Wall clock time and date at job start Mon Mar 30 2020 02:19:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08998 * 109.45707 * 2 1 4 4 C 1.53039 * 109.45874 * 119.97301 * 2 1 3 5 5 H 1.08997 * 109.53965 * 59.23478 * 4 2 1 6 6 C 1.50698 * 109.50388 * 299.13053 * 4 2 1 7 7 H 1.07998 * 119.99868 * 354.69405 * 6 4 2 8 8 C 1.37885 * 119.99912 * 174.68924 * 6 4 2 9 9 N 1.31511 * 119.99871 * 162.91109 * 8 6 4 10 10 Si 1.86795 * 119.99916 * 342.91094 * 8 6 4 11 11 H 1.48499 * 109.47436 * 269.99930 * 10 8 6 12 12 H 1.48499 * 109.47548 * 29.99869 * 10 8 6 13 13 H 1.48496 * 109.47402 * 149.99953 * 10 8 6 14 14 C 1.53121 * 109.27763 * 179.19011 * 4 2 1 15 15 C 1.53124 * 109.16207 * 302.34726 * 14 4 2 16 16 C 1.53042 * 109.27506 * 57.65085 * 15 14 4 17 17 N 1.46837 * 109.52414 * 300.81902 * 16 15 14 18 18 C 1.46898 * 110.99901 * 185.83864 * 17 16 15 19 19 C 1.53000 * 117.50052 * 7.70750 * 18 17 16 20 20 C 1.52995 * 117.50259 * 299.04367 * 18 17 16 21 21 H 1.09003 * 109.46668 * 300.03197 * 1 2 3 22 22 H 1.08999 * 109.46648 * 60.02782 * 1 2 3 23 23 H 1.08993 * 109.47321 * 180.02562 * 1 2 3 24 24 H 0.97006 * 119.99876 * 354.71241 * 9 8 6 25 25 H 1.09001 * 109.52238 * 62.25051 * 14 4 2 26 26 H 1.09001 * 109.52537 * 182.43977 * 14 4 2 27 27 H 1.08999 * 109.50047 * 177.58995 * 15 14 4 28 28 H 1.08989 * 109.50060 * 297.71196 * 15 14 4 29 29 H 1.08997 * 109.46207 * 60.84020 * 16 15 14 30 30 H 1.08998 * 109.45728 * 180.80129 * 16 15 14 31 31 H 1.09006 * 115.55254 * 153.37280 * 18 17 16 32 32 H 1.09003 * 117.49772 * 359.97438 * 19 18 17 33 33 H 1.09003 * 117.50161 * 145.01419 * 19 18 17 34 34 H 1.09002 * 117.50260 * 214.97636 * 20 18 17 35 35 H 1.08998 * 117.49940 * 359.97438 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8931 1.0277 0.0000 4 6 2.0399 -0.7209 1.2500 5 1 1.6659 -1.7447 1.2584 6 6 1.5555 0.0019 2.4804 7 1 1.0180 0.9335 2.3829 8 6 1.7984 -0.5263 3.7307 9 7 1.6884 0.2337 4.7983 10 14 2.2838 -2.3214 3.9080 11 1 1.0625 -3.1509 4.0679 12 1 3.0225 -2.7566 2.6956 13 1 3.1521 -2.4838 5.1016 14 6 3.5709 -0.7362 1.2356 15 6 4.0547 -1.4190 -0.0467 16 6 3.4864 -0.6778 -1.2591 17 7 2.0193 -0.6919 -1.1993 18 6 1.4373 -0.1106 -2.4165 19 6 2.3906 0.2224 -3.5659 20 6 1.7727 1.3482 -2.7329 21 1 -0.3633 0.5144 0.8897 22 1 -0.3632 0.5134 -0.8902 23 1 -0.3633 -1.0276 0.0005 24 1 1.5119 1.1827 4.7020 25 1 3.9457 0.2869 1.2672 26 1 3.9379 -1.2864 2.1021 27 1 5.1439 -1.3949 -0.0831 28 1 3.7124 -2.4537 -0.0594 29 1 3.8403 0.3530 -1.2532 30 1 3.8174 -1.1701 -2.1735 31 1 0.4400 -0.4655 -2.6766 32 1 3.4497 0.0106 -3.4189 33 1 2.0204 0.0869 -4.5822 34 1 0.9963 1.9530 -3.2015 35 1 2.4249 1.8769 -2.0377 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000107226640.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:19:01 Heat of formation + Delta-G solvation = 2.417051 kcal Electronic energy + Delta-G solvation = -14714.262285 eV Core-core repulsion = 12518.791560 eV Total energy + Delta-G solvation = -2195.470725 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 209.148 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.85479 -37.45054 -34.77101 -33.59588 -32.15107 -28.34205 -26.40740 -24.71790 -23.47805 -22.00340 -21.43713 -19.99545 -19.55640 -17.40779 -16.55338 -15.89394 -15.82709 -15.24156 -14.94124 -14.34859 -14.25018 -13.97678 -13.21195 -12.95662 -12.90408 -12.78250 -12.54823 -12.41944 -11.96245 -11.81547 -11.68880 -11.40845 -11.33465 -11.09570 -10.85170 -10.63168 -10.39038 -9.11592 -8.68464 -6.29722 1.49411 1.53622 1.73375 2.52909 2.76850 3.07667 3.11796 3.83791 4.01281 4.01558 4.09840 4.17913 4.21811 4.37821 4.55266 4.61258 4.69397 4.74590 4.83293 4.84973 4.99838 5.06846 5.10681 5.16592 5.19604 5.26517 5.29352 5.37712 5.52168 5.77955 5.96646 6.09510 6.33138 6.36147 6.64179 7.45091 8.68150 Molecular weight = 209.15amu Principal moments of inertia in cm(-1) A = 0.044228 B = 0.010674 C = 0.009567 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 632.931596 B = 2622.513840 C = 2926.139756 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C 0.112 3.888 3 H 0.006 0.994 4 C 0.029 3.971 5 H 0.027 0.973 6 C -0.587 4.587 7 H 0.018 0.982 8 C -0.021 4.021 9 N -0.945 5.945 10 Si 1.080 2.920 11 H -0.277 1.277 12 H -0.237 1.237 13 H -0.291 1.291 14 C -0.120 4.120 15 C -0.115 4.115 16 C 0.058 3.942 17 N -0.512 5.512 18 C 0.011 3.989 19 C -0.166 4.166 20 C -0.223 4.223 21 H 0.037 0.963 22 H 0.061 0.939 23 H 0.056 0.944 24 H 0.251 0.749 25 H 0.030 0.970 26 H 0.046 0.954 27 H 0.080 0.920 28 H 0.067 0.933 29 H 0.021 0.979 30 H 0.099 0.901 31 H 0.129 0.871 32 H 0.102 0.898 33 H 0.121 0.879 34 H 0.107 0.893 35 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.853 -3.270 -16.300 16.868 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.004 3.996 3 H 0.024 0.976 4 C 0.009 3.991 5 H 0.045 0.955 6 C -0.626 4.626 7 H 0.036 0.964 8 C -0.218 4.218 9 N -0.582 5.582 10 Si 0.902 3.098 11 H -0.203 1.203 12 H -0.160 1.160 13 H -0.217 1.217 14 C -0.158 4.158 15 C -0.153 4.153 16 C -0.070 4.070 17 N -0.235 5.235 18 C -0.098 4.098 19 C -0.203 4.203 20 C -0.262 4.262 21 H 0.056 0.944 22 H 0.080 0.920 23 H 0.075 0.925 24 H 0.059 0.941 25 H 0.049 0.951 26 H 0.065 0.935 27 H 0.099 0.901 28 H 0.086 0.914 29 H 0.039 0.961 30 H 0.117 0.883 31 H 0.147 0.853 32 H 0.120 0.880 33 H 0.139 0.861 34 H 0.125 0.875 35 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 3.030 -4.930 -15.163 16.229 hybrid contribution -0.342 2.862 -0.359 2.905 sum 2.689 -2.068 -15.521 15.888 Atomic orbital electron populations 1.21613 0.94502 1.01572 1.00305 1.21307 0.95426 0.93441 0.89419 0.97646 1.19045 0.92301 0.95786 0.91947 0.95501 1.22177 1.38713 1.08495 0.93177 0.96360 1.27098 0.93794 1.08892 0.91992 1.70944 1.48280 1.06535 1.32416 0.83667 0.77712 0.71455 0.76994 1.20270 1.16044 1.21715 1.21961 0.98024 0.98506 0.97336 1.21656 1.00176 0.99838 0.93596 1.22207 0.87241 0.98254 0.99289 1.62003 1.07406 1.53251 1.00846 1.22929 1.00079 0.94972 0.91784 1.23416 0.99386 1.00995 0.96474 1.23342 1.04938 0.93271 1.04628 0.94360 0.91986 0.92531 0.94066 0.95114 0.93495 0.90121 0.91404 0.96116 0.88298 0.85345 0.87964 0.86119 0.87479 0.91257 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.77 8.71 71.98 0.63 -4.14 16 2 C 0.11 4.61 1.69 44.94 0.08 4.69 16 3 H 0.01 0.25 7.53 -2.39 -0.02 0.24 16 4 C 0.03 1.36 1.33 -11.49 -0.02 1.34 16 5 H 0.03 1.30 6.71 -2.39 -0.02 1.28 16 6 C -0.59 -33.63 8.00 25.60 0.20 -33.43 16 7 H 0.02 1.15 7.23 -2.91 -0.02 1.13 16 8 C -0.02 -1.22 5.35 84.66 0.45 -0.76 16 9 N -0.95 -60.45 13.69 21.45 0.29 -60.16 16 10 Si 1.08 51.14 26.31 68.60 1.80 52.94 16 11 H -0.28 -12.56 7.11 99.48 0.71 -11.85 16 12 H -0.24 -9.92 5.50 99.48 0.55 -9.38 16 13 H -0.29 -13.79 7.11 99.48 0.71 -13.08 16 14 C -0.12 -5.18 4.72 30.68 0.14 -5.03 16 15 C -0.11 -3.80 6.09 30.65 0.19 -3.62 16 16 C 0.06 1.75 4.13 86.33 0.36 2.11 16 17 N -0.51 -17.25 4.72 -846.04 -3.99 -21.25 16 18 C 0.01 0.30 4.77 44.91 0.21 0.52 16 19 C -0.17 -3.46 9.51 30.62 0.29 -3.17 16 20 C -0.22 -5.62 9.50 30.62 0.29 -5.33 16 21 H 0.04 1.68 6.79 -2.39 -0.02 1.67 16 22 H 0.06 2.03 6.87 -2.39 -0.02 2.02 16 23 H 0.06 2.14 8.14 -2.39 -0.02 2.12 16 24 H 0.25 16.27 8.73 -92.70 -0.81 15.46 16 25 H 0.03 1.38 8.14 -2.39 -0.02 1.36 16 26 H 0.05 2.07 5.09 -2.39 -0.01 2.06 16 27 H 0.08 2.23 8.14 -2.39 -0.02 2.22 16 28 H 0.07 2.22 8.14 -2.39 -0.02 2.20 16 29 H 0.02 0.66 7.33 -2.39 -0.02 0.64 16 30 H 0.10 2.43 6.52 -2.39 -0.02 2.42 16 31 H 0.13 3.22 7.83 -2.38 -0.02 3.20 16 32 H 0.10 2.09 5.82 -2.39 -0.01 2.07 16 33 H 0.12 1.92 8.14 -2.39 -0.02 1.90 16 34 H 0.11 2.34 8.14 -2.39 -0.02 2.32 16 35 H 0.07 2.06 7.24 -2.39 -0.02 2.04 16 Total: -1.00 -65.04 260.76 1.79 -63.25 By element: Atomic # 1 Polarization: 11.19 SS G_CDS: 0.85 Total: 12.04 kcal Atomic # 6 Polarization: -49.66 SS G_CDS: 2.83 Total: -46.83 kcal Atomic # 7 Polarization: -77.71 SS G_CDS: -3.70 Total: -81.40 kcal Atomic # 14 Polarization: 51.14 SS G_CDS: 1.80 Total: 52.94 kcal Total: -65.04 1.79 -63.25 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000107226640.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.670 kcal (2) G-P(sol) polarization free energy of solvation -65.040 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.630 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.787 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.253 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.417 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds