Wall clock time and date at job start Mon Mar 30 2020 02:30:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30999 * 1 3 3 C 1.50693 * 119.99765 * 2 1 4 4 H 1.09001 * 109.47478 * 0.18577 * 3 2 1 5 5 C 1.52998 * 109.47180 * 240.18769 * 3 2 1 6 6 N 1.46506 * 109.47397 * 120.18692 * 3 2 1 7 7 C 1.36944 * 119.99721 * 65.71814 * 6 3 2 8 8 H 1.07992 * 119.99541 * 122.04310 * 7 6 3 9 9 C 1.38811 * 120.00242 * 302.04759 * 7 6 3 10 10 N 1.31622 * 119.99643 * 320.74665 * 9 7 6 11 11 Si 1.86794 * 120.00205 * 140.74624 * 9 7 6 12 12 H 1.48496 * 109.47028 * 60.00054 * 11 9 7 13 13 H 1.48507 * 109.47272 * 179.97438 * 11 9 7 14 14 H 1.48495 * 109.47345 * 299.99818 * 11 9 7 15 15 C 1.46497 * 120.00019 * 245.72575 * 6 3 2 16 16 C 1.54275 * 110.02743 * 241.68149 * 15 6 3 17 17 C 1.54895 * 104.19183 * 217.10717 * 16 15 6 18 18 C 1.54886 * 102.75048 * 37.94317 * 17 16 15 19 19 C 1.53876 * 110.03090 * 124.52076 * 15 6 3 20 20 H 1.08002 * 120.00482 * 180.02562 * 1 2 3 21 21 H 1.08000 * 120.00408 * 0.02562 * 1 2 3 22 22 H 1.07999 * 119.99880 * 179.97438 * 2 1 3 23 23 H 1.08998 * 109.47426 * 60.00071 * 5 3 2 24 24 H 1.09002 * 109.47182 * 180.02562 * 5 3 2 25 25 H 1.09003 * 109.46971 * 299.99754 * 5 3 2 26 26 H 0.97005 * 119.99748 * 185.10236 * 10 9 7 27 27 H 1.08996 * 110.02232 * 3.12724 * 15 6 3 28 28 H 1.08999 * 110.48563 * 335.78185 * 16 15 6 29 29 H 1.08994 * 110.48228 * 98.43198 * 16 15 6 30 30 H 1.08999 * 110.75442 * 279.62631 * 17 16 15 31 31 H 1.08996 * 110.91362 * 156.33563 * 17 16 15 32 32 H 1.08994 * 110.48566 * 203.37617 * 18 17 16 33 33 H 1.09000 * 110.48722 * 80.73748 * 18 17 16 34 34 H 1.09004 * 110.02734 * 238.56560 * 19 15 6 35 35 H 1.08992 * 110.03506 * 359.97438 * 19 15 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3051 0.0000 4 1 1.3551 2.1336 0.0033 5 6 2.9395 1.3882 -1.2516 6 7 2.9091 1.3808 1.1939 7 6 3.9545 0.5099 1.3488 8 1 4.9585 0.8881 1.4723 9 6 3.7237 -0.8589 1.3471 10 7 2.6579 -1.3472 1.9454 11 14 4.9257 -2.0076 0.4958 12 1 6.2668 -1.8708 1.1185 13 1 4.4555 -3.4092 0.6371 14 1 5.0105 -1.6564 -0.9445 15 6 2.6363 2.3881 2.2221 16 6 3.8422 3.3400 2.3624 17 6 3.9177 3.6360 3.8809 18 6 3.5514 2.2707 4.5140 19 6 2.4515 1.7082 3.5901 20 1 -0.5401 -0.9353 0.0004 21 1 -0.5401 0.9353 -0.0004 22 1 1.8500 -0.9353 0.0004 23 1 2.3104 1.3319 -2.1399 24 1 3.4848 2.3320 -1.2513 25 1 3.6479 0.5598 -1.2549 26 1 2.5344 -2.3073 2.0087 27 1 1.7414 2.9536 1.9623 28 1 4.7555 2.8512 2.0231 29 1 3.6696 4.2592 1.8026 30 1 3.1922 4.3993 4.1621 31 1 4.9247 3.9377 4.1689 32 1 3.1668 2.4097 5.5243 33 1 4.4177 1.6093 4.5222 34 1 1.4673 1.9446 3.9945 35 1 2.5644 0.6289 3.4889 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000070714987.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:30:06 Heat of formation + Delta-G solvation = 21.075903 kcal Electronic energy + Delta-G solvation = -14824.061569 eV Core-core repulsion = 12629.399952 eV Total energy + Delta-G solvation = -2194.661616 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 209.148 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.43122 -37.07595 -34.05689 -32.79304 -30.24597 -29.18719 -27.95951 -25.72709 -23.05145 -21.29383 -20.78851 -20.12089 -18.09275 -16.95137 -16.50916 -16.04797 -15.50848 -14.99550 -14.62050 -14.13296 -13.95567 -13.55885 -13.32924 -12.91949 -12.68208 -12.62315 -12.38379 -12.05042 -11.89648 -11.70813 -11.63810 -11.58570 -11.37120 -11.14032 -11.01901 -10.10566 -9.79276 -8.35402 -7.59010 -5.47195 1.40603 1.47572 1.52300 1.82272 2.49688 3.09650 3.74516 4.09435 4.12762 4.31111 4.37297 4.57150 4.77240 4.81119 4.85489 4.88181 5.00426 5.02400 5.05679 5.10991 5.14726 5.31642 5.31800 5.45920 5.56127 5.59962 5.69226 5.73859 5.86309 6.03728 6.12544 6.29320 6.71116 7.35799 7.93019 8.65328 9.03585 Molecular weight = 209.15amu Principal moments of inertia in cm(-1) A = 0.025137 B = 0.014793 C = 0.012186 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1113.648806 B = 1892.343755 C = 2297.196535 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.240 4.240 2 C -0.110 4.110 3 C 0.194 3.806 4 H 0.056 0.944 5 C -0.135 4.135 6 N -0.582 5.582 7 C -0.285 4.285 8 H 0.032 0.968 9 C 0.030 3.970 10 N -0.859 5.859 11 Si 0.903 3.097 12 H -0.278 1.278 13 H -0.296 1.296 14 H -0.276 1.276 15 C 0.164 3.836 16 C -0.126 4.126 17 C -0.111 4.111 18 C -0.111 4.111 19 C -0.134 4.134 20 H 0.081 0.919 21 H 0.094 0.906 22 H 0.088 0.912 23 H 0.057 0.943 24 H 0.052 0.948 25 H 0.036 0.964 26 H 0.252 0.748 27 H 0.045 0.955 28 H 0.048 0.952 29 H 0.060 0.940 30 H 0.075 0.925 31 H 0.067 0.933 32 H 0.064 0.936 33 H 0.040 0.960 34 H 0.037 0.963 35 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.783 6.773 -0.471 6.834 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.278 4.278 2 C -0.131 4.131 3 C 0.088 3.912 4 H 0.075 0.925 5 C -0.193 4.193 6 N -0.303 5.303 7 C -0.415 4.415 8 H 0.050 0.950 9 C -0.174 4.174 10 N -0.495 5.495 11 Si 0.731 3.269 12 H -0.204 1.204 13 H -0.222 1.222 14 H -0.202 1.202 15 C 0.058 3.942 16 C -0.165 4.165 17 C -0.149 4.149 18 C -0.149 4.149 19 C -0.174 4.174 20 H 0.099 0.901 21 H 0.113 0.887 22 H 0.106 0.894 23 H 0.076 0.924 24 H 0.071 0.929 25 H 0.055 0.945 26 H 0.062 0.938 27 H 0.064 0.936 28 H 0.067 0.933 29 H 0.079 0.921 30 H 0.094 0.906 31 H 0.085 0.915 32 H 0.083 0.917 33 H 0.059 0.941 34 H 0.056 0.944 35 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -0.903 6.619 -0.476 6.697 hybrid contribution 0.554 -1.352 -0.242 1.481 sum -0.349 5.267 -0.718 5.327 Atomic orbital electron populations 1.23438 0.95581 1.00442 1.08321 1.23744 0.95974 1.00463 0.92904 1.19752 0.91312 0.92336 0.87798 0.92545 1.21905 0.99610 1.01000 0.96833 1.44035 1.33120 1.36385 1.16747 1.18139 0.86833 0.85604 1.50898 0.95039 1.25806 0.96125 0.99277 0.96228 1.70389 1.30704 1.12003 1.36448 0.86417 0.81065 0.78432 0.81007 1.20378 1.22199 1.20181 1.21273 0.94546 0.89541 0.88841 1.22672 0.99513 0.98205 0.96128 1.22383 1.01121 0.96502 0.94864 1.22175 0.98014 0.96691 0.98054 1.22543 0.96376 1.02329 0.96113 0.90053 0.88737 0.89374 0.92446 0.92904 0.94477 0.93796 0.93632 0.93336 0.92110 0.90636 0.91475 0.91707 0.94102 0.94408 0.91510 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.24 -9.68 14.32 67.78 0.97 -8.71 16 2 C -0.11 -5.02 7.17 25.65 0.18 -4.83 16 3 C 0.19 8.40 3.13 44.24 0.14 8.54 16 4 H 0.06 2.27 7.23 -2.39 -0.02 2.25 16 5 C -0.13 -5.31 9.05 71.98 0.65 -4.66 16 6 N -0.58 -27.34 2.30 -654.39 -1.51 -28.85 16 7 C -0.29 -14.79 6.26 84.03 0.53 -14.26 16 8 H 0.03 1.75 7.15 -2.91 -0.02 1.73 16 9 C 0.03 1.57 3.55 84.86 0.30 1.88 16 10 N -0.86 -46.85 10.46 21.65 0.23 -46.63 16 11 Si 0.90 42.28 29.69 68.60 2.04 44.31 16 12 H -0.28 -12.93 7.11 99.48 0.71 -12.22 16 13 H -0.30 -13.92 7.11 99.48 0.71 -13.22 16 14 H -0.28 -12.78 7.11 99.48 0.71 -12.07 16 15 C 0.16 6.89 3.44 45.72 0.16 7.05 16 16 C -0.13 -4.62 6.42 31.67 0.20 -4.42 16 17 C -0.11 -3.47 6.91 31.89 0.22 -3.25 16 18 C -0.11 -4.05 6.83 31.67 0.22 -3.83 16 19 C -0.13 -5.77 6.25 31.32 0.20 -5.57 16 20 H 0.08 3.16 8.06 -2.91 -0.02 3.13 16 21 H 0.09 3.42 7.83 -2.91 -0.02 3.40 16 22 H 0.09 4.53 5.46 -2.91 -0.02 4.51 16 23 H 0.06 1.95 8.14 -2.39 -0.02 1.93 16 24 H 0.05 1.95 8.14 -2.39 -0.02 1.93 16 25 H 0.04 1.62 7.54 -2.39 -0.02 1.60 16 26 H 0.25 13.52 8.32 -92.70 -0.77 12.75 16 27 H 0.05 1.82 7.60 -2.39 -0.02 1.80 16 28 H 0.05 2.02 6.65 -2.39 -0.02 2.00 16 29 H 0.06 1.98 8.14 -2.39 -0.02 1.96 16 30 H 0.07 2.04 8.14 -2.39 -0.02 2.03 16 31 H 0.07 1.89 8.14 -2.39 -0.02 1.87 16 32 H 0.06 2.05 8.14 -2.39 -0.02 2.03 16 33 H 0.04 1.62 8.14 -2.39 -0.02 1.60 16 34 H 0.04 1.52 8.14 -2.39 -0.02 1.50 16 35 H 0.07 3.48 6.22 -2.39 -0.01 3.47 16 Total: -1.00 -54.80 274.29 5.55 -49.25 By element: Atomic # 1 Polarization: 12.96 SS G_CDS: 1.03 Total: 13.99 kcal Atomic # 6 Polarization: -35.84 SS G_CDS: 3.76 Total: -32.08 kcal Atomic # 7 Polarization: -74.20 SS G_CDS: -1.28 Total: -75.48 kcal Atomic # 14 Polarization: 42.28 SS G_CDS: 2.04 Total: 44.31 kcal Total: -54.80 5.55 -49.25 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000070714987.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.331 kcal (2) G-P(sol) polarization free energy of solvation -54.801 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.530 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.546 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.255 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.076 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds