Wall clock time and date at job start Mon Mar 30 2020 02:19:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08998 * 109.45707 * 2 1 4 4 C 1.53039 * 109.45874 * 119.97301 * 2 1 3 5 5 H 1.08997 * 109.53965 * 59.23478 * 4 2 1 6 6 C 1.50698 * 109.50388 * 299.13053 * 4 2 1 7 7 H 1.07998 * 119.99868 * 354.69405 * 6 4 2 8 8 C 1.37885 * 119.99912 * 174.68924 * 6 4 2 9 9 N 1.31511 * 119.99871 * 162.91109 * 8 6 4 10 10 Si 1.86795 * 119.99916 * 342.91094 * 8 6 4 11 11 H 1.48499 * 109.47436 * 269.99930 * 10 8 6 12 12 H 1.48499 * 109.47548 * 29.99869 * 10 8 6 13 13 H 1.48496 * 109.47402 * 149.99953 * 10 8 6 14 14 C 1.53121 * 109.27763 * 179.19011 * 4 2 1 15 15 C 1.53124 * 109.16207 * 302.34726 * 14 4 2 16 16 C 1.53042 * 109.27506 * 57.65085 * 15 14 4 17 17 N 1.46837 * 109.52414 * 300.81902 * 16 15 14 18 18 C 1.46898 * 110.99901 * 185.83864 * 17 16 15 19 19 C 1.53000 * 117.50052 * 7.70750 * 18 17 16 20 20 C 1.52995 * 117.50259 * 299.04367 * 18 17 16 21 21 H 1.09003 * 109.46668 * 300.03197 * 1 2 3 22 22 H 1.08999 * 109.46648 * 60.02782 * 1 2 3 23 23 H 1.08993 * 109.47321 * 180.02562 * 1 2 3 24 24 H 0.97006 * 119.99876 * 354.71241 * 9 8 6 25 25 H 1.09001 * 109.52238 * 62.25051 * 14 4 2 26 26 H 1.09001 * 109.52537 * 182.43977 * 14 4 2 27 27 H 1.08999 * 109.50047 * 177.58995 * 15 14 4 28 28 H 1.08989 * 109.50060 * 297.71196 * 15 14 4 29 29 H 1.08997 * 109.46207 * 60.84020 * 16 15 14 30 30 H 1.08998 * 109.45728 * 180.80129 * 16 15 14 31 31 H 1.09006 * 115.55254 * 153.37280 * 18 17 16 32 32 H 1.09003 * 117.49772 * 359.97438 * 19 18 17 33 33 H 1.09003 * 117.50161 * 145.01419 * 19 18 17 34 34 H 1.09002 * 117.50260 * 214.97636 * 20 18 17 35 35 H 1.08998 * 117.49940 * 359.97438 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8931 1.0277 0.0000 4 6 2.0399 -0.7209 1.2500 5 1 1.6659 -1.7447 1.2584 6 6 1.5555 0.0019 2.4804 7 1 1.0180 0.9335 2.3829 8 6 1.7984 -0.5263 3.7307 9 7 1.6884 0.2337 4.7983 10 14 2.2838 -2.3214 3.9080 11 1 1.0625 -3.1509 4.0679 12 1 3.0225 -2.7566 2.6956 13 1 3.1521 -2.4838 5.1016 14 6 3.5709 -0.7362 1.2356 15 6 4.0547 -1.4190 -0.0467 16 6 3.4864 -0.6778 -1.2591 17 7 2.0193 -0.6919 -1.1993 18 6 1.4373 -0.1106 -2.4165 19 6 2.3906 0.2224 -3.5659 20 6 1.7727 1.3482 -2.7329 21 1 -0.3633 0.5144 0.8897 22 1 -0.3632 0.5134 -0.8902 23 1 -0.3633 -1.0276 0.0005 24 1 1.5119 1.1827 4.7020 25 1 3.9457 0.2869 1.2672 26 1 3.9379 -1.2864 2.1021 27 1 5.1439 -1.3949 -0.0831 28 1 3.7124 -2.4537 -0.0594 29 1 3.8403 0.3530 -1.2532 30 1 3.8174 -1.1701 -2.1735 31 1 0.4400 -0.4655 -2.6766 32 1 3.4497 0.0106 -3.4189 33 1 2.0204 0.0869 -4.5822 34 1 0.9963 1.9530 -3.2015 35 1 2.4249 1.8769 -2.0377 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000107226640.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:19:01 Heat of formation + Delta-G solvation = 21.355415 kcal Electronic energy + Delta-G solvation = -14713.441056 eV Core-core repulsion = 12518.791560 eV Total energy + Delta-G solvation = -2194.649496 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 209.148 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -39.45298 -35.98178 -32.80402 -32.01301 -30.44968 -26.66072 -24.70052 -23.08764 -22.31096 -20.50194 -19.85316 -18.37010 -17.49145 -16.11673 -15.16439 -14.42185 -14.06058 -13.51819 -13.39102 -12.82395 -12.63111 -11.99865 -11.74495 -11.59404 -11.36777 -11.11570 -10.96553 -10.73055 -10.55221 -10.31713 -10.07591 -9.89852 -9.63513 -9.54878 -9.14322 -8.64233 -8.18928 -7.71507 -6.37799 -3.99333 3.47546 3.49858 3.65777 3.93673 4.35806 4.57191 5.00331 5.09224 5.10109 5.30876 5.48324 5.58136 5.72826 5.82687 5.88288 5.93950 6.06429 6.18205 6.19211 6.26440 6.29559 6.45622 6.49130 6.66830 6.73692 6.91738 6.96822 7.07284 7.32469 7.52766 7.68986 7.76062 8.27411 8.43846 8.96184 9.67335 10.99988 Molecular weight = 209.15amu Principal moments of inertia in cm(-1) A = 0.044228 B = 0.010674 C = 0.009567 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 632.931596 B = 2622.513840 C = 2926.139756 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.103 3.897 3 H 0.029 0.971 4 C 0.032 3.968 5 H 0.030 0.970 6 C -0.592 4.592 7 H 0.056 0.944 8 C 0.032 3.968 9 N -0.911 5.911 10 Si 1.041 2.959 11 H -0.287 1.287 12 H -0.268 1.268 13 H -0.290 1.290 14 C -0.119 4.119 15 C -0.121 4.121 16 C 0.058 3.942 17 N -0.507 5.507 18 C 0.035 3.965 19 C -0.193 4.193 20 C -0.218 4.218 21 H 0.067 0.933 22 H 0.034 0.966 23 H 0.053 0.947 24 H 0.267 0.733 25 H 0.046 0.954 26 H 0.056 0.944 27 H 0.052 0.948 28 H 0.063 0.937 29 H 0.026 0.974 30 H 0.067 0.933 31 H 0.119 0.881 32 H 0.098 0.902 33 H 0.093 0.907 34 H 0.091 0.909 35 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.012 -1.547 -13.405 13.643 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.003 4.003 3 H 0.047 0.953 4 C 0.012 3.988 5 H 0.048 0.952 6 C -0.630 4.630 7 H 0.074 0.926 8 C -0.172 4.172 9 N -0.545 5.545 10 Si 0.869 3.131 11 H -0.214 1.214 12 H -0.194 1.194 13 H -0.216 1.216 14 C -0.157 4.157 15 C -0.158 4.158 16 C -0.070 4.070 17 N -0.230 5.230 18 C -0.075 4.075 19 C -0.230 4.230 20 C -0.258 4.258 21 H 0.086 0.914 22 H 0.053 0.947 23 H 0.072 0.928 24 H 0.076 0.924 25 H 0.065 0.935 26 H 0.075 0.925 27 H 0.071 0.929 28 H 0.082 0.918 29 H 0.044 0.956 30 H 0.085 0.915 31 H 0.137 0.863 32 H 0.116 0.884 33 H 0.111 0.889 34 H 0.109 0.891 35 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 2.192 -3.218 -12.229 12.834 hybrid contribution -0.040 2.212 -1.209 2.521 sum 2.151 -1.006 -13.438 13.646 Atomic orbital electron populations 1.21715 0.95067 1.01502 1.00438 1.21604 0.94963 0.94947 0.88802 0.95266 1.19086 0.90849 0.96516 0.92316 0.95183 1.21970 1.40105 1.09900 0.91067 0.92617 1.25710 0.94002 1.05395 0.92109 1.70814 1.45183 1.07189 1.31309 0.84140 0.77184 0.75997 0.75785 1.21434 1.19394 1.21609 1.22066 0.99652 0.98938 0.95086 1.21688 0.98354 1.00216 0.95579 1.22122 0.88019 0.98310 0.98525 1.62086 1.06542 1.53503 1.00914 1.22807 0.98753 0.94017 0.91921 1.23313 0.99712 1.03854 0.96145 1.23354 1.04505 0.93565 1.04328 0.91382 0.94713 0.92831 0.92357 0.93475 0.92550 0.92937 0.91813 0.95611 0.91506 0.86317 0.88363 0.88884 0.89064 0.89156 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.54 8.71 37.16 0.32 -2.22 16 2 C 0.10 2.15 1.69 -67.72 -0.11 2.04 16 3 H 0.03 0.65 7.53 -51.93 -0.39 0.26 16 4 C 0.03 0.76 1.33 -91.69 -0.12 0.63 16 5 H 0.03 0.75 6.71 -51.93 -0.35 0.40 16 6 C -0.59 -16.37 8.00 -34.44 -0.28 -16.65 16 7 H 0.06 1.65 7.23 -52.49 -0.38 1.27 16 8 C 0.03 0.93 5.35 -17.82 -0.10 0.83 16 9 N -0.91 -28.02 13.69 55.43 0.76 -27.26 16 10 Si 1.04 25.40 26.31 -169.99 -4.47 20.93 16 11 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 12 H -0.27 -6.05 5.50 56.52 0.31 -5.74 16 13 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 14 C -0.12 -2.63 4.72 -26.60 -0.13 -2.75 16 15 C -0.12 -2.18 6.09 -26.65 -0.16 -2.35 16 16 C 0.06 0.98 4.13 -3.84 -0.02 0.96 16 17 N -0.51 -9.17 4.72 -218.76 -1.03 -10.20 16 18 C 0.03 0.52 4.77 -67.72 -0.32 0.20 16 19 C -0.19 -2.44 9.51 -26.69 -0.25 -2.70 16 20 C -0.22 -3.04 9.50 -26.69 -0.25 -3.29 16 21 H 0.07 1.45 6.79 -51.93 -0.35 1.10 16 22 H 0.03 0.59 6.87 -51.93 -0.36 0.23 16 23 H 0.05 1.04 8.14 -51.93 -0.42 0.61 16 24 H 0.27 8.17 8.73 -40.82 -0.36 7.82 16 25 H 0.05 1.06 8.14 -51.93 -0.42 0.64 16 26 H 0.06 1.28 5.09 -51.93 -0.26 1.02 16 27 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 28 H 0.06 1.17 8.14 -51.94 -0.42 0.75 16 29 H 0.03 0.44 7.33 -51.93 -0.38 0.06 16 30 H 0.07 0.99 6.52 -51.93 -0.34 0.65 16 31 H 0.12 1.70 7.83 -51.93 -0.41 1.30 16 32 H 0.10 1.24 5.82 -51.93 -0.30 0.94 16 33 H 0.09 1.00 8.14 -51.93 -0.42 0.57 16 34 H 0.09 1.13 8.14 -51.93 -0.42 0.71 16 35 H 0.09 1.39 7.24 -51.93 -0.38 1.02 16 LS Contribution 260.76 15.07 3.93 3.93 Total: -1.00 -29.15 260.76 -7.91 -37.06 By element: Atomic # 1 Polarization: 6.51 SS G_CDS: -5.68 Total: 0.83 kcal Atomic # 6 Polarization: -23.87 SS G_CDS: -1.42 Total: -25.29 kcal Atomic # 7 Polarization: -37.19 SS G_CDS: -0.27 Total: -37.47 kcal Atomic # 14 Polarization: 25.40 SS G_CDS: -4.47 Total: 20.93 kcal Total LS contribution 3.93 Total: 3.93 kcal Total: -29.15 -7.91 -37.06 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000107226640.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.415 kcal (2) G-P(sol) polarization free energy of solvation -29.150 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.265 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.909 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.060 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.355 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds