Wall clock time and date at job start Mon Mar 30 2020 02:33:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09004 * 109.46765 * 2 1 4 4 C 1.50694 * 109.47211 * 239.99888 * 2 1 3 5 5 H 1.07999 * 120.00012 * 272.17196 * 4 2 1 6 6 C 1.37879 * 120.00063 * 92.17394 * 4 2 1 7 7 N 1.31509 * 119.99994 * 2.84733 * 6 4 2 8 8 Si 1.86799 * 120.00070 * 183.12270 * 6 4 2 9 9 H 1.48506 * 109.47397 * 179.72446 * 8 6 4 10 10 H 1.48501 * 109.47301 * 299.72400 * 8 6 4 11 11 H 1.48504 * 109.46989 * 59.72711 * 8 6 4 12 12 N 1.46897 * 109.47065 * 119.99680 * 2 1 3 13 13 C 1.46896 * 111.00142 * 52.90089 * 12 2 1 14 14 C 1.53002 * 109.47601 * 169.99919 * 13 12 2 15 15 C 1.53000 * 117.49900 * 243.74856 * 14 13 12 16 16 C 1.52996 * 117.50076 * 175.08541 * 14 13 12 17 17 C 1.46896 * 111.00324 * 288.94315 * 12 2 1 18 18 C 1.53003 * 117.49816 * 356.60893 * 17 12 2 19 19 C 1.53002 * 117.49941 * 287.94950 * 17 12 2 20 20 H 1.09002 * 109.47311 * 53.87973 * 1 2 3 21 21 H 1.08998 * 109.46760 * 173.87882 * 1 2 3 22 22 H 1.09004 * 109.46857 * 293.87855 * 1 2 3 23 23 H 0.97005 * 120.00505 * 355.13003 * 7 6 4 24 24 H 1.09001 * 109.46956 * 290.00152 * 13 12 2 25 25 H 1.09006 * 109.47146 * 49.99629 * 13 12 2 26 26 H 1.08997 * 115.54650 * 29.41121 * 14 13 12 27 27 H 1.09003 * 117.49594 * 359.97438 * 15 14 13 28 28 H 1.09000 * 117.50051 * 145.01466 * 15 14 13 29 29 H 1.08996 * 117.49973 * 214.97770 * 16 14 13 30 30 H 1.08999 * 117.49688 * 359.97438 * 16 14 13 31 31 H 1.08995 * 115.55458 * 142.27630 * 17 12 2 32 32 H 1.09005 * 117.49732 * 359.97438 * 18 17 12 33 33 H 1.09000 * 117.50093 * 145.02058 * 18 17 12 34 34 H 1.09002 * 117.49579 * 214.97782 * 19 17 12 35 35 H 1.08996 * 117.50170 * 359.97438 * 19 17 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2304 5 1 2.1789 -1.7803 -1.2142 6 6 2.3049 0.0055 -2.3768 7 7 2.1801 1.3146 -2.3798 8 14 2.8439 -0.8849 -3.9280 9 1 3.0666 0.1033 -5.0140 10 1 4.1057 -1.6216 -3.6628 11 1 1.7879 -1.8440 -4.3405 12 7 2.0197 -0.6924 1.1994 13 6 1.4152 -2.0257 1.3213 14 6 2.1253 -2.8086 2.4276 15 6 2.8852 -4.0731 2.0221 16 6 1.5654 -4.1856 2.7895 17 6 1.7754 0.1086 2.4064 18 6 1.1594 1.4967 2.2203 19 6 2.6333 1.3590 2.6099 20 1 -0.3634 0.6058 -0.8301 21 1 -0.3633 -1.0218 -0.1096 22 1 -0.3633 0.4160 0.9398 23 1 1.8291 1.7703 -1.5987 24 1 0.3585 -1.9243 1.5687 25 1 1.5175 -2.5588 0.3759 26 1 2.5435 -2.2072 3.2348 27 1 2.8788 -4.3475 0.9672 28 1 3.8030 -4.3039 2.5628 29 1 1.6156 -4.4905 3.8348 30 1 0.6910 -4.5337 2.2397 31 1 1.4881 -0.4546 3.2942 32 1 0.9357 1.8157 1.2022 33 1 0.4670 1.8468 2.9859 34 1 2.9100 1.6186 3.6318 35 1 3.3791 1.5871 1.8486 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000070736540.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:33:52 Heat of formation + Delta-G solvation = 57.115708 kcal Electronic energy + Delta-G solvation = -14419.880238 eV Core-core repulsion = 12226.781425 eV Total energy + Delta-G solvation = -2193.098813 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 209.148 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -38.80529 -36.62909 -34.09993 -32.06942 -28.94645 -25.34567 -24.71053 -22.09207 -21.75447 -21.69771 -20.44351 -18.65267 -16.75914 -15.79760 -15.19304 -14.67053 -13.79972 -13.71795 -13.11281 -12.70563 -12.58844 -12.31826 -11.54783 -11.29192 -11.15129 -10.97592 -10.81008 -10.73462 -10.49446 -10.35658 -10.11064 -9.99275 -9.76626 -9.54971 -9.30807 -8.53712 -8.28982 -7.06088 -6.33912 -4.03337 3.44924 3.46934 3.65273 4.10926 4.40544 4.53991 4.78571 5.10902 5.29216 5.34427 5.41153 5.50878 5.57030 5.79000 5.83958 5.91796 6.13075 6.14906 6.18609 6.26368 6.35007 6.40452 6.44933 6.52676 6.58020 6.73592 6.78607 6.80950 7.09972 7.31049 7.87615 8.21099 8.39779 8.57121 8.89921 9.66343 11.04042 Molecular weight = 209.15amu Principal moments of inertia in cm(-1) A = 0.023901 B = 0.012064 C = 0.008992 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1171.225539 B = 2320.375321 C = 3113.164070 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.189 3.811 3 H 0.053 0.947 4 C -0.575 4.575 5 H 0.052 0.948 6 C 0.021 3.979 7 N -0.914 5.914 8 Si 1.068 2.932 9 H -0.283 1.283 10 H -0.287 1.287 11 H -0.289 1.289 12 N -0.490 5.490 13 C 0.093 3.907 14 C -0.138 4.138 15 C -0.175 4.175 16 C -0.191 4.191 17 C 0.024 3.976 18 C -0.220 4.220 19 C -0.178 4.178 20 H 0.045 0.955 21 H 0.039 0.961 22 H 0.030 0.970 23 H 0.267 0.733 24 H 0.027 0.973 25 H 0.084 0.916 26 H 0.101 0.899 27 H 0.094 0.906 28 H 0.087 0.913 29 H 0.087 0.913 30 H 0.089 0.911 31 H 0.099 0.901 32 H 0.108 0.892 33 H 0.080 0.920 34 H 0.084 0.916 35 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.593 -5.417 8.871 10.516 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C 0.083 3.917 3 H 0.071 0.929 4 C -0.614 4.614 5 H 0.071 0.929 6 C -0.183 4.183 7 N -0.550 5.550 8 Si 0.896 3.104 9 H -0.209 1.209 10 H -0.214 1.214 11 H -0.215 1.215 12 N -0.211 5.211 13 C -0.035 4.035 14 C -0.157 4.157 15 C -0.212 4.212 16 C -0.229 4.229 17 C -0.086 4.086 18 C -0.259 4.259 19 C -0.216 4.216 20 H 0.064 0.936 21 H 0.059 0.941 22 H 0.049 0.951 23 H 0.079 0.921 24 H 0.045 0.955 25 H 0.102 0.898 26 H 0.119 0.881 27 H 0.112 0.888 28 H 0.105 0.895 29 H 0.105 0.895 30 H 0.108 0.892 31 H 0.116 0.884 32 H 0.126 0.874 33 H 0.098 0.902 34 H 0.102 0.898 35 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -0.570 -5.247 7.227 8.949 hybrid contribution -1.389 -0.110 1.760 2.245 sum -1.959 -5.357 8.987 10.644 Atomic orbital electron populations 1.22690 1.01581 1.00142 0.98911 1.19627 0.88964 0.95860 0.87279 0.92883 1.21827 1.47998 0.95449 0.96132 0.92945 1.25787 0.94824 0.96002 1.01732 1.70816 1.43036 1.08038 1.33148 0.83558 0.76376 0.74949 0.75489 1.20857 1.21389 1.21538 1.62281 1.56787 1.01240 1.00813 1.21572 0.94133 0.90523 0.97231 1.22414 1.02832 0.89389 1.01053 1.22945 0.94802 1.02696 1.00731 1.22951 0.97884 1.01673 1.00360 1.22615 1.02172 0.88063 0.95785 1.23645 0.95913 1.03170 1.03145 1.23016 0.94177 1.03118 1.01325 0.93584 0.94149 0.95125 0.92108 0.95500 0.89808 0.88116 0.88777 0.89470 0.89488 0.89206 0.88350 0.87424 0.90165 0.89773 0.88674 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.94 7.60 37.16 0.28 -3.65 16 2 C 0.19 4.64 1.72 -68.87 -0.12 4.52 16 3 H 0.05 1.43 4.41 -51.93 -0.23 1.20 16 4 C -0.58 -15.85 8.11 -34.44 -0.28 -16.13 16 5 H 0.05 1.45 6.39 -52.49 -0.34 1.12 16 6 C 0.02 0.58 5.46 -17.82 -0.10 0.48 16 7 N -0.91 -27.27 13.62 55.43 0.75 -26.52 16 8 Si 1.07 25.19 29.90 -169.99 -5.08 20.11 16 9 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 10 H -0.29 -6.55 7.11 56.52 0.40 -6.15 16 11 H -0.29 -6.50 7.11 56.52 0.40 -6.10 16 12 N -0.49 -10.64 4.62 -220.11 -1.02 -11.66 16 13 C 0.09 1.82 4.13 -3.83 -0.02 1.80 16 14 C -0.14 -2.26 5.49 -90.62 -0.50 -2.75 16 15 C -0.17 -2.60 10.18 -26.69 -0.27 -2.87 16 16 C -0.19 -2.60 10.25 -26.69 -0.27 -2.87 16 17 C 0.02 0.44 5.11 -67.71 -0.35 0.10 16 18 C -0.22 -3.97 7.92 -26.69 -0.21 -4.18 16 19 C -0.18 -3.16 10.20 -26.69 -0.27 -3.44 16 20 H 0.05 1.09 8.14 -51.93 -0.42 0.67 16 21 H 0.04 0.89 6.92 -51.93 -0.36 0.53 16 22 H 0.03 0.62 5.70 -51.93 -0.30 0.32 16 23 H 0.27 7.93 6.54 -40.82 -0.27 7.66 16 24 H 0.03 0.52 6.96 -51.93 -0.36 0.16 16 25 H 0.08 1.80 6.01 -51.93 -0.31 1.49 16 26 H 0.10 1.63 6.91 -51.93 -0.36 1.27 16 27 H 0.09 1.46 8.03 -51.93 -0.42 1.04 16 28 H 0.09 1.17 8.14 -51.93 -0.42 0.75 16 29 H 0.09 1.03 8.14 -51.93 -0.42 0.60 16 30 H 0.09 1.19 8.14 -51.93 -0.42 0.76 16 31 H 0.10 1.66 6.90 -51.93 -0.36 1.30 16 32 H 0.11 2.21 4.96 -51.93 -0.26 1.95 16 33 H 0.08 1.26 8.14 -51.93 -0.42 0.83 16 34 H 0.08 1.26 8.14 -51.93 -0.42 0.83 16 35 H 0.09 1.89 8.14 -51.93 -0.42 1.47 16 LS Contribution 272.38 15.07 4.10 4.10 Total: -1.00 -28.91 272.38 -8.65 -37.56 By element: Atomic # 1 Polarization: 10.70 SS G_CDS: -5.31 Total: 5.39 kcal Atomic # 6 Polarization: -26.89 SS G_CDS: -2.10 Total: -28.99 kcal Atomic # 7 Polarization: -37.91 SS G_CDS: -0.26 Total: -38.17 kcal Atomic # 14 Polarization: 25.19 SS G_CDS: -5.08 Total: 20.11 kcal Total LS contribution 4.10 Total: 4.10 kcal Total: -28.91 -8.65 -37.56 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000070736540.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.678 kcal (2) G-P(sol) polarization free energy of solvation -28.912 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.766 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.651 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.562 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.116 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds