Wall clock time and date at job start Mon Mar 30 2020 02:18:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09006 * 109.45410 * 2 1 4 4 C 1.53039 * 109.46160 * 240.02762 * 2 1 3 5 5 H 1.09006 * 109.50499 * 179.17883 * 4 2 1 6 6 C 1.50704 * 109.50172 * 59.10611 * 4 2 1 7 7 H 1.07999 * 119.99509 * 274.87927 * 6 4 2 8 8 C 1.37873 * 120.00212 * 94.88832 * 6 4 2 9 9 N 1.31512 * 120.00021 * 175.00467 * 8 6 4 10 10 Si 1.86797 * 120.00010 * 354.99735 * 8 6 4 11 11 H 1.48493 * 109.47452 * 275.45010 * 10 8 6 12 12 H 1.48498 * 109.46873 * 35.45230 * 10 8 6 13 13 H 1.48501 * 109.47051 * 155.44573 * 10 8 6 14 14 C 1.53111 * 109.31247 * 299.14215 * 4 2 1 15 15 C 1.53122 * 109.16265 * 302.36588 * 14 4 2 16 16 C 1.53040 * 109.27623 * 57.65007 * 15 14 4 17 17 N 1.46845 * 109.52591 * 300.82273 * 16 15 14 18 18 C 1.46892 * 111.00062 * 185.83780 * 17 16 15 19 19 C 1.53002 * 117.49797 * 134.14858 * 18 17 16 20 20 C 1.53000 * 117.49820 * 65.49210 * 18 17 16 21 21 H 1.08997 * 109.47013 * 184.55405 * 1 2 3 22 22 H 1.09005 * 109.46937 * 304.55103 * 1 2 3 23 23 H 1.08993 * 109.47495 * 64.55734 * 1 2 3 24 24 H 0.96996 * 120.00640 * 179.97438 * 9 8 6 25 25 H 1.09007 * 109.52353 * 62.26773 * 14 4 2 26 26 H 1.08998 * 109.52935 * 182.45927 * 14 4 2 27 27 H 1.08999 * 109.50458 * 177.59155 * 15 14 4 28 28 H 1.09006 * 109.49969 * 297.67453 * 15 14 4 29 29 H 1.09003 * 109.46079 * 60.84194 * 16 15 14 30 30 H 1.08996 * 109.46073 * 180.80381 * 16 15 14 31 31 H 1.09007 * 115.55448 * 279.82366 * 18 17 16 32 32 H 1.08999 * 117.49877 * 0.02562 * 19 18 17 33 33 H 1.09001 * 117.49900 * 145.02273 * 19 18 17 34 34 H 1.09004 * 117.49828 * 214.98148 * 20 18 17 35 35 H 1.09000 * 117.50279 * 359.97199 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8930 1.0278 0.0000 4 6 2.0398 -0.7209 -1.2500 5 1 3.1298 -0.7085 -1.2581 6 6 1.5197 -0.0233 -2.4804 7 1 0.5415 -0.2682 -2.8671 8 6 2.2927 0.9274 -3.1126 9 7 1.8821 1.4650 -4.2404 10 14 3.9232 1.4520 -2.3670 11 1 3.6862 2.5108 -1.3532 12 1 4.5704 0.2827 -1.7196 13 1 4.8093 1.9792 -3.4357 14 6 1.5451 -2.1698 -1.2362 15 6 2.0277 -2.8535 0.0461 16 6 1.5174 -2.0713 1.2585 17 7 2.0185 -0.6923 1.1994 18 6 1.6636 0.0495 2.4165 19 6 2.7590 0.8891 3.0769 20 6 2.2910 -0.4121 3.7334 21 1 -0.3633 -1.0244 0.0816 22 1 -0.3633 0.5829 0.8465 23 1 -0.3634 0.4415 -0.9279 24 1 2.4257 2.1341 -4.6850 25 1 0.4556 -2.1830 -1.2681 26 1 1.9422 -2.6987 -2.1025 27 1 1.6428 -3.8726 0.0822 28 1 3.1175 -2.8753 0.0588 29 1 0.4274 -2.0623 1.2523 30 1 1.8712 -2.5474 2.1730 31 1 0.6442 0.4341 2.4523 32 1 3.7430 0.8913 2.6079 33 1 2.4604 1.8258 3.5474 34 1 1.6847 -0.3309 4.6355 35 1 2.9669 -1.2665 3.6967 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000107226635.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:18:58 Heat of formation + Delta-G solvation = 20.746468 kcal Electronic energy + Delta-G solvation = -14714.047472 eV Core-core repulsion = 12519.371570 eV Total energy + Delta-G solvation = -2194.675902 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 209.148 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -39.17664 -36.12037 -32.80275 -31.46475 -30.66956 -26.91108 -24.83001 -22.81194 -22.31810 -21.23416 -19.90831 -17.73905 -16.78673 -16.12987 -15.05800 -14.42237 -14.09844 -13.56462 -13.10905 -12.96642 -12.59247 -12.33512 -11.88235 -11.69362 -11.31797 -11.18750 -11.01882 -10.70677 -10.61875 -10.33235 -9.94657 -9.87119 -9.61992 -9.33027 -9.05269 -8.88200 -8.46427 -7.64572 -6.04295 -4.03373 3.35416 3.42360 3.47885 4.05272 4.31579 4.47505 5.18564 5.20828 5.27974 5.43050 5.56465 5.65468 5.79040 5.81913 5.92544 6.05278 6.08530 6.16782 6.22034 6.30605 6.39005 6.44743 6.49792 6.67193 6.76961 6.85983 6.94703 7.07784 7.44186 7.51444 7.69607 7.80105 7.95884 8.58490 9.00959 9.59545 11.08483 Molecular weight = 209.15amu Principal moments of inertia in cm(-1) A = 0.031563 B = 0.012427 C = 0.010639 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 886.914776 B = 2252.597741 C = 2631.181954 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.089 3.911 3 H 0.068 0.932 4 C 0.016 3.984 5 H 0.046 0.954 6 C -0.504 4.504 7 H 0.072 0.928 8 C 0.071 3.929 9 N -0.902 5.902 10 Si 0.874 3.126 11 H -0.276 1.276 12 H -0.259 1.259 13 H -0.293 1.293 14 C -0.105 4.105 15 C -0.119 4.119 16 C 0.061 3.939 17 N -0.512 5.512 18 C 0.009 3.991 19 C -0.168 4.168 20 C -0.177 4.177 21 H 0.049 0.951 22 H 0.030 0.970 23 H 0.077 0.923 24 H 0.263 0.737 25 H 0.050 0.950 26 H 0.054 0.946 27 H 0.052 0.948 28 H 0.061 0.939 29 H 0.032 0.968 30 H 0.059 0.941 31 H 0.084 0.916 32 H 0.097 0.903 33 H 0.088 0.912 34 H 0.088 0.912 35 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.284 -4.340 12.679 13.404 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.018 4.018 3 H 0.086 0.914 4 C -0.003 4.003 5 H 0.064 0.936 6 C -0.542 4.542 7 H 0.090 0.910 8 C -0.131 4.131 9 N -0.540 5.540 10 Si 0.703 3.297 11 H -0.202 1.202 12 H -0.184 1.184 13 H -0.219 1.219 14 C -0.143 4.143 15 C -0.157 4.157 16 C -0.067 4.067 17 N -0.236 5.236 18 C -0.100 4.100 19 C -0.206 4.206 20 C -0.215 4.215 21 H 0.067 0.933 22 H 0.049 0.951 23 H 0.096 0.904 24 H 0.073 0.927 25 H 0.069 0.931 26 H 0.073 0.927 27 H 0.071 0.929 28 H 0.080 0.920 29 H 0.050 0.950 30 H 0.078 0.922 31 H 0.102 0.898 32 H 0.116 0.884 33 H 0.107 0.893 34 H 0.106 0.894 35 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 0.844 -4.232 12.491 13.215 hybrid contribution -0.080 0.546 0.384 0.673 sum 0.764 -3.685 12.875 13.414 Atomic orbital electron populations 1.22316 0.98378 1.00532 1.01685 1.22109 0.92725 0.97864 0.89112 0.91357 1.19335 0.97384 0.91560 0.92052 0.93592 1.20974 1.04217 1.20758 1.08255 0.90951 1.25073 0.97727 0.95913 0.94341 1.69911 1.38901 1.28694 1.16532 0.86909 0.84537 0.79487 0.78810 1.20187 1.18411 1.21914 1.21611 0.99874 0.97733 0.95061 1.21663 1.01035 0.97342 0.95625 1.21958 0.97349 0.89288 0.98065 1.62118 1.59102 1.01527 1.00885 1.22424 0.95674 1.01927 0.89997 1.22993 1.00128 0.94181 1.03273 1.22963 1.04134 0.98965 0.95400 0.93260 0.95141 0.90399 0.92750 0.93108 0.92738 0.92919 0.92021 0.94956 0.92244 0.89846 0.88433 0.89311 0.89385 0.88693 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.36 7.99 37.16 0.30 -3.06 16 2 C 0.09 1.89 2.38 -67.72 -0.16 1.73 16 3 H 0.07 1.59 7.49 -51.93 -0.39 1.20 16 4 C 0.02 0.37 1.63 -91.69 -0.15 0.22 16 5 H 0.05 1.15 5.16 -51.93 -0.27 0.88 16 6 C -0.50 -13.79 7.56 -34.44 -0.26 -14.05 16 7 H 0.07 2.15 7.91 -52.49 -0.41 1.73 16 8 C 0.07 2.03 5.47 -17.82 -0.10 1.93 16 9 N -0.90 -27.43 13.96 55.43 0.77 -26.65 16 10 Si 0.87 21.87 26.90 -169.99 -4.57 17.30 16 11 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 12 H -0.26 -6.32 6.07 56.52 0.34 -5.98 16 13 H -0.29 -7.31 7.11 56.52 0.40 -6.91 16 14 C -0.10 -2.13 4.96 -26.61 -0.13 -2.27 16 15 C -0.12 -2.03 6.09 -26.65 -0.16 -2.19 16 16 C 0.06 1.01 5.11 -3.83 -0.02 0.99 16 17 N -0.51 -9.44 4.73 -218.76 -1.03 -10.47 16 18 C 0.01 0.14 4.83 -67.72 -0.33 -0.19 16 19 C -0.17 -2.41 10.46 -26.69 -0.28 -2.69 16 20 C -0.18 -2.31 9.80 -26.69 -0.26 -2.57 16 21 H 0.05 0.92 4.80 -51.93 -0.25 0.67 16 22 H 0.03 0.54 6.61 -51.93 -0.34 0.19 16 23 H 0.08 1.70 6.93 -51.93 -0.36 1.34 16 24 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 25 H 0.05 1.03 6.67 -51.92 -0.35 0.68 16 26 H 0.05 1.12 8.14 -51.93 -0.42 0.70 16 27 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 28 H 0.06 1.08 8.14 -51.93 -0.42 0.65 16 29 H 0.03 0.53 6.10 -51.93 -0.32 0.22 16 30 H 0.06 0.88 7.31 -51.93 -0.38 0.50 16 31 H 0.08 1.33 6.49 -51.93 -0.34 0.99 16 32 H 0.10 1.50 8.14 -51.93 -0.42 1.08 16 33 H 0.09 1.12 8.14 -51.93 -0.42 0.70 16 34 H 0.09 0.98 8.14 -51.93 -0.42 0.55 16 35 H 0.09 1.24 7.84 -51.93 -0.41 0.84 16 LS Contribution 262.62 15.07 3.96 3.96 Total: -1.00 -28.89 262.62 -7.97 -36.86 By element: Atomic # 1 Polarization: 6.69 SS G_CDS: -5.54 Total: 1.15 kcal Atomic # 6 Polarization: -20.59 SS G_CDS: -1.55 Total: -22.15 kcal Atomic # 7 Polarization: -36.87 SS G_CDS: -0.26 Total: -37.13 kcal Atomic # 14 Polarization: 21.87 SS G_CDS: -4.57 Total: 17.30 kcal Total LS contribution 3.96 Total: 3.96 kcal Total: -28.89 -7.97 -36.86 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000107226635.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.611 kcal (2) G-P(sol) polarization free energy of solvation -28.894 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.717 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.971 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.864 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.746 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds