Wall clock time and date at job start Mon Mar 30 2020 02:23:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31004 * 1 3 3 C 1.50701 * 119.99657 * 2 1 4 4 C 1.53006 * 109.46969 * 124.73282 * 3 2 1 5 5 H 1.09001 * 109.46830 * 304.99756 * 4 3 2 6 6 C 1.53000 * 109.47136 * 185.00092 * 4 3 2 7 7 N 1.46895 * 109.47009 * 64.99749 * 4 3 2 8 8 C 1.46909 * 110.99805 * 205.00223 * 7 4 3 9 9 C 1.53001 * 109.47215 * 174.68974 * 8 7 4 10 10 C 1.50704 * 115.54865 * 39.57501 * 9 8 7 11 11 H 1.07997 * 119.99722 * 265.25955 * 10 9 8 12 12 C 1.37875 * 119.99800 * 85.25719 * 10 9 8 13 13 N 1.31514 * 120.00593 * 353.34053 * 12 10 9 14 14 Si 1.86808 * 119.99571 * 173.33579 * 12 10 9 15 15 H 1.48500 * 109.47062 * 90.00389 * 14 12 10 16 16 H 1.48500 * 109.46753 * 210.00372 * 14 12 10 17 17 H 1.48494 * 109.47293 * 330.00459 * 14 12 10 18 18 C 1.52989 * 117.49933 * 253.86596 * 9 8 7 19 19 C 1.52994 * 117.49712 * 185.24184 * 9 8 7 20 20 H 1.08000 * 119.99908 * 180.27512 * 1 2 3 21 21 H 1.07997 * 120.00048 * 0.26759 * 1 2 3 22 22 H 1.07997 * 120.00048 * 179.73241 * 2 1 3 23 23 H 1.09004 * 109.46853 * 244.72671 * 3 2 1 24 24 H 1.08993 * 109.47661 * 4.73115 * 3 2 1 25 25 H 1.09001 * 109.46987 * 299.99568 * 6 4 3 26 26 H 1.08995 * 109.47201 * 59.99151 * 6 4 3 27 27 H 1.08993 * 109.46973 * 179.97438 * 6 4 3 28 28 H 1.00899 * 111.00305 * 81.05188 * 7 4 3 29 29 H 1.08996 * 109.46878 * 294.69033 * 8 7 4 30 30 H 1.08998 * 109.46919 * 54.69155 * 8 7 4 31 31 H 0.96998 * 119.99993 * 185.05964 * 13 12 10 32 32 H 1.09002 * 117.50130 * 359.97438 * 18 9 8 33 33 H 1.09002 * 117.50051 * 145.02571 * 18 9 8 34 34 H 1.09005 * 117.49854 * 214.97786 * 19 9 8 35 35 H 1.08998 * 117.50207 * 359.97438 * 19 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3052 0.0000 4 6 3.0302 1.3359 1.1855 5 1 2.4797 1.1519 2.1081 6 6 3.7040 2.7076 1.2587 7 7 4.0533 0.2965 1.0101 8 6 4.6113 -0.1167 2.3047 9 6 5.5732 -1.2880 2.0951 10 6 6.4478 -1.1997 0.8709 11 1 6.1428 -1.6812 -0.0464 12 6 7.6371 -0.5041 0.9222 13 7 7.9470 0.1907 1.9949 14 14 8.8086 -0.5488 -0.5323 15 1 8.4855 0.5628 -1.4624 16 1 10.2045 -0.3994 -0.0482 17 1 8.6669 -1.8453 -1.2423 18 6 5.0993 -2.6771 2.5266 19 6 6.1676 -1.9458 3.3419 20 1 -0.5400 -0.9353 0.0045 21 1 -0.5400 0.9353 -0.0044 22 1 1.8500 -0.9353 0.0044 23 1 2.6251 1.4004 -0.9293 24 1 1.3583 2.1319 0.0848 25 1 4.2545 2.8917 0.3361 26 1 2.9448 3.4788 1.3887 27 1 4.3923 2.7297 2.1035 28 1 4.7818 0.6079 0.3853 29 1 5.1489 0.7193 2.7521 30 1 3.8025 -0.4249 2.9672 31 1 8.7474 0.7386 2.0035 32 1 4.1025 -2.7567 2.9602 33 1 5.4200 -3.5277 1.9250 34 1 7.1910 -2.3152 3.2767 35 1 5.8737 -1.5440 4.3116 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000122302621.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:23:59 Heat of formation + Delta-G solvation = 29.640829 kcal Electronic energy + Delta-G solvation = -14048.331104 eV Core-core repulsion = 11854.040890 eV Total energy + Delta-G solvation = -2194.290213 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 209.148 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -37.49477 -35.97759 -33.23661 -31.88723 -29.72553 -26.26408 -25.49624 -23.95610 -20.97922 -20.40887 -19.38576 -18.88567 -16.03228 -15.16374 -14.57281 -14.45696 -14.12161 -13.82088 -13.15691 -12.92362 -12.51301 -12.05350 -11.83036 -11.52730 -11.23888 -10.95869 -10.84251 -10.78445 -10.58649 -10.41158 -10.39508 -10.07307 -9.36751 -8.96048 -8.75383 -8.40100 -8.02120 -7.26756 -5.99288 -4.03427 2.66503 3.29366 3.37551 3.41833 4.42353 4.99451 5.21409 5.29695 5.47858 5.51414 5.59395 5.74265 5.84552 5.91159 6.12847 6.22697 6.27677 6.34401 6.41791 6.51058 6.57624 6.68260 6.82852 6.87347 7.01282 7.07363 7.16905 7.19150 7.50421 7.56934 7.92176 8.17282 8.48945 8.58999 8.99528 9.60473 11.08676 Molecular weight = 209.15amu Principal moments of inertia in cm(-1) A = 0.027736 B = 0.009574 C = 0.008628 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1009.270209 B = 2923.893109 C = 3244.283901 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C -0.113 4.113 3 C -0.083 4.083 4 C 0.084 3.916 5 H 0.066 0.934 6 C -0.180 4.180 7 N -0.667 5.667 8 C 0.108 3.892 9 C 0.053 3.947 10 C -0.481 4.481 11 H 0.061 0.939 12 C 0.068 3.932 13 N -0.882 5.882 14 Si 0.886 3.114 15 H -0.282 1.282 16 H -0.288 1.288 17 H -0.274 1.274 18 C -0.208 4.208 19 C -0.165 4.165 20 H 0.090 0.910 21 H 0.086 0.914 22 H 0.119 0.881 23 H 0.071 0.929 24 H 0.058 0.942 25 H 0.055 0.945 26 H 0.048 0.952 27 H 0.057 0.943 28 H 0.353 0.647 29 H 0.027 0.973 30 H 0.035 0.965 31 H 0.258 0.742 32 H 0.062 0.938 33 H 0.073 0.927 34 H 0.078 0.922 35 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.746 2.719 -1.548 9.289 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.268 4.268 2 C -0.131 4.131 3 C -0.121 4.121 4 C -0.027 4.027 5 H 0.085 0.915 6 C -0.239 4.239 7 N -0.300 5.300 8 C -0.021 4.021 9 C 0.052 3.948 10 C -0.520 4.520 11 H 0.079 0.921 12 C -0.135 4.135 13 N -0.519 5.519 14 Si 0.714 3.286 15 H -0.208 1.208 16 H -0.214 1.214 17 H -0.199 1.199 18 C -0.245 4.245 19 C -0.203 4.203 20 H 0.108 0.892 21 H 0.105 0.895 22 H 0.137 0.863 23 H 0.090 0.910 24 H 0.076 0.924 25 H 0.074 0.926 26 H 0.067 0.933 27 H 0.076 0.924 28 H 0.174 0.826 29 H 0.046 0.954 30 H 0.053 0.947 31 H 0.068 0.932 32 H 0.080 0.920 33 H 0.092 0.908 34 H 0.097 0.903 35 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -9.008 2.271 -1.467 9.405 hybrid contribution 1.319 0.834 -0.401 1.611 sum -7.689 3.105 -1.868 8.500 Atomic orbital electron populations 1.23693 0.96108 1.00857 1.06100 1.23056 0.95156 0.99663 0.95223 1.20793 0.97373 0.94686 0.99229 1.21495 0.94002 0.89966 0.97242 0.91547 1.22508 1.00759 0.98327 1.02301 1.60510 1.17433 1.38172 1.13845 1.21373 0.94412 0.97431 0.88908 1.18783 0.94683 0.87329 0.94019 1.20402 1.02204 1.33544 0.95808 0.92072 1.24999 0.97374 0.95625 0.95473 1.70000 1.26111 1.28260 1.27574 0.86691 0.80557 0.78501 0.82874 1.20770 1.21424 1.19868 1.22983 0.96811 0.98844 1.05873 1.22521 0.96785 1.05836 0.95137 0.89206 0.89520 0.86330 0.91029 0.92363 0.92606 0.93287 0.92422 0.82603 0.95447 0.94674 0.93234 0.91951 0.90827 0.90326 0.92268 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.23 -3.00 14.32 29.01 0.42 -2.59 16 2 C -0.11 -1.67 9.25 -36.03 -0.33 -2.01 16 3 C -0.08 -1.20 5.34 -27.88 -0.15 -1.35 16 4 C 0.08 1.38 2.58 -67.71 -0.17 1.21 16 5 H 0.07 1.11 7.71 -51.93 -0.40 0.71 16 6 C -0.18 -2.80 9.16 37.16 0.34 -2.45 16 7 N -0.67 -13.31 5.70 -106.72 -0.61 -13.92 16 8 C 0.11 2.40 5.63 -3.82 -0.02 2.38 16 9 C 0.05 1.28 1.76 -155.67 -0.27 1.01 16 10 C -0.48 -12.72 7.47 -34.44 -0.26 -12.98 16 11 H 0.06 1.65 7.82 -52.49 -0.41 1.24 16 12 C 0.07 1.81 5.39 -17.82 -0.10 1.71 16 13 N -0.88 -24.47 12.93 55.43 0.72 -23.75 16 14 Si 0.89 20.81 29.55 -169.99 -5.02 15.79 16 15 H -0.28 -6.53 7.11 56.52 0.40 -6.12 16 16 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 17 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16 18 C -0.21 -4.67 9.88 -26.74 -0.26 -4.93 16 19 C -0.16 -3.94 9.46 -26.74 -0.25 -4.19 16 20 H 0.09 1.08 8.06 -52.49 -0.42 0.66 16 21 H 0.09 1.02 7.84 -52.49 -0.41 0.61 16 22 H 0.12 1.96 8.03 -52.49 -0.42 1.54 16 23 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 24 H 0.06 0.74 7.79 -51.93 -0.40 0.34 16 25 H 0.05 0.87 8.13 -51.93 -0.42 0.45 16 26 H 0.05 0.65 8.14 -51.93 -0.42 0.22 16 27 H 0.06 0.99 7.56 -51.93 -0.39 0.59 16 28 H 0.35 7.66 7.45 -39.29 -0.29 7.37 16 29 H 0.03 0.66 7.57 -51.93 -0.39 0.27 16 30 H 0.03 0.74 7.73 -51.93 -0.40 0.34 16 31 H 0.26 6.91 8.32 -40.82 -0.34 6.57 16 32 H 0.06 1.29 8.08 -51.93 -0.42 0.87 16 33 H 0.07 1.65 8.14 -51.93 -0.42 1.23 16 34 H 0.08 2.00 8.14 -51.93 -0.42 1.58 16 35 H 0.06 1.34 8.14 -51.93 -0.42 0.91 16 LS Contribution 292.54 15.07 4.41 4.41 Total: -1.00 -26.55 292.54 -7.62 -34.16 By element: Atomic # 1 Polarization: 13.56 SS G_CDS: -6.04 Total: 7.51 kcal Atomic # 6 Polarization: -23.13 SS G_CDS: -1.07 Total: -24.20 kcal Atomic # 7 Polarization: -37.78 SS G_CDS: 0.11 Total: -37.67 kcal Atomic # 14 Polarization: 20.81 SS G_CDS: -5.02 Total: 15.79 kcal Total LS contribution 4.41 Total: 4.41 kcal Total: -26.55 -7.62 -34.16 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000122302621.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.803 kcal (2) G-P(sol) polarization free energy of solvation -26.547 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.256 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.615 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.162 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.641 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds