Wall clock time and date at job start Mon Mar 30 2020 03:08:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30974 * 1 3 3 Si 1.86798 * 119.99494 * 2 1 4 4 H 1.48506 * 109.46989 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.47298 * 299.99364 * 3 2 1 6 6 H 1.48498 * 109.47416 * 59.99400 * 3 2 1 7 7 C 1.39467 * 120.00247 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99694 * 180.02562 * 7 2 1 9 9 N 1.36564 * 119.99843 * 0.28835 * 7 2 1 10 10 N 1.28386 * 119.08659 * 359.44925 * 9 7 2 11 11 C 1.31669 * 122.23016 * 179.71853 * 10 9 7 12 12 C 1.47748 * 119.91331 * 180.26742 * 11 10 9 13 13 O 1.21486 * 119.99959 * 180.28281 * 12 11 10 14 14 O 1.34739 * 120.00453 * 0.28373 * 12 11 10 15 15 C 1.41574 * 120.16894 * 0.55034 * 11 10 9 16 16 C 1.36484 * 118.22159 * 359.73991 * 15 11 10 17 17 C 1.34600 * 119.08599 * 179.72079 * 9 7 2 18 18 O 1.21923 * 120.20011 * 0.02562 * 17 9 7 19 19 H 0.96996 * 120.00506 * 0.02562 * 1 2 3 20 20 H 0.96696 * 117.00384 * 180.02562 * 14 12 11 21 21 H 1.07991 * 120.89003 * 179.75898 * 15 11 10 22 22 H 1.07999 * 121.02281 * 179.97438 * 16 15 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3097 0.0000 0.0000 3 14 2.2436 1.6178 0.0000 4 1 3.7037 1.3465 0.0006 5 1 1.8849 2.3964 -1.2126 6 1 1.8847 2.3966 1.2124 7 6 2.0071 -1.2078 0.0005 8 1 3.0871 -1.2077 0.0010 9 7 1.3243 -2.3905 -0.0049 10 7 0.0407 -2.3701 0.0003 11 6 -0.6792 -3.4725 -0.0098 12 6 -2.1544 -3.3893 -0.0091 13 8 -2.8201 -4.4055 -0.0133 14 8 -2.7613 -2.1863 -0.0038 15 6 -0.0434 -4.7374 -0.0155 16 6 1.3210 -4.7739 -0.0155 17 6 2.0159 -3.5452 -0.0100 18 8 3.2350 -3.5300 -0.0093 19 1 -0.4851 0.8400 -0.0004 20 1 -3.7283 -2.1825 -0.0031 21 1 -0.6224 -5.6490 -0.0199 22 1 1.8526 -5.7140 -0.0193 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000129587877.mol2 22 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:08:58 Heat of formation + Delta-G solvation = -51.033307 kcal Electronic energy + Delta-G solvation = -13573.330975 eV Core-core repulsion = 10902.617274 eV Total energy + Delta-G solvation = -2670.713701 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 210.047 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -40.88297 -39.13463 -36.37049 -35.36960 -34.55998 -32.24966 -30.10394 -26.87657 -24.55439 -22.91276 -21.33117 -18.88749 -18.04404 -16.68924 -15.85453 -15.55214 -15.37306 -15.22385 -14.55513 -14.33798 -13.01935 -12.58804 -12.11024 -12.02634 -11.87343 -11.39118 -11.34357 -10.83698 -10.68176 -10.18429 -10.17665 -9.80550 -9.13493 -8.45960 -7.65538 -6.90243 -4.76269 1.86173 1.97564 2.89986 2.90090 2.99278 3.48008 3.52587 3.76544 4.19295 4.28706 4.99737 5.36876 5.82764 5.94390 6.20256 6.72249 6.85110 6.96758 7.02234 7.14887 7.45491 7.78681 8.28487 8.66788 8.99561 9.63322 9.87411 Molecular weight = 210.05amu Principal moments of inertia in cm(-1) A = 0.030710 B = 0.014066 C = 0.009680 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 911.530406 B = 1990.168741 C = 2891.852564 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.710 5.710 2 C 0.033 3.967 3 Si 0.946 3.054 4 H -0.255 1.255 5 H -0.268 1.268 6 H -0.268 1.268 7 C -0.272 4.272 8 H 0.144 0.856 9 N -0.112 5.112 10 N -0.152 5.152 11 C -0.103 4.103 12 C 0.569 3.431 13 O -0.549 6.549 14 O -0.487 6.487 15 C -0.045 4.045 16 C -0.284 4.284 17 C 0.432 3.568 18 O -0.569 6.569 19 H 0.285 0.715 20 H 0.395 0.605 21 H 0.130 0.870 22 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.984 1.786 -0.005 3.478 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.337 5.337 2 C -0.189 4.189 3 Si 0.768 3.232 4 H -0.179 1.179 5 H -0.193 1.193 6 H -0.193 1.193 7 C -0.414 4.414 8 H 0.162 0.838 9 N 0.083 4.917 10 N -0.002 5.002 11 C -0.243 4.243 12 C 0.416 3.584 13 O -0.441 6.441 14 O -0.294 6.294 15 C -0.071 4.071 16 C -0.312 4.312 17 C 0.240 3.760 18 O -0.455 6.455 19 H 0.097 0.903 20 H 0.250 0.750 21 H 0.148 0.852 22 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -2.499 2.248 0.000 3.361 hybrid contribution -0.305 -0.274 -0.009 0.410 sum -2.804 1.974 -0.008 3.429 Atomic orbital electron populations 1.70205 1.06452 1.29365 1.27651 1.26000 0.95952 1.01117 0.95816 0.85534 0.80224 0.78471 0.78936 1.17878 1.19300 1.19299 1.21037 0.94325 0.80289 1.45727 0.83836 1.43224 1.02660 1.08640 1.37209 1.72638 0.91366 1.24532 1.11621 1.19817 0.90744 0.90331 1.23438 1.19945 0.87354 0.80251 0.70898 1.90794 1.65944 1.37000 1.50380 1.84880 1.26096 1.33071 1.85321 1.21531 0.94448 0.96790 0.94333 1.21708 0.93832 0.97453 1.18165 1.18135 0.89002 0.85344 0.83490 1.90752 1.12803 1.87036 1.54881 0.90317 0.74989 0.85238 0.84185 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.71 -16.88 11.35 55.52 0.63 -16.25 14 2 C 0.03 0.77 5.48 -17.46 -0.10 0.67 14 3 Si 0.95 16.99 29.55 -169.99 -5.02 11.96 14 4 H -0.26 -4.55 7.11 56.52 0.40 -4.15 14 5 H -0.27 -4.71 7.11 56.52 0.40 -4.31 14 6 H -0.27 -4.71 7.11 56.52 0.40 -4.31 14 7 C -0.27 -6.86 9.58 -14.99 -0.14 -7.00 14 8 H 0.14 3.54 7.08 -52.49 -0.37 3.17 14 9 N -0.11 -2.95 3.35 -13.70 -0.05 -3.00 14 10 N -0.15 -3.91 7.96 33.42 0.27 -3.64 14 11 C -0.10 -2.43 6.84 -82.78 -0.57 -2.99 14 12 C 0.57 12.15 8.32 34.62 0.29 12.44 14 13 O -0.55 -11.93 17.17 -19.25 -0.33 -12.26 14 14 O -0.49 -9.14 13.25 -40.60 -0.54 -9.67 14 15 C -0.05 -0.99 9.68 -38.94 -0.38 -1.36 14 16 C -0.28 -6.42 10.11 -39.11 -0.40 -6.81 14 17 C 0.43 11.24 7.41 -15.23 -0.11 11.13 14 18 O -0.57 -15.84 16.60 4.99 0.08 -15.76 14 19 H 0.29 6.06 8.30 -40.82 -0.34 5.72 14 20 H 0.39 4.95 9.11 45.56 0.42 5.36 14 21 H 0.13 2.47 7.72 -52.49 -0.41 2.06 14 22 H 0.14 2.78 8.06 -52.49 -0.42 2.36 14 LS Contribution 218.25 15.07 3.29 3.29 Total: -1.00 -30.36 218.25 -2.99 -33.35 By element: Atomic # 1 Polarization: 5.84 SS G_CDS: 0.08 Total: 5.92 kcal Atomic # 6 Polarization: 7.47 SS G_CDS: -1.40 Total: 6.06 kcal Atomic # 7 Polarization: -23.74 SS G_CDS: 0.85 Total: -22.89 kcal Atomic # 8 Polarization: -36.90 SS G_CDS: -0.79 Total: -37.69 kcal Atomic # 14 Polarization: 16.99 SS G_CDS: -5.02 Total: 11.96 kcal Total LS contribution 3.29 Total: 3.29 kcal Total: -30.36 -2.99 -33.35 kcal The number of atoms in the molecule is 22 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000129587877.mol2 22 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.685 kcal (2) G-P(sol) polarization free energy of solvation -30.357 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.042 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.991 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.348 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.033 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds