Wall clock time and date at job start Mon Mar 30 2020 02:19:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08991 * 109.45610 * 2 1 4 4 C 1.53045 * 109.46322 * 119.97587 * 2 1 3 5 5 H 1.08994 * 109.53847 * 180.79653 * 4 2 1 6 6 C 1.50701 * 109.49931 * 300.89359 * 4 2 1 7 7 H 1.08003 * 120.00411 * 359.80670 * 6 4 2 8 8 C 1.37882 * 119.99948 * 179.80225 * 6 4 2 9 9 N 1.31513 * 119.99584 * 0.02562 * 8 6 4 10 10 Si 1.86797 * 119.99893 * 180.02562 * 8 6 4 11 11 H 1.48498 * 109.47161 * 59.99997 * 10 8 6 12 12 H 1.48500 * 109.47046 * 179.97438 * 10 8 6 13 13 H 1.48498 * 109.47160 * 299.99768 * 10 8 6 14 14 C 1.53121 * 109.27729 * 60.83289 * 4 2 1 15 15 C 1.53108 * 109.16047 * 57.66016 * 14 4 2 16 16 C 1.53042 * 109.27733 * 302.34182 * 15 14 4 17 17 N 1.46838 * 109.52506 * 59.18349 * 16 15 14 18 18 C 1.46898 * 111.00308 * 174.16151 * 17 16 15 19 19 C 1.52999 * 117.49962 * 247.40832 * 18 17 16 20 20 C 1.52997 * 117.49902 * 178.78427 * 18 17 16 21 21 H 1.08998 * 109.46710 * 185.41231 * 1 2 3 22 22 H 1.08998 * 109.46682 * 305.41236 * 1 2 3 23 23 H 1.08999 * 109.46876 * 65.41312 * 1 2 3 24 24 H 0.97003 * 119.99404 * 180.02562 * 9 8 6 25 25 H 1.08994 * 109.52471 * 297.74784 * 14 4 2 26 26 H 1.09002 * 109.57062 * 177.59629 * 14 4 2 27 27 H 1.09001 * 109.50397 * 182.40504 * 15 14 4 28 28 H 1.09001 * 109.54301 * 62.30109 * 15 14 4 29 29 H 1.08995 * 109.46004 * 299.16162 * 16 15 14 30 30 H 1.09007 * 109.46317 * 179.20044 * 16 15 14 31 31 H 1.09000 * 115.55062 * 33.11395 * 18 17 16 32 32 H 1.09002 * 117.49873 * 0.02562 * 19 18 17 33 33 H 1.08996 * 117.50130 * 145.02044 * 19 18 17 34 34 H 1.08999 * 117.49934 * 214.97562 * 20 18 17 35 35 H 1.08999 * 117.50162 * 359.97438 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8931 1.0277 0.0000 4 6 2.0400 -0.7210 1.2500 5 1 3.1298 -0.7093 1.2584 6 6 1.5199 -0.0234 2.4804 7 1 0.8911 0.8492 2.3814 8 6 1.8466 -0.4992 3.7326 9 7 2.6126 -1.5614 3.8531 10 14 1.2014 0.3651 5.2577 11 1 -0.2835 0.3499 5.2444 12 1 1.6922 -0.3381 6.4701 13 1 1.6820 1.7701 5.2712 14 6 1.5443 -2.1696 1.2356 15 6 2.0269 -2.8532 -0.0466 16 6 1.5174 -2.0705 -1.2590 17 7 2.0193 -0.6918 -1.1994 18 6 1.6652 0.0505 -2.4165 19 6 2.8056 0.4637 -3.3490 20 6 2.0926 1.5172 -2.4989 21 1 -0.3633 -1.0231 0.0969 22 1 -0.3632 0.5955 0.8376 23 1 -0.3633 0.4276 -0.9345 24 1 2.8421 -1.8963 4.7341 25 1 0.4549 -2.1822 1.2673 26 1 1.9399 -2.6996 2.1020 27 1 1.6414 -3.8721 -0.0831 28 1 3.1166 -2.8757 -0.0598 29 1 0.4275 -2.0608 -1.2531 30 1 1.8712 -2.5466 -2.1736 31 1 0.7145 -0.2231 -2.8742 32 1 3.8187 0.1843 -3.0596 33 1 2.6055 0.4619 -4.4204 34 1 1.4234 2.2085 -3.0112 35 1 2.6362 1.9316 -1.6499 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000107226647.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:19:06 Heat of formation + Delta-G solvation = 4.123904 kcal Electronic energy + Delta-G solvation = -14652.775648 eV Core-core repulsion = 12457.378938 eV Total energy + Delta-G solvation = -2195.396710 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 209.148 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.59679 -37.36017 -34.84054 -32.76748 -32.03045 -28.31878 -26.62802 -24.43471 -23.52204 -22.57171 -21.50872 -19.23236 -18.31085 -17.32744 -16.60686 -16.07582 -15.67045 -15.16299 -14.62520 -14.37308 -13.94576 -13.75049 -13.23299 -13.00983 -12.87672 -12.68257 -12.52191 -12.36196 -12.22762 -11.85892 -11.62252 -11.50329 -11.09724 -10.90163 -10.65908 -10.56125 -10.31089 -8.97168 -8.04560 -6.17218 1.41912 1.42824 1.50210 2.44047 2.93552 3.10915 3.22406 4.08663 4.12950 4.18509 4.25569 4.36811 4.42868 4.57400 4.63394 4.72709 4.78851 4.84732 4.90503 5.02773 5.11612 5.13257 5.19787 5.33140 5.33730 5.39458 5.49784 5.58366 5.68378 6.01908 6.19154 6.27574 6.51510 6.53428 6.95043 7.49771 9.00045 Molecular weight = 209.15amu Principal moments of inertia in cm(-1) A = 0.041785 B = 0.009836 C = 0.008795 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 669.943747 B = 2845.927007 C = 3182.732118 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.101 3.899 3 H 0.055 0.945 4 C 0.060 3.940 5 H -0.014 1.014 6 C -0.524 4.524 7 H 0.055 0.945 8 C 0.011 3.989 9 N -0.918 5.918 10 Si 0.950 3.050 11 H -0.271 1.271 12 H -0.286 1.286 13 H -0.273 1.273 14 C -0.104 4.104 15 C -0.112 4.112 16 C 0.068 3.932 17 N -0.522 5.522 18 C -0.006 4.006 19 C -0.154 4.154 20 C -0.176 4.176 21 H 0.050 0.950 22 H 0.049 0.951 23 H 0.055 0.945 24 H 0.258 0.742 25 H 0.031 0.969 26 H 0.054 0.946 27 H 0.069 0.931 28 H 0.045 0.955 29 H 0.035 0.965 30 H 0.082 0.918 31 H 0.095 0.905 32 H 0.085 0.915 33 H 0.117 0.883 34 H 0.113 0.887 35 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.306 1.713 -11.684 12.263 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.006 4.006 3 H 0.073 0.927 4 C 0.041 3.959 5 H 0.004 0.996 6 C -0.563 4.563 7 H 0.073 0.927 8 C -0.187 4.187 9 N -0.557 5.557 10 Si 0.776 3.224 11 H -0.197 1.197 12 H -0.212 1.212 13 H -0.198 1.198 14 C -0.142 4.142 15 C -0.150 4.150 16 C -0.059 4.059 17 N -0.245 5.245 18 C -0.115 4.115 19 C -0.191 4.191 20 C -0.214 4.214 21 H 0.069 0.931 22 H 0.068 0.932 23 H 0.074 0.926 24 H 0.067 0.933 25 H 0.050 0.950 26 H 0.073 0.927 27 H 0.087 0.913 28 H 0.064 0.936 29 H 0.053 0.947 30 H 0.100 0.900 31 H 0.113 0.887 32 H 0.103 0.897 33 H 0.135 0.865 34 H 0.131 0.869 35 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -2.710 1.573 -11.520 11.938 hybrid contribution -0.885 0.315 1.308 1.610 sum -3.595 1.888 -10.212 10.990 Atomic orbital electron populations 1.22208 0.97304 1.01393 1.00580 1.21536 0.92997 0.96560 0.89526 0.92654 1.18568 0.93717 0.92586 0.91037 0.99579 1.21493 1.30657 1.12411 0.91724 0.92720 1.25715 0.95441 0.95751 1.01781 1.70044 1.37691 1.24326 1.23677 0.85733 0.78811 0.78758 0.79070 1.19653 1.21173 1.19803 1.21478 0.97784 0.98285 0.96631 1.21601 1.00063 0.98328 0.95025 1.21988 0.97215 0.88450 0.98283 1.61913 1.59435 1.02170 1.01011 1.22465 0.97921 0.96639 0.94437 1.23086 0.97004 1.01790 0.97251 1.23041 1.04261 0.91373 1.02708 0.93140 0.93224 0.92644 0.93255 0.95022 0.92746 0.91264 0.93626 0.94664 0.89993 0.88714 0.89651 0.86530 0.86906 0.90304 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.97 7.93 71.98 0.57 -5.40 16 2 C 0.10 4.28 2.29 44.94 0.10 4.39 16 3 H 0.06 2.43 6.61 -2.39 -0.02 2.41 16 4 C 0.06 3.07 2.05 -11.48 -0.02 3.05 16 5 H -0.01 -0.83 8.14 -2.39 -0.02 -0.85 16 6 C -0.52 -29.04 7.89 25.60 0.20 -28.84 16 7 H 0.05 2.95 6.67 -2.91 -0.02 2.93 16 8 C 0.01 0.64 5.30 84.66 0.45 1.09 16 9 N -0.92 -54.10 11.35 21.45 0.24 -53.86 16 10 Si 0.95 44.18 29.54 68.60 2.03 46.20 16 11 H -0.27 -12.21 7.11 99.48 0.71 -11.51 16 12 H -0.29 -13.12 7.11 99.48 0.71 -12.41 16 13 H -0.27 -12.36 7.11 99.48 0.71 -11.66 16 14 C -0.10 -5.01 4.72 30.67 0.14 -4.87 16 15 C -0.11 -4.42 6.09 30.64 0.19 -4.23 16 16 C 0.07 2.33 5.12 86.33 0.44 2.77 16 17 N -0.52 -19.12 4.75 -846.02 -4.02 -23.14 16 18 C -0.01 -0.17 4.17 44.91 0.19 0.01 16 19 C -0.15 -3.76 10.46 30.59 0.32 -3.44 16 20 C -0.18 -4.66 9.69 30.59 0.30 -4.37 16 21 H 0.05 1.96 4.83 -2.39 -0.01 1.94 16 22 H 0.05 2.01 6.76 -2.39 -0.02 1.99 16 23 H 0.05 1.80 7.16 -2.39 -0.02 1.78 16 24 H 0.26 14.57 8.31 -92.71 -0.77 13.80 16 25 H 0.03 1.51 6.44 -2.39 -0.02 1.49 16 26 H 0.05 3.00 6.15 -2.39 -0.01 2.99 16 27 H 0.07 2.37 8.14 -2.39 -0.02 2.35 16 28 H 0.04 1.90 8.14 -2.39 -0.02 1.88 16 29 H 0.04 1.17 6.31 -2.39 -0.02 1.15 16 30 H 0.08 2.40 8.12 -2.38 -0.02 2.38 16 31 H 0.10 2.50 7.99 -2.39 -0.02 2.48 16 32 H 0.08 2.32 8.14 -2.39 -0.02 2.30 16 33 H 0.12 2.17 8.14 -2.39 -0.02 2.15 16 34 H 0.11 2.41 8.14 -2.39 -0.02 2.39 16 35 H 0.08 2.43 7.15 -2.39 -0.02 2.41 16 Total: -1.00 -60.40 264.05 2.18 -58.22 By element: Atomic # 1 Polarization: 11.36 SS G_CDS: 1.05 Total: 12.41 kcal Atomic # 6 Polarization: -42.71 SS G_CDS: 2.88 Total: -39.83 kcal Atomic # 7 Polarization: -73.22 SS G_CDS: -3.78 Total: -77.00 kcal Atomic # 14 Polarization: 44.18 SS G_CDS: 2.03 Total: 46.20 kcal Total: -60.40 2.18 -58.22 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000107226647.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.339 kcal (2) G-P(sol) polarization free energy of solvation -60.395 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.944 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.180 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.215 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.124 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds