.05191 1.03118 0.91872 0.95116 0.96296 0.93270 0.84831 0.95954 0.86228 0.88703 0.88801 0.91825 0.88269 0.85816 0.89052 0.86914 0.86776 0.90802 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -7.77 9.06 71.98 0.65 -7.12 16 2 C 0.22 10.83 1.98 44.17 0.09 10.91 16 3 H 0.01 0.56 5.29 -2.39 -0.01 0.55 16 4 C -0.50 -27.49 8.48 25.60 0.22 -27.27 16 5 H 0.05 2.95 7.81 -2.91 -0.02 2.93 16 6 C 0.01 0.46 5.29 84.65 0.45 0.91 16 7 N -0.92 -53.75 11.29 21.44 0.24 -53.51 16 8 Si 0.95 44.56 29.54 68.60 2.03 46.59 16 9 H -0.27 -12.43 7.11 99.48 0.71 -11.72 16 10 H -0.29 -13.27 7.11 99.48 0.71 -12.56 16 11 H -0.27 -12.64 7.11 99.48 0.71 -11.93 16 12 N -0.67 -27.70 3.99 -473.31 -1.89 -29.59 16 13 C 0.14 4.97 2.69 44.91 0.12 5.09 16 14 C -0.13 -4.43 5.74 -10.79 -0.06 -4.49 16 15 C -0.16 -5.69 9.80 30.62 0.30 -5.39 16 16 C -0.20 -7.34 9.92 30.62 0.30 -7.03 16 17 C -0.15 -4.24 5.67 -10.80 -0.06 -4.30 16 18 C -0.17 -4.32 9.66 30.62 0.30 -4.03 16 19 C -0.19 -4.79 9.83 30.62 0.30 -4.48 16 20 H 0.06 3.47 5.96 -2.39 -0.01 3.45 16 21 H 0.03 1.41 8.03 -2.39 -0.02 1.39 16 22 H 0.02 0.82 8.14 -2.39 -0.02 0.80 16 23 H 0.26 14.45 8.31 -92.70 -0.77 13.68 16 24 H 0.33 12.98 4.70 -89.69 -0.42 12.56 16 25 H 0.02 0.90 7.62 -2.39 -0.02 0.89 16 26 H 0.12 3.25 8.00 -2.39 -0.02 3.23 16 27 H 0.09 2.91 8.14 -2.39 -0.02 2.89 16 28 H 0.09 4.09 6.46 -2.38 -0.02 4.08 16 29 H 0.06 2.93 5.83 -2.39 -0.01 2.91 16 30 H 0.10 3.14 8.14 -2.39 -0.02 3.12 16 31 H 0.12 2.84 8.04 -2.39 -0.02 2.82 16 32 H 0.09 2.70 6.16 -2.39 -0.01 2.69 16 33 H 0.11 2.31 8.14 -2.38 -0.02 2.29 16 34 H 0.11 2.34 8.14 -2.39 -0.02 2.32 16 35 H 0.07 2.19 7.80 -2.39 -0.02 2.18 16 Total: -1.00 -58.77 274.99 3.62 -55.14 By element: Atomic # 1 Polarization: 27.93 SS G_CDS: 0.64 Total: 28.57 kcal Atomic # 6 Polarization: -49.80 SS G_CDS: 2.60 Total: -47.20 kcal Atomic # 7 Polarization: -81.45 SS G_CDS: -1.65 Total: -83.10 kcal Atomic # 14 Polarization: 44.56 SS G_CDS: 2.03 Total: 46.59 kcal Total: -58.77 3.62 -55.14 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000049234959.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.844 kcal (2) G-P(sol) polarization free energy of solvation -58.768 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.076 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.625 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.143 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.701 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds