Wall clock time and date at job start Mon Mar 30 2020 02:19:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09000 * 109.44929 * 2 1 4 4 C 1.53036 * 109.45931 * 240.03292 * 2 1 3 5 5 H 1.09003 * 109.50356 * 300.73748 * 4 2 1 6 6 C 1.50697 * 109.50874 * 60.82111 * 4 2 1 7 7 H 1.08004 * 119.99682 * 5.37497 * 6 4 2 8 8 C 1.37875 * 120.00577 * 185.38269 * 6 4 2 9 9 N 1.31524 * 119.99613 * 9.28404 * 8 6 4 10 10 Si 1.86797 * 120.00592 * 189.28374 * 8 6 4 11 11 H 1.48498 * 109.46870 * 94.98799 * 10 8 6 12 12 H 1.48495 * 109.47329 * 214.99053 * 10 8 6 13 13 H 1.48500 * 109.46880 * 334.99277 * 10 8 6 14 14 C 1.53119 * 109.30900 * 180.78280 * 4 2 1 15 15 C 1.53119 * 109.16196 * 57.67349 * 14 4 2 16 16 C 1.53037 * 109.27760 * 302.34133 * 15 14 4 17 17 N 1.46852 * 109.51869 * 59.17938 * 16 15 14 18 18 C 1.46906 * 110.99676 * 174.15847 * 17 16 15 19 19 C 1.52997 * 117.49971 * 14.97477 * 18 17 16 20 20 C 1.52997 * 117.49962 * 306.34805 * 18 17 16 21 21 H 1.09005 * 109.47038 * 188.54787 * 1 2 3 22 22 H 1.09007 * 109.46983 * 308.54350 * 1 2 3 23 23 H 1.08996 * 109.47873 * 68.54659 * 1 2 3 24 24 H 0.96998 * 119.99862 * 180.02562 * 9 8 6 25 25 H 1.09005 * 109.52014 * 177.57445 * 14 4 2 26 26 H 1.08997 * 109.52154 * 297.76481 * 14 4 2 27 27 H 1.08995 * 109.50818 * 62.28612 * 15 14 4 28 28 H 1.09001 * 109.50670 * 182.40751 * 15 14 4 29 29 H 1.09000 * 109.46689 * 179.19282 * 16 15 14 30 30 H 1.08997 * 109.46714 * 299.17255 * 16 15 14 31 31 H 1.09001 * 115.54563 * 160.68221 * 18 17 16 32 32 H 1.08998 * 117.49747 * 359.97438 * 19 18 17 33 33 H 1.09003 * 117.49843 * 145.02012 * 19 18 17 34 34 H 1.09006 * 117.49934 * 214.97670 * 20 18 17 35 35 H 1.08998 * 117.50141 * 0.02562 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8929 1.0278 0.0000 4 6 2.0398 -0.7208 -1.2500 5 1 1.6659 -1.7446 -1.2577 6 6 1.5545 0.0014 -2.4805 7 1 1.0173 0.9333 -2.3830 8 6 1.7960 -0.5275 -3.7306 9 7 2.2842 -1.7432 -3.8471 10 14 1.4298 0.4823 -5.2588 11 1 2.6661 1.1750 -5.7023 12 1 0.9492 -0.4139 -6.3409 13 1 0.3829 1.4886 -4.9480 14 6 3.5709 -0.7359 -1.2367 15 6 4.0556 -1.4190 0.0450 16 6 3.4882 -0.6782 1.2580 17 7 2.0209 -0.6923 1.1993 18 6 1.4398 -0.1115 2.4171 19 6 2.3673 0.6973 3.3262 20 6 1.8898 -0.6901 3.7600 21 1 -0.3633 -1.0163 0.1528 22 1 -0.3633 0.6404 0.8038 23 1 -0.3635 0.3758 -0.9564 24 1 2.4545 -2.1152 -4.7266 25 1 3.9372 -1.2859 -2.1036 26 1 3.9455 0.2872 -1.2683 27 1 3.7134 -2.4538 0.0577 28 1 5.1448 -1.3949 0.0808 29 1 3.8198 -1.1707 2.1721 30 1 3.8419 0.3527 1.2521 31 1 0.4043 0.2182 2.3327 32 1 3.4088 0.7980 3.0209 33 1 1.9421 1.5593 3.8401 34 1 1.1505 -0.7407 4.5594 35 1 2.6174 -1.5015 3.7400 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000107226643.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:19:04 Heat of formation + Delta-G solvation = 19.825764 kcal Electronic energy + Delta-G solvation = -14570.691751 eV Core-core repulsion = 12375.975924 eV Total energy + Delta-G solvation = -2194.715827 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 209.148 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -39.16527 -35.86781 -32.72397 -31.99246 -30.02859 -26.43163 -24.85270 -23.18680 -22.15521 -20.60709 -19.77052 -18.32437 -16.56573 -15.74026 -15.19948 -14.40712 -13.82564 -13.37157 -13.15927 -12.85914 -12.50120 -11.77682 -11.60552 -11.36233 -11.25154 -10.99237 -10.92226 -10.71756 -10.57033 -10.38861 -10.10570 -9.98761 -9.79142 -9.44255 -8.83375 -8.69156 -8.27576 -7.46992 -5.98216 -3.98967 3.31989 3.39618 3.41967 4.05943 4.42245 4.57137 5.14618 5.20147 5.30905 5.34100 5.59375 5.80398 5.83721 5.94568 5.98846 6.11408 6.15847 6.30140 6.31873 6.35615 6.44006 6.64728 6.73318 6.79492 6.94459 7.14144 7.24321 7.34282 7.71708 7.77277 7.85586 8.02506 8.15531 8.50533 9.04528 9.63243 11.11034 Molecular weight = 209.15amu Principal moments of inertia in cm(-1) A = 0.049390 B = 0.009225 C = 0.008356 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 566.775820 B = 3034.414519 C = 3350.111438 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.093 3.907 3 H 0.026 0.974 4 C 0.059 3.941 5 H 0.042 0.958 6 C -0.512 4.512 7 H 0.055 0.945 8 C 0.065 3.935 9 N -0.886 5.886 10 Si 0.885 3.115 11 H -0.282 1.282 12 H -0.288 1.288 13 H -0.275 1.275 14 C -0.107 4.107 15 C -0.119 4.119 16 C 0.060 3.940 17 N -0.502 5.502 18 C 0.029 3.971 19 C -0.229 4.229 20 C -0.179 4.179 21 H 0.054 0.946 22 H 0.030 0.970 23 H 0.073 0.927 24 H 0.259 0.741 25 H 0.073 0.927 26 H 0.032 0.968 27 H 0.062 0.938 28 H 0.047 0.953 29 H 0.059 0.941 30 H 0.027 0.973 31 H 0.120 0.880 32 H 0.095 0.905 33 H 0.086 0.914 34 H 0.090 0.910 35 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.452 2.608 10.194 10.533 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.014 4.014 3 H 0.044 0.956 4 C 0.040 3.960 5 H 0.060 0.940 6 C -0.551 4.551 7 H 0.073 0.927 8 C -0.137 4.137 9 N -0.524 5.524 10 Si 0.713 3.287 11 H -0.208 1.208 12 H -0.214 1.214 13 H -0.199 1.199 14 C -0.145 4.145 15 C -0.156 4.156 16 C -0.068 4.068 17 N -0.225 5.225 18 C -0.081 4.081 19 C -0.269 4.269 20 C -0.217 4.217 21 H 0.073 0.927 22 H 0.049 0.951 23 H 0.092 0.908 24 H 0.069 0.931 25 H 0.092 0.908 26 H 0.051 0.949 27 H 0.081 0.919 28 H 0.065 0.935 29 H 0.078 0.922 30 H 0.046 0.954 31 H 0.138 0.862 32 H 0.113 0.887 33 H 0.105 0.895 34 H 0.109 0.891 35 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 0.350 1.972 9.988 10.187 hybrid contribution 0.217 1.372 -0.742 1.575 sum 0.567 3.344 9.246 9.848 Atomic orbital electron populations 1.21836 0.95433 1.00938 1.01009 1.21808 0.94691 0.95064 0.89832 0.95573 1.18708 0.90993 0.96928 0.89364 0.93995 1.21120 1.36037 1.07334 0.90568 0.92652 1.24930 0.95405 0.94579 0.98802 1.69982 1.45184 1.13874 1.23399 0.86696 0.78425 0.80314 0.83270 1.20846 1.21355 1.19939 1.21620 0.99568 0.97950 0.95384 1.21685 0.97900 1.00290 0.95767 1.22109 0.87823 0.98275 0.98580 1.61947 1.06596 1.53121 1.00803 1.22829 0.98196 0.99554 0.87551 1.23504 1.01486 0.94924 1.06967 1.23008 1.03917 0.96438 0.98363 0.92687 0.95132 0.90847 0.93116 0.90799 0.94893 0.91928 0.93454 0.92234 0.95440 0.86215 0.88661 0.89520 0.89120 0.88914 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.64 8.56 37.16 0.32 -2.32 16 2 C 0.09 1.97 1.92 -67.68 -0.13 1.84 16 3 H 0.03 0.58 8.14 -51.93 -0.42 0.16 16 4 C 0.06 1.46 1.65 -91.69 -0.15 1.31 16 5 H 0.04 1.18 8.09 -51.93 -0.42 0.76 16 6 C -0.51 -13.81 7.52 -34.44 -0.26 -14.07 16 7 H 0.06 1.48 7.05 -52.48 -0.37 1.11 16 8 C 0.06 1.78 5.23 -17.82 -0.09 1.68 16 9 N -0.89 -25.41 12.17 55.43 0.67 -24.74 16 10 Si 0.88 21.19 29.55 -169.99 -5.02 16.17 16 11 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 12 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 13 H -0.27 -6.48 7.11 56.52 0.40 -6.07 16 14 C -0.11 -2.52 5.09 -26.61 -0.14 -2.65 16 15 C -0.12 -2.33 6.09 -26.65 -0.16 -2.49 16 16 C 0.06 1.07 4.14 -3.83 -0.02 1.06 16 17 N -0.50 -9.54 4.72 -218.70 -1.03 -10.58 16 18 C 0.03 0.46 5.79 -67.71 -0.39 0.07 16 19 C -0.23 -3.18 9.61 -26.73 -0.26 -3.43 16 20 C -0.18 -2.42 9.92 -26.73 -0.27 -2.69 16 21 H 0.05 1.08 8.14 -51.93 -0.42 0.66 16 22 H 0.03 0.51 6.44 -51.93 -0.33 0.17 16 23 H 0.07 1.53 6.56 -51.93 -0.34 1.19 16 24 H 0.26 7.10 8.31 -40.82 -0.34 6.76 16 25 H 0.07 1.92 6.97 -51.93 -0.36 1.56 16 26 H 0.03 0.77 8.14 -51.93 -0.42 0.34 16 27 H 0.06 1.28 8.14 -51.93 -0.42 0.86 16 28 H 0.05 0.83 8.14 -51.93 -0.42 0.40 16 29 H 0.06 0.96 6.39 -51.93 -0.33 0.63 16 30 H 0.03 0.50 7.03 -51.93 -0.36 0.13 16 31 H 0.12 1.85 5.90 -51.93 -0.31 1.54 16 32 H 0.10 1.36 6.00 -51.93 -0.31 1.05 16 33 H 0.09 1.07 8.14 -51.93 -0.42 0.65 16 34 H 0.09 1.05 8.14 -51.93 -0.42 0.63 16 35 H 0.09 1.27 7.10 -51.93 -0.37 0.91 16 LS Contribution 266.11 15.07 4.01 4.01 Total: -1.00 -27.69 266.11 -8.52 -36.21 By element: Atomic # 1 Polarization: 6.22 SS G_CDS: -5.60 Total: 0.62 kcal Atomic # 6 Polarization: -20.15 SS G_CDS: -1.54 Total: -21.69 kcal Atomic # 7 Polarization: -34.96 SS G_CDS: -0.36 Total: -35.31 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -5.02 Total: 16.17 kcal Total LS contribution 4.01 Total: 4.01 kcal Total: -27.69 -8.52 -36.21 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000107226643.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.034 kcal (2) G-P(sol) polarization free energy of solvation -27.691 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.343 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.517 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.208 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.826 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds