Wall clock time and date at job start Mon Mar 30 2020 02:18:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09006 * 109.45410 * 2 1 4 4 C 1.53039 * 109.46160 * 240.02762 * 2 1 3 5 5 H 1.09006 * 109.50499 * 179.17883 * 4 2 1 6 6 C 1.50704 * 109.50172 * 59.10611 * 4 2 1 7 7 H 1.07999 * 119.99509 * 274.87927 * 6 4 2 8 8 C 1.37873 * 120.00212 * 94.88832 * 6 4 2 9 9 N 1.31512 * 120.00021 * 175.00467 * 8 6 4 10 10 Si 1.86797 * 120.00010 * 354.99735 * 8 6 4 11 11 H 1.48493 * 109.47452 * 275.45010 * 10 8 6 12 12 H 1.48498 * 109.46873 * 35.45230 * 10 8 6 13 13 H 1.48501 * 109.47051 * 155.44573 * 10 8 6 14 14 C 1.53111 * 109.31247 * 299.14215 * 4 2 1 15 15 C 1.53122 * 109.16265 * 302.36588 * 14 4 2 16 16 C 1.53040 * 109.27623 * 57.65007 * 15 14 4 17 17 N 1.46845 * 109.52591 * 300.82273 * 16 15 14 18 18 C 1.46892 * 111.00062 * 185.83780 * 17 16 15 19 19 C 1.53002 * 117.49797 * 134.14858 * 18 17 16 20 20 C 1.53000 * 117.49820 * 65.49210 * 18 17 16 21 21 H 1.08997 * 109.47013 * 184.55405 * 1 2 3 22 22 H 1.09005 * 109.46937 * 304.55103 * 1 2 3 23 23 H 1.08993 * 109.47495 * 64.55734 * 1 2 3 24 24 H 0.96996 * 120.00640 * 179.97438 * 9 8 6 25 25 H 1.09007 * 109.52353 * 62.26773 * 14 4 2 26 26 H 1.08998 * 109.52935 * 182.45927 * 14 4 2 27 27 H 1.08999 * 109.50458 * 177.59155 * 15 14 4 28 28 H 1.09006 * 109.49969 * 297.67453 * 15 14 4 29 29 H 1.09003 * 109.46079 * 60.84194 * 16 15 14 30 30 H 1.08996 * 109.46073 * 180.80381 * 16 15 14 31 31 H 1.09007 * 115.55448 * 279.82366 * 18 17 16 32 32 H 1.08999 * 117.49877 * 0.02562 * 19 18 17 33 33 H 1.09001 * 117.49900 * 145.02273 * 19 18 17 34 34 H 1.09004 * 117.49828 * 214.98148 * 20 18 17 35 35 H 1.09000 * 117.50279 * 359.97199 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8930 1.0278 0.0000 4 6 2.0398 -0.7209 -1.2500 5 1 3.1298 -0.7085 -1.2581 6 6 1.5197 -0.0233 -2.4804 7 1 0.5415 -0.2682 -2.8671 8 6 2.2927 0.9274 -3.1126 9 7 1.8821 1.4650 -4.2404 10 14 3.9232 1.4520 -2.3670 11 1 3.6862 2.5108 -1.3532 12 1 4.5704 0.2827 -1.7196 13 1 4.8093 1.9792 -3.4357 14 6 1.5451 -2.1698 -1.2362 15 6 2.0277 -2.8535 0.0461 16 6 1.5174 -2.0713 1.2585 17 7 2.0185 -0.6923 1.1994 18 6 1.6636 0.0495 2.4165 19 6 2.7590 0.8891 3.0769 20 6 2.2910 -0.4121 3.7334 21 1 -0.3633 -1.0244 0.0816 22 1 -0.3633 0.5829 0.8465 23 1 -0.3634 0.4415 -0.9279 24 1 2.4257 2.1341 -4.6850 25 1 0.4556 -2.1830 -1.2681 26 1 1.9422 -2.6987 -2.1025 27 1 1.6428 -3.8726 0.0822 28 1 3.1175 -2.8753 0.0588 29 1 0.4274 -2.0623 1.2523 30 1 1.8712 -2.5474 2.1730 31 1 0.6442 0.4341 2.4523 32 1 3.7430 0.8913 2.6079 33 1 2.4604 1.8258 3.5474 34 1 1.6847 -0.3309 4.6355 35 1 2.9669 -1.2665 3.6967 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000107226635.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:18:58 Heat of formation + Delta-G solvation = 2.471447 kcal Electronic energy + Delta-G solvation = -14714.839937 eV Core-core repulsion = 12519.371570 eV Total energy + Delta-G solvation = -2195.468366 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 209.148 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.64877 -37.43720 -34.79228 -32.95112 -32.43284 -28.61808 -26.60474 -24.37716 -23.58849 -22.58309 -21.34452 -19.32928 -18.86403 -17.53383 -16.56175 -16.02995 -15.81112 -15.03411 -14.81777 -14.53994 -14.16095 -14.06334 -13.35178 -13.19772 -12.98184 -12.83306 -12.45265 -12.37534 -12.21001 -11.82239 -11.59333 -11.26675 -11.22020 -10.99950 -10.86385 -10.65874 -10.52975 -9.05243 -8.26888 -6.28386 1.34690 1.35780 1.46818 2.35870 2.93008 2.95476 3.15517 4.05918 4.06822 4.13703 4.19604 4.26340 4.39891 4.45893 4.55404 4.70411 4.72015 4.81034 4.84642 4.94805 5.00844 5.08023 5.15140 5.19326 5.22543 5.34092 5.35779 5.41040 5.68815 5.70979 5.78801 6.22566 6.44506 6.46777 6.80363 7.37022 8.89610 Molecular weight = 209.15amu Principal moments of inertia in cm(-1) A = 0.031563 B = 0.012427 C = 0.010639 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 886.914776 B = 2252.597741 C = 2631.181954 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.098 3.902 3 H 0.042 0.958 4 C 0.014 3.986 5 H 0.032 0.968 6 C -0.497 4.497 7 H 0.035 0.965 8 C 0.014 3.986 9 N -0.951 5.951 10 Si 0.935 3.065 11 H -0.271 1.271 12 H -0.248 1.248 13 H -0.291 1.291 14 C -0.104 4.104 15 C -0.112 4.112 16 C 0.060 3.940 17 N -0.521 5.521 18 C -0.018 4.018 19 C -0.174 4.174 20 C -0.147 4.147 21 H 0.061 0.939 22 H 0.051 0.949 23 H 0.044 0.956 24 H 0.264 0.736 25 H 0.047 0.953 26 H 0.044 0.956 27 H 0.084 0.916 28 H 0.059 0.941 29 H 0.035 0.965 30 H 0.087 0.913 31 H 0.085 0.915 32 H 0.083 0.917 33 H 0.105 0.895 34 H 0.115 0.885 35 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.937 -5.423 15.702 16.639 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.010 4.010 3 H 0.061 0.939 4 C -0.005 4.005 5 H 0.051 0.949 6 C -0.536 4.536 7 H 0.054 0.946 8 C -0.183 4.183 9 N -0.591 5.591 10 Si 0.760 3.240 11 H -0.196 1.196 12 H -0.172 1.172 13 H -0.217 1.217 14 C -0.142 4.142 15 C -0.149 4.149 16 C -0.067 4.067 17 N -0.245 5.245 18 C -0.127 4.127 19 C -0.212 4.212 20 C -0.184 4.184 21 H 0.079 0.921 22 H 0.069 0.931 23 H 0.064 0.936 24 H 0.072 0.928 25 H 0.066 0.934 26 H 0.063 0.937 27 H 0.102 0.898 28 H 0.078 0.922 29 H 0.053 0.947 30 H 0.106 0.894 31 H 0.102 0.898 32 H 0.101 0.899 33 H 0.123 0.877 34 H 0.133 0.867 35 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 1.497 -5.334 15.540 16.498 hybrid contribution -0.359 0.841 -0.549 1.066 sum 1.138 -4.493 14.991 15.691 Atomic orbital electron populations 1.22188 0.97573 1.01340 1.00824 1.21681 0.93195 0.96357 0.89780 0.93919 1.19280 0.96383 0.93418 0.91430 0.94942 1.21220 1.02525 1.20317 1.09515 0.94642 1.25842 1.01393 0.96301 0.94749 1.70048 1.40665 1.30077 1.18339 0.85936 0.80504 0.79453 0.78059 1.19592 1.17206 1.21709 1.21531 0.99612 0.95941 0.97068 1.21622 1.00931 0.98691 0.93702 1.22058 0.97564 0.88212 0.98846 1.62005 1.59327 1.02413 1.00711 1.22511 0.96240 1.03629 0.90273 1.23067 0.98899 0.95819 1.03402 1.23049 1.02929 0.97972 0.94445 0.92063 0.93056 0.93647 0.92751 0.93412 0.93687 0.89796 0.92240 0.94655 0.89449 0.89789 0.89853 0.87691 0.86716 0.88322 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -6.25 7.99 71.98 0.58 -5.67 16 2 C 0.10 4.10 2.38 44.94 0.11 4.20 16 3 H 0.04 1.98 7.49 -2.38 -0.02 1.96 16 4 C 0.01 0.66 1.63 -11.49 -0.02 0.64 16 5 H 0.03 1.60 5.16 -2.38 -0.01 1.59 16 6 C -0.50 -28.16 7.56 25.60 0.19 -27.97 16 7 H 0.04 2.22 7.91 -2.91 -0.02 2.19 16 8 C 0.01 0.82 5.47 84.65 0.46 1.28 16 9 N -0.95 -59.92 13.96 21.45 0.30 -59.62 16 10 Si 0.93 45.95 26.90 68.60 1.85 47.80 16 11 H -0.27 -12.95 7.11 99.48 0.71 -12.25 16 12 H -0.25 -11.62 6.07 99.48 0.60 -11.01 16 13 H -0.29 -14.09 7.11 99.48 0.71 -13.39 16 14 C -0.10 -4.13 4.96 30.67 0.15 -3.98 16 15 C -0.11 -3.47 6.09 30.65 0.19 -3.29 16 16 C 0.06 1.78 5.11 86.33 0.44 2.22 16 17 N -0.52 -17.90 4.73 -846.02 -4.00 -21.90 16 18 C -0.02 -0.51 4.83 44.92 0.22 -0.30 16 19 C -0.17 -4.48 10.46 30.62 0.32 -4.16 16 20 C -0.15 -3.18 9.80 30.62 0.30 -2.88 16 21 H 0.06 2.20 4.80 -2.39 -0.01 2.19 16 22 H 0.05 1.75 6.61 -2.38 -0.02 1.73 16 23 H 0.04 2.03 6.93 -2.39 -0.02 2.02 16 24 H 0.26 15.66 8.31 -92.71 -0.77 14.89 16 25 H 0.05 1.90 6.67 -2.38 -0.02 1.89 16 26 H 0.04 1.84 8.14 -2.39 -0.02 1.82 16 27 H 0.08 2.12 8.14 -2.39 -0.02 2.10 16 28 H 0.06 1.89 8.14 -2.38 -0.02 1.87 16 29 H 0.04 1.04 6.10 -2.39 -0.01 1.02 16 30 H 0.09 2.14 7.31 -2.39 -0.02 2.12 16 31 H 0.08 2.41 6.49 -2.38 -0.02 2.40 16 32 H 0.08 2.39 8.14 -2.39 -0.02 2.37 16 33 H 0.10 2.32 8.14 -2.39 -0.02 2.30 16 34 H 0.11 1.92 8.14 -2.38 -0.02 1.90 16 35 H 0.10 2.10 7.84 -2.39 -0.02 2.08 16 Total: -1.00 -63.85 262.62 2.04 -61.82 By element: Atomic # 1 Polarization: 10.85 SS G_CDS: 0.95 Total: 11.80 kcal Atomic # 6 Polarization: -42.83 SS G_CDS: 2.94 Total: -39.89 kcal Atomic # 7 Polarization: -77.82 SS G_CDS: -3.70 Total: -81.52 kcal Atomic # 14 Polarization: 45.95 SS G_CDS: 1.85 Total: 47.80 kcal Total: -63.85 2.04 -61.82 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000107226635.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.291 kcal (2) G-P(sol) polarization free energy of solvation -63.854 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.436 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.035 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.819 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.471 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds