Wall clock time and date at job start Mon Mar 30 2020 02:24:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31009 * 1 3 3 C 1.50703 * 119.99738 * 2 1 4 4 C 1.52998 * 109.46985 * 125.00044 * 3 2 1 5 5 H 1.09002 * 109.47421 * 54.99714 * 4 3 2 6 6 C 1.52995 * 109.47195 * 174.99906 * 4 3 2 7 7 N 1.46906 * 109.47071 * 294.99863 * 4 3 2 8 8 C 1.46894 * 111.00128 * 154.99977 * 7 4 3 9 9 C 1.52998 * 109.47244 * 174.73104 * 8 7 4 10 10 C 1.50695 * 115.55134 * 39.57792 * 9 8 7 11 11 H 1.08004 * 119.99961 * 265.28544 * 10 9 8 12 12 C 1.37876 * 119.99996 * 85.27937 * 10 9 8 13 13 N 1.31510 * 120.00126 * 353.45434 * 12 10 9 14 14 Si 1.86802 * 119.99931 * 173.45248 * 12 10 9 15 15 H 1.48497 * 109.47165 * 60.00085 * 14 12 10 16 16 H 1.48498 * 109.47113 * 180.02562 * 14 12 10 17 17 H 1.48506 * 109.47244 * 299.99991 * 14 12 10 18 18 C 1.53004 * 117.49943 * 253.87120 * 9 8 7 19 19 C 1.53006 * 117.50165 * 185.24647 * 9 8 7 20 20 H 1.08000 * 120.00086 * 0.02562 * 1 2 3 21 21 H 1.07998 * 120.00035 * 179.97438 * 1 2 3 22 22 H 1.07994 * 120.00035 * 179.97438 * 2 1 3 23 23 H 1.09006 * 109.47077 * 4.99856 * 3 2 1 24 24 H 1.08995 * 109.46905 * 244.99668 * 3 2 1 25 25 H 1.08999 * 109.46945 * 299.99933 * 6 4 3 26 26 H 1.09002 * 109.47093 * 59.99607 * 6 4 3 27 27 H 1.09003 * 109.47338 * 179.97438 * 6 4 3 28 28 H 1.00895 * 111.00160 * 31.04621 * 7 4 3 29 29 H 1.08995 * 109.47359 * 294.73535 * 8 7 4 30 30 H 1.09003 * 109.46929 * 54.73347 * 8 7 4 31 31 H 0.97001 * 120.00306 * 185.06653 * 13 12 10 32 32 H 1.09000 * 117.50002 * 359.97438 * 18 9 8 33 33 H 1.08997 * 117.49861 * 145.02278 * 18 9 8 34 34 H 1.08995 * 117.49884 * 214.97931 * 19 9 8 35 35 H 1.08999 * 117.49388 * 359.97438 * 19 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 6 2.0635 1.3052 0.0000 4 6 3.0351 1.3331 1.1816 5 1 3.6827 0.4574 1.1404 6 6 3.8875 2.6016 1.1110 7 7 2.2765 1.3223 2.4396 8 6 3.0817 0.7664 3.5352 9 6 2.3098 0.8920 4.8502 10 6 0.8305 0.6178 4.7642 11 1 0.1367 1.4347 4.6306 12 6 0.3627 -0.6760 4.8559 13 7 1.2103 -1.6809 4.8889 14 14 -1.4751 -1.0013 4.9335 15 1 -2.1238 -0.4714 3.7073 16 1 -1.7154 -2.4636 5.0287 17 1 -2.0473 -0.3275 6.1268 18 6 2.7743 1.9596 5.8429 19 6 3.0311 0.4798 6.1350 20 1 -0.5400 0.9353 -0.0004 21 1 -0.5400 -0.9353 -0.0004 22 1 1.8501 -0.9352 0.0004 23 1 1.3585 2.1317 0.0895 24 1 2.6213 1.4026 -0.9313 25 1 4.4504 2.6096 0.1776 26 1 3.2399 3.4774 1.1523 27 1 4.5794 2.6218 1.9531 28 1 1.4099 0.8163 2.3350 29 1 3.2907 -0.2845 3.3355 30 1 4.0203 1.3154 3.6110 31 1 0.8814 -2.5934 4.8792 32 1 3.6301 2.5722 5.5593 33 1 2.0098 2.4639 6.4339 34 1 2.4355 0.0107 6.9182 35 1 4.0554 0.1187 6.0434 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000122302824.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:24:01 Heat of formation + Delta-G solvation = 30.113390 kcal Electronic energy + Delta-G solvation = -14207.064452 eV Core-core repulsion = 12012.794731 eV Total energy + Delta-G solvation = -2194.269722 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 209.148 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -37.51159 -35.98750 -32.97887 -31.85731 -29.91590 -26.31239 -25.47396 -23.97959 -20.96830 -19.99364 -19.49135 -18.89522 -15.90019 -15.34074 -14.62264 -14.46971 -14.39844 -13.57295 -13.38191 -12.67750 -12.40700 -11.93177 -11.69764 -11.49845 -11.27685 -11.09233 -10.90624 -10.83112 -10.47955 -10.43507 -10.20876 -10.03310 -9.34678 -8.92261 -8.73544 -8.36814 -7.99352 -7.26240 -5.96538 -4.00620 2.65573 3.33187 3.37946 3.41449 4.44734 4.99809 5.20320 5.31843 5.40500 5.53214 5.59688 5.84254 5.88485 5.98756 6.15678 6.23819 6.27866 6.32025 6.45995 6.50846 6.67049 6.68872 6.86879 6.89527 6.99377 7.06754 7.12732 7.20520 7.53308 7.59143 7.94702 8.22197 8.55051 8.63323 9.01832 9.63146 11.11553 Molecular weight = 209.15amu Principal moments of inertia in cm(-1) A = 0.022221 B = 0.013402 C = 0.009242 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1259.748392 B = 2088.760320 C = 3028.942799 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.156 4.156 3 C -0.092 4.092 4 C 0.082 3.918 5 H 0.032 0.968 6 C -0.136 4.136 7 N -0.671 5.671 8 C 0.108 3.892 9 C 0.053 3.947 10 C -0.482 4.482 11 H 0.060 0.940 12 C 0.070 3.930 13 N -0.882 5.882 14 Si 0.884 3.116 15 H -0.275 1.275 16 H -0.290 1.290 17 H -0.278 1.278 18 C -0.208 4.208 19 C -0.164 4.164 20 H 0.096 0.904 21 H 0.092 0.908 22 H 0.103 0.897 23 H 0.073 0.927 24 H 0.068 0.932 25 H 0.044 0.956 26 H 0.058 0.942 27 H 0.051 0.949 28 H 0.356 0.644 29 H 0.025 0.975 30 H 0.035 0.965 31 H 0.258 0.742 32 H 0.062 0.938 33 H 0.073 0.927 34 H 0.078 0.922 35 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.218 3.550 -7.756 8.813 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C -0.174 4.174 3 C -0.130 4.130 4 C -0.029 4.029 5 H 0.050 0.950 6 C -0.194 4.194 7 N -0.305 5.305 8 C -0.021 4.021 9 C 0.052 3.948 10 C -0.520 4.520 11 H 0.078 0.922 12 C -0.133 4.133 13 N -0.520 5.520 14 Si 0.712 3.288 15 H -0.201 1.201 16 H -0.215 1.215 17 H -0.203 1.203 18 C -0.245 4.245 19 C -0.202 4.202 20 H 0.114 0.886 21 H 0.111 0.889 22 H 0.121 0.879 23 H 0.091 0.909 24 H 0.087 0.913 25 H 0.063 0.937 26 H 0.077 0.923 27 H 0.070 0.930 28 H 0.178 0.822 29 H 0.043 0.957 30 H 0.054 0.946 31 H 0.068 0.932 32 H 0.080 0.920 33 H 0.092 0.908 34 H 0.097 0.903 35 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 2.368 3.985 -7.528 8.841 hybrid contribution -0.945 -1.379 -0.042 1.672 sum 1.423 2.607 -7.570 8.132 Atomic orbital electron populations 1.23796 0.95964 1.01612 1.00972 1.22918 0.96144 0.98408 0.99929 1.20937 0.98502 0.95615 0.97943 1.21427 0.94361 0.96556 0.90536 0.94968 1.21774 0.99228 0.98302 1.00061 1.60491 1.07554 1.60308 1.02150 1.21374 0.93658 0.95320 0.91753 1.18779 0.94367 0.95642 0.86020 1.20360 0.89671 0.92247 1.49728 0.92170 1.24975 0.97060 0.96354 0.94903 1.69988 1.33577 0.98496 1.49914 0.86783 0.86328 0.76870 0.78815 1.20079 1.21543 1.20319 1.22983 1.01712 0.91803 1.08011 1.22520 0.98913 0.95314 1.03484 0.88600 0.88912 0.87892 0.90865 0.91336 0.93686 0.92327 0.92997 0.82229 0.95683 0.94611 0.93204 0.91950 0.90822 0.90318 0.92276 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.88 14.30 29.01 0.41 -2.47 16 2 C -0.16 -2.45 8.40 -36.03 -0.30 -2.75 16 3 C -0.09 -1.37 5.26 -27.88 -0.15 -1.52 16 4 C 0.08 1.40 2.63 -67.71 -0.18 1.22 16 5 H 0.03 0.57 7.86 -51.93 -0.41 0.17 16 6 C -0.14 -2.03 9.41 37.16 0.35 -1.69 16 7 N -0.67 -14.05 6.07 -106.73 -0.65 -14.69 16 8 C 0.11 2.49 5.58 -3.83 -0.02 2.47 16 9 C 0.05 1.32 1.76 -155.66 -0.27 1.04 16 10 C -0.48 -13.03 7.47 -34.44 -0.26 -13.29 16 11 H 0.06 1.66 7.82 -52.48 -0.41 1.25 16 12 C 0.07 1.89 5.39 -17.82 -0.10 1.79 16 13 N -0.88 -24.86 12.92 55.43 0.72 -24.14 16 14 Si 0.88 21.10 29.55 -169.99 -5.02 16.08 16 15 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 16 H -0.29 -6.92 7.11 56.52 0.40 -6.51 16 17 H -0.28 -6.65 7.11 56.52 0.40 -6.24 16 18 C -0.21 -4.75 9.88 -26.73 -0.26 -5.01 16 19 C -0.16 -3.98 9.46 -26.72 -0.25 -4.24 16 20 H 0.10 1.40 7.84 -52.49 -0.41 0.99 16 21 H 0.09 1.37 8.06 -52.49 -0.42 0.95 16 22 H 0.10 1.62 8.06 -52.49 -0.42 1.19 16 23 H 0.07 1.10 7.79 -51.93 -0.40 0.69 16 24 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 25 H 0.04 0.56 8.14 -51.93 -0.42 0.14 16 26 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 27 H 0.05 0.81 7.38 -51.93 -0.38 0.43 16 28 H 0.36 8.09 6.34 -39.29 -0.25 7.84 16 29 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 30 H 0.04 0.77 7.13 -51.93 -0.37 0.40 16 31 H 0.26 7.04 8.32 -40.82 -0.34 6.70 16 32 H 0.06 1.31 8.08 -51.93 -0.42 0.89 16 33 H 0.07 1.67 8.14 -51.93 -0.42 1.25 16 34 H 0.08 2.03 8.14 -51.93 -0.42 1.61 16 35 H 0.06 1.35 8.14 -51.93 -0.42 0.93 16 LS Contribution 291.07 15.07 4.39 4.39 Total: -1.00 -27.50 291.07 -7.59 -35.10 By element: Atomic # 1 Polarization: 13.72 SS G_CDS: -6.00 Total: 7.72 kcal Atomic # 6 Polarization: -23.42 SS G_CDS: -1.03 Total: -24.45 kcal Atomic # 7 Polarization: -38.90 SS G_CDS: 0.07 Total: -38.83 kcal Atomic # 14 Polarization: 21.10 SS G_CDS: -5.02 Total: 16.08 kcal Total LS contribution 4.39 Total: 4.39 kcal Total: -27.50 -7.59 -35.10 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000122302824.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.210 kcal (2) G-P(sol) polarization free energy of solvation -27.503 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.707 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.594 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.097 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.113 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds