Wall clock time and date at job start Mon Mar 30 2020 02:23:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31004 * 1 3 3 C 1.50701 * 119.99657 * 2 1 4 4 C 1.53006 * 109.46969 * 124.73282 * 3 2 1 5 5 H 1.09001 * 109.46830 * 304.99756 * 4 3 2 6 6 C 1.53000 * 109.47136 * 185.00092 * 4 3 2 7 7 N 1.46895 * 109.47009 * 64.99749 * 4 3 2 8 8 C 1.46909 * 110.99805 * 205.00223 * 7 4 3 9 9 C 1.53001 * 109.47215 * 174.68974 * 8 7 4 10 10 C 1.50704 * 115.54865 * 39.57501 * 9 8 7 11 11 H 1.07997 * 119.99722 * 265.25955 * 10 9 8 12 12 C 1.37875 * 119.99800 * 85.25719 * 10 9 8 13 13 N 1.31514 * 120.00593 * 353.34053 * 12 10 9 14 14 Si 1.86808 * 119.99571 * 173.33579 * 12 10 9 15 15 H 1.48500 * 109.47062 * 90.00389 * 14 12 10 16 16 H 1.48500 * 109.46753 * 210.00372 * 14 12 10 17 17 H 1.48494 * 109.47293 * 330.00459 * 14 12 10 18 18 C 1.52989 * 117.49933 * 253.86596 * 9 8 7 19 19 C 1.52994 * 117.49712 * 185.24184 * 9 8 7 20 20 H 1.08000 * 119.99908 * 180.27512 * 1 2 3 21 21 H 1.07997 * 120.00048 * 0.26759 * 1 2 3 22 22 H 1.07997 * 120.00048 * 179.73241 * 2 1 3 23 23 H 1.09004 * 109.46853 * 244.72671 * 3 2 1 24 24 H 1.08993 * 109.47661 * 4.73115 * 3 2 1 25 25 H 1.09001 * 109.46987 * 299.99568 * 6 4 3 26 26 H 1.08995 * 109.47201 * 59.99151 * 6 4 3 27 27 H 1.08993 * 109.46973 * 179.97438 * 6 4 3 28 28 H 1.00899 * 111.00305 * 81.05188 * 7 4 3 29 29 H 1.08996 * 109.46878 * 294.69033 * 8 7 4 30 30 H 1.08998 * 109.46919 * 54.69155 * 8 7 4 31 31 H 0.96998 * 119.99993 * 185.05964 * 13 12 10 32 32 H 1.09002 * 117.50130 * 359.97438 * 18 9 8 33 33 H 1.09002 * 117.50051 * 145.02571 * 18 9 8 34 34 H 1.09005 * 117.49854 * 214.97786 * 19 9 8 35 35 H 1.08998 * 117.50207 * 359.97438 * 19 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3052 0.0000 4 6 3.0302 1.3359 1.1855 5 1 2.4797 1.1519 2.1081 6 6 3.7040 2.7076 1.2587 7 7 4.0533 0.2965 1.0101 8 6 4.6113 -0.1167 2.3047 9 6 5.5732 -1.2880 2.0951 10 6 6.4478 -1.1997 0.8709 11 1 6.1428 -1.6812 -0.0464 12 6 7.6371 -0.5041 0.9222 13 7 7.9470 0.1907 1.9949 14 14 8.8086 -0.5488 -0.5323 15 1 8.4855 0.5628 -1.4624 16 1 10.2045 -0.3994 -0.0482 17 1 8.6669 -1.8453 -1.2423 18 6 5.0993 -2.6771 2.5266 19 6 6.1676 -1.9458 3.3419 20 1 -0.5400 -0.9353 0.0045 21 1 -0.5400 0.9353 -0.0044 22 1 1.8500 -0.9353 0.0044 23 1 2.6251 1.4004 -0.9293 24 1 1.3583 2.1319 0.0848 25 1 4.2545 2.8917 0.3361 26 1 2.9448 3.4788 1.3887 27 1 4.3923 2.7297 2.1035 28 1 4.7818 0.6079 0.3853 29 1 5.1489 0.7193 2.7521 30 1 3.8025 -0.4249 2.9672 31 1 8.7474 0.7386 2.0035 32 1 4.1025 -2.7567 2.9602 33 1 5.4200 -3.5277 1.9250 34 1 7.1910 -2.3152 3.2767 35 1 5.8737 -1.5440 4.3116 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000122302621.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:23:58 Heat of formation + Delta-G solvation = 15.455708 kcal Electronic energy + Delta-G solvation = -14048.946217 eV Core-core repulsion = 11854.040890 eV Total energy + Delta-G solvation = -2194.905326 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 209.148 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.10402 -37.56374 -34.51293 -33.93510 -31.17769 -27.54893 -27.41679 -25.64270 -22.85439 -21.75545 -20.95008 -20.34828 -17.92527 -16.65734 -16.47331 -15.91829 -15.59654 -15.52571 -14.59889 -14.27289 -14.17564 -13.57319 -13.13800 -13.12655 -12.95514 -12.83120 -12.73818 -12.31524 -12.06701 -11.95679 -11.87499 -11.57476 -11.21941 -10.73139 -10.39181 -10.05560 -9.89511 -8.88604 -8.04324 -6.13128 1.41881 1.45490 1.53970 1.58579 2.45762 3.23149 3.43577 3.72242 4.01489 4.27790 4.33503 4.40846 4.57343 4.61652 4.63073 4.79401 4.80560 4.90342 4.93887 5.02988 5.10124 5.13432 5.23398 5.27680 5.32071 5.38618 5.66334 5.67008 5.83366 5.96275 6.07022 6.45566 6.64101 6.81638 6.94916 7.53067 9.03016 Molecular weight = 209.15amu Principal moments of inertia in cm(-1) A = 0.027736 B = 0.009574 C = 0.008628 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1009.270209 B = 2923.893109 C = 3244.283901 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.140 4.140 3 C -0.074 4.074 4 C 0.083 3.917 5 H 0.066 0.934 6 C -0.173 4.173 7 N -0.668 5.668 8 C 0.122 3.878 9 C 0.027 3.973 10 C -0.487 4.487 11 H 0.051 0.949 12 C 0.027 3.973 13 N -0.909 5.909 14 Si 0.943 3.057 15 H -0.274 1.274 16 H -0.290 1.290 17 H -0.273 1.273 18 C -0.187 4.187 19 C -0.171 4.171 20 H 0.099 0.901 21 H 0.106 0.894 22 H 0.095 0.905 23 H 0.066 0.934 24 H 0.083 0.917 25 H 0.052 0.948 26 H 0.077 0.923 27 H 0.034 0.966 28 H 0.341 0.659 29 H 0.001 0.999 30 H 0.046 0.954 31 H 0.257 0.743 32 H 0.085 0.915 33 H 0.072 0.928 34 H 0.055 0.945 35 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.315 3.108 -2.187 10.992 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.245 4.245 2 C -0.158 4.158 3 C -0.112 4.112 4 C -0.027 4.027 5 H 0.084 0.916 6 C -0.232 4.232 7 N -0.299 5.299 8 C -0.008 4.008 9 C 0.027 3.973 10 C -0.525 4.525 11 H 0.069 0.931 12 C -0.173 4.173 13 N -0.547 5.547 14 Si 0.770 3.230 15 H -0.200 1.200 16 H -0.217 1.217 17 H -0.198 1.198 18 C -0.224 4.224 19 C -0.209 4.209 20 H 0.117 0.883 21 H 0.124 0.876 22 H 0.113 0.887 23 H 0.084 0.916 24 H 0.102 0.898 25 H 0.071 0.929 26 H 0.096 0.904 27 H 0.053 0.947 28 H 0.160 0.840 29 H 0.019 0.981 30 H 0.064 0.936 31 H 0.066 0.934 32 H 0.103 0.897 33 H 0.090 0.910 34 H 0.074 0.926 35 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -10.597 2.654 -2.111 11.127 hybrid contribution 1.722 0.685 -0.193 1.864 sum -8.875 3.339 -2.305 9.758 Atomic orbital electron populations 1.23905 0.95407 1.02232 1.02929 1.22919 0.95871 0.98838 0.98179 1.20716 0.97149 0.95524 0.97792 1.21606 0.93360 0.89375 0.98386 0.91592 1.22422 1.00968 0.98699 1.01126 1.60505 1.17137 1.39931 1.12348 1.21144 0.93939 0.95667 0.90001 1.18982 0.95558 0.89200 0.93573 1.20541 1.02750 1.33111 0.96144 0.93116 1.25581 0.98626 0.95421 0.97635 1.70103 1.26471 1.29025 1.29126 0.85786 0.78434 0.78519 0.80286 1.19968 1.21655 1.19802 1.22972 0.97315 0.97585 1.04573 1.22433 0.96113 1.06633 0.95691 0.88280 0.87626 0.88708 0.91553 0.89843 0.92933 0.90391 0.94678 0.84013 0.98119 0.93579 0.93427 0.89651 0.90971 0.92589 0.91238 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -4.78 14.32 67.78 0.97 -3.81 16 2 C -0.14 -3.89 9.25 25.64 0.24 -3.65 16 3 C -0.07 -1.99 5.34 29.85 0.16 -1.83 16 4 C 0.08 2.63 2.58 44.92 0.12 2.75 16 5 H 0.07 2.11 7.71 -2.39 -0.02 2.09 16 6 C -0.17 -5.18 9.16 71.98 0.66 -4.52 16 7 N -0.67 -26.58 5.70 -491.55 -2.80 -29.38 16 8 C 0.12 5.43 5.63 86.30 0.49 5.92 16 9 C 0.03 1.35 1.76 -52.93 -0.09 1.25 16 10 C -0.49 -25.97 7.47 25.60 0.19 -25.78 16 11 H 0.05 2.75 7.82 -2.91 -0.02 2.73 16 12 C 0.03 1.46 5.39 84.65 0.46 1.91 16 13 N -0.91 -51.14 12.93 21.45 0.28 -50.86 16 14 Si 0.94 43.00 29.55 68.60 2.03 45.02 16 15 H -0.27 -12.09 7.11 99.48 0.71 -11.38 16 16 H -0.29 -13.27 7.11 99.48 0.71 -12.57 16 17 H -0.27 -12.32 7.11 99.48 0.71 -11.62 16 18 C -0.19 -8.24 9.88 30.59 0.30 -7.93 16 19 C -0.17 -8.17 9.46 30.59 0.29 -7.88 16 20 H 0.10 2.08 8.06 -2.91 -0.02 2.06 16 21 H 0.11 2.05 7.84 -2.91 -0.02 2.02 16 22 H 0.09 3.08 8.03 -2.91 -0.02 3.06 16 23 H 0.07 1.84 8.14 -2.39 -0.02 1.82 16 24 H 0.08 1.83 7.79 -2.39 -0.02 1.81 16 25 H 0.05 1.59 8.13 -2.39 -0.02 1.57 16 26 H 0.08 1.86 8.14 -2.39 -0.02 1.84 16 27 H 0.03 1.19 7.56 -2.39 -0.02 1.17 16 28 H 0.34 14.95 7.45 -89.69 -0.67 14.28 16 29 H 0.00 0.03 7.57 -2.39 -0.02 0.01 16 30 H 0.05 1.91 7.73 -2.39 -0.02 1.89 16 31 H 0.26 13.94 8.32 -92.71 -0.77 13.17 16 32 H 0.09 3.34 8.08 -2.39 -0.02 3.33 16 33 H 0.07 3.17 8.14 -2.39 -0.02 3.15 16 34 H 0.06 2.90 8.14 -2.38 -0.02 2.88 16 35 H 0.07 3.13 8.14 -2.39 -0.02 3.11 16 Total: -1.00 -56.00 292.54 3.64 -52.37 By element: Atomic # 1 Polarization: 26.08 SS G_CDS: 0.36 Total: 26.44 kcal Atomic # 6 Polarization: -47.36 SS G_CDS: 3.77 Total: -43.58 kcal Atomic # 7 Polarization: -77.72 SS G_CDS: -2.53 Total: -80.25 kcal Atomic # 14 Polarization: 43.00 SS G_CDS: 2.03 Total: 45.02 kcal Total: -56.00 3.64 -52.37 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000122302621.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.823 kcal (2) G-P(sol) polarization free energy of solvation -56.003 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.820 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.636 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.367 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.456 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds