Wall clock time and date at job start Mon Mar 30 2020 02:24:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31009 * 1 3 3 C 1.50703 * 119.99738 * 2 1 4 4 C 1.52998 * 109.46985 * 125.00044 * 3 2 1 5 5 H 1.09002 * 109.47421 * 54.99714 * 4 3 2 6 6 C 1.52995 * 109.47195 * 174.99906 * 4 3 2 7 7 N 1.46906 * 109.47071 * 294.99863 * 4 3 2 8 8 C 1.46894 * 111.00128 * 154.99977 * 7 4 3 9 9 C 1.52998 * 109.47244 * 174.73104 * 8 7 4 10 10 C 1.50695 * 115.55134 * 39.57792 * 9 8 7 11 11 H 1.08004 * 119.99961 * 265.28544 * 10 9 8 12 12 C 1.37876 * 119.99996 * 85.27937 * 10 9 8 13 13 N 1.31510 * 120.00126 * 353.45434 * 12 10 9 14 14 Si 1.86802 * 119.99931 * 173.45248 * 12 10 9 15 15 H 1.48497 * 109.47165 * 60.00085 * 14 12 10 16 16 H 1.48498 * 109.47113 * 180.02562 * 14 12 10 17 17 H 1.48506 * 109.47244 * 299.99991 * 14 12 10 18 18 C 1.53004 * 117.49943 * 253.87120 * 9 8 7 19 19 C 1.53006 * 117.50165 * 185.24647 * 9 8 7 20 20 H 1.08000 * 120.00086 * 0.02562 * 1 2 3 21 21 H 1.07998 * 120.00035 * 179.97438 * 1 2 3 22 22 H 1.07994 * 120.00035 * 179.97438 * 2 1 3 23 23 H 1.09006 * 109.47077 * 4.99856 * 3 2 1 24 24 H 1.08995 * 109.46905 * 244.99668 * 3 2 1 25 25 H 1.08999 * 109.46945 * 299.99933 * 6 4 3 26 26 H 1.09002 * 109.47093 * 59.99607 * 6 4 3 27 27 H 1.09003 * 109.47338 * 179.97438 * 6 4 3 28 28 H 1.00895 * 111.00160 * 31.04621 * 7 4 3 29 29 H 1.08995 * 109.47359 * 294.73535 * 8 7 4 30 30 H 1.09003 * 109.46929 * 54.73347 * 8 7 4 31 31 H 0.97001 * 120.00306 * 185.06653 * 13 12 10 32 32 H 1.09000 * 117.50002 * 359.97438 * 18 9 8 33 33 H 1.08997 * 117.49861 * 145.02278 * 18 9 8 34 34 H 1.08995 * 117.49884 * 214.97931 * 19 9 8 35 35 H 1.08999 * 117.49388 * 359.97438 * 19 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 6 2.0635 1.3052 0.0000 4 6 3.0351 1.3331 1.1816 5 1 3.6827 0.4574 1.1404 6 6 3.8875 2.6016 1.1110 7 7 2.2765 1.3223 2.4396 8 6 3.0817 0.7664 3.5352 9 6 2.3098 0.8920 4.8502 10 6 0.8305 0.6178 4.7642 11 1 0.1367 1.4347 4.6306 12 6 0.3627 -0.6760 4.8559 13 7 1.2103 -1.6809 4.8889 14 14 -1.4751 -1.0013 4.9335 15 1 -2.1238 -0.4714 3.7073 16 1 -1.7154 -2.4636 5.0287 17 1 -2.0473 -0.3275 6.1268 18 6 2.7743 1.9596 5.8429 19 6 3.0311 0.4798 6.1350 20 1 -0.5400 0.9353 -0.0004 21 1 -0.5400 -0.9353 -0.0004 22 1 1.8501 -0.9352 0.0004 23 1 1.3585 2.1317 0.0895 24 1 2.6213 1.4026 -0.9313 25 1 4.4504 2.6096 0.1776 26 1 3.2399 3.4774 1.1523 27 1 4.5794 2.6218 1.9531 28 1 1.4099 0.8163 2.3350 29 1 3.2907 -0.2845 3.3355 30 1 4.0203 1.3154 3.6110 31 1 0.8814 -2.5934 4.8792 32 1 3.6301 2.5722 5.5593 33 1 2.0098 2.4639 6.4339 34 1 2.4355 0.0107 6.9182 35 1 4.0554 0.1187 6.0434 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000122302824.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:24:01 Heat of formation + Delta-G solvation = 14.986237 kcal Electronic energy + Delta-G solvation = -14207.720415 eV Core-core repulsion = 12012.794731 eV Total energy + Delta-G solvation = -2194.925684 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 209.148 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.13588 -37.62541 -34.36514 -33.92606 -31.38453 -27.55378 -27.50506 -25.69907 -22.86173 -21.36219 -21.02781 -20.54741 -17.88364 -16.76674 -16.58383 -16.06636 -15.83424 -15.33443 -14.84541 -14.34710 -13.93898 -13.40232 -13.30358 -13.04040 -12.84828 -12.80862 -12.56932 -12.50365 -12.31002 -11.99571 -11.76290 -11.51878 -11.22128 -10.74008 -10.38590 -10.15495 -9.89171 -8.95561 -8.04464 -6.13479 1.42635 1.42856 1.44756 1.50773 2.45575 3.23029 3.42544 3.71147 3.96642 4.12596 4.36243 4.39456 4.52888 4.62649 4.65511 4.78828 4.84196 4.89482 4.98306 5.02024 5.10456 5.12050 5.15107 5.24539 5.29655 5.51724 5.66479 5.67007 5.77525 5.82667 5.90582 6.45322 6.64064 6.83485 6.94658 7.52809 9.02805 Molecular weight = 209.15amu Principal moments of inertia in cm(-1) A = 0.022221 B = 0.013402 C = 0.009242 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1259.748392 B = 2088.760320 C = 3028.942799 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.167 4.167 3 C -0.085 4.085 4 C 0.077 3.923 5 H 0.023 0.977 6 C -0.129 4.129 7 N -0.674 5.674 8 C 0.122 3.878 9 C 0.025 3.975 10 C -0.489 4.489 11 H 0.050 0.950 12 C 0.030 3.970 13 N -0.909 5.909 14 Si 0.939 3.061 15 H -0.266 1.266 16 H -0.290 1.290 17 H -0.277 1.277 18 C -0.186 4.186 19 C -0.169 4.169 20 H 0.103 0.897 21 H 0.095 0.905 22 H 0.098 0.902 23 H 0.074 0.926 24 H 0.097 0.903 25 H 0.074 0.926 26 H 0.058 0.942 27 H 0.042 0.958 28 H 0.343 0.657 29 H -0.005 1.005 30 H 0.050 0.950 31 H 0.256 0.744 32 H 0.087 0.913 33 H 0.072 0.928 34 H 0.056 0.944 35 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.250 4.618 -8.692 10.097 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.185 4.185 3 C -0.122 4.122 4 C -0.033 4.033 5 H 0.041 0.959 6 C -0.187 4.187 7 N -0.306 5.306 8 C -0.008 4.008 9 C 0.025 3.975 10 C -0.527 4.527 11 H 0.068 0.932 12 C -0.170 4.170 13 N -0.547 5.547 14 Si 0.765 3.235 15 H -0.191 1.191 16 H -0.215 1.215 17 H -0.203 1.203 18 C -0.223 4.223 19 C -0.208 4.208 20 H 0.122 0.878 21 H 0.113 0.887 22 H 0.116 0.884 23 H 0.092 0.908 24 H 0.115 0.885 25 H 0.093 0.907 26 H 0.077 0.923 27 H 0.061 0.939 28 H 0.163 0.837 29 H 0.013 0.987 30 H 0.068 0.932 31 H 0.065 0.935 32 H 0.105 0.895 33 H 0.091 0.909 34 H 0.074 0.926 35 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 2.407 5.075 -8.472 10.165 hybrid contribution -0.933 -1.693 0.247 1.949 sum 1.474 3.382 -8.225 9.015 Atomic orbital electron populations 1.23945 0.96083 1.02174 1.00681 1.23034 0.96427 0.98793 1.00231 1.20901 0.98169 0.95003 0.98125 1.21599 0.94696 0.97391 0.89620 0.95853 1.21725 0.98835 0.96854 1.01298 1.60524 1.07233 1.59393 1.03494 1.21156 0.94165 0.93811 0.91643 1.18982 0.93907 0.97425 0.87229 1.20513 0.90772 0.92051 1.49396 0.93184 1.25555 1.00568 0.96173 0.94725 1.70095 1.35085 0.98592 1.50962 0.85908 0.82085 0.76538 0.78949 1.19115 1.21547 1.20300 1.22981 1.02114 0.91069 1.06161 1.22428 0.99023 0.96650 1.02655 0.87829 0.88678 0.88426 0.90772 0.88511 0.90712 0.92292 0.93911 0.83698 0.98723 0.93214 0.93451 0.89500 0.90896 0.92576 0.91217 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -5.73 14.30 67.77 0.97 -4.76 16 2 C -0.17 -5.06 8.40 25.64 0.22 -4.84 16 3 C -0.08 -2.34 5.26 29.85 0.16 -2.18 16 4 C 0.08 2.50 2.63 44.91 0.12 2.62 16 5 H 0.02 0.81 7.86 -2.39 -0.02 0.79 16 6 C -0.13 -3.53 9.41 71.98 0.68 -2.85 16 7 N -0.67 -27.68 6.07 -491.59 -2.98 -30.67 16 8 C 0.12 5.56 5.58 86.30 0.48 6.04 16 9 C 0.03 1.25 1.76 -52.93 -0.09 1.16 16 10 C -0.49 -26.45 7.47 25.60 0.19 -26.26 16 11 H 0.05 2.75 7.82 -2.91 -0.02 2.73 16 12 C 0.03 1.61 5.39 84.65 0.46 2.07 16 13 N -0.91 -51.76 12.92 21.45 0.28 -51.48 16 14 Si 0.94 43.28 29.55 68.60 2.03 45.30 16 15 H -0.27 -11.80 7.11 99.48 0.71 -11.09 16 16 H -0.29 -13.27 7.11 99.48 0.71 -12.56 16 17 H -0.28 -12.70 7.11 99.48 0.71 -11.99 16 18 C -0.19 -8.23 9.88 30.60 0.30 -7.93 16 19 C -0.17 -8.18 9.46 30.60 0.29 -7.89 16 20 H 0.10 2.89 7.84 -2.91 -0.02 2.87 16 21 H 0.09 2.74 8.06 -2.91 -0.02 2.71 16 22 H 0.10 3.03 8.06 -2.91 -0.02 3.01 16 23 H 0.07 2.05 7.79 -2.38 -0.02 2.03 16 24 H 0.10 2.14 8.14 -2.39 -0.02 2.12 16 25 H 0.07 1.60 8.14 -2.39 -0.02 1.58 16 26 H 0.06 1.61 8.14 -2.39 -0.02 1.59 16 27 H 0.04 1.23 7.38 -2.39 -0.02 1.22 16 28 H 0.34 15.52 6.34 -89.70 -0.57 14.95 16 29 H -0.01 -0.27 8.14 -2.39 -0.02 -0.29 16 30 H 0.05 2.09 7.13 -2.39 -0.02 2.07 16 31 H 0.26 14.13 8.32 -92.71 -0.77 13.36 16 32 H 0.09 3.40 8.08 -2.39 -0.02 3.38 16 33 H 0.07 3.21 8.14 -2.39 -0.02 3.19 16 34 H 0.06 2.92 8.14 -2.39 -0.02 2.90 16 35 H 0.07 3.16 8.14 -2.39 -0.02 3.14 16 Total: -1.00 -57.54 291.07 3.55 -53.99 By element: Atomic # 1 Polarization: 27.23 SS G_CDS: 0.46 Total: 27.69 kcal Atomic # 6 Polarization: -48.60 SS G_CDS: 3.76 Total: -44.84 kcal Atomic # 7 Polarization: -79.45 SS G_CDS: -2.71 Total: -82.15 kcal Atomic # 14 Polarization: 43.28 SS G_CDS: 2.03 Total: 45.30 kcal Total: -57.54 3.55 -53.99 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000122302824.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.980 kcal (2) G-P(sol) polarization free energy of solvation -57.541 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.440 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.547 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.994 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.986 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds