Wall clock time and date at job start Mon Mar 30 2020 03:08:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30974 * 1 3 3 Si 1.86798 * 119.99494 * 2 1 4 4 H 1.48506 * 109.46989 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.47298 * 299.99364 * 3 2 1 6 6 H 1.48498 * 109.47416 * 59.99400 * 3 2 1 7 7 C 1.39467 * 120.00247 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99694 * 180.02562 * 7 2 1 9 9 N 1.36564 * 119.99843 * 0.28835 * 7 2 1 10 10 N 1.28386 * 119.08659 * 359.44925 * 9 7 2 11 11 C 1.31669 * 122.23016 * 179.71853 * 10 9 7 12 12 C 1.47748 * 119.91331 * 180.26742 * 11 10 9 13 13 O 1.21486 * 119.99959 * 180.28281 * 12 11 10 14 14 O 1.34739 * 120.00453 * 0.28373 * 12 11 10 15 15 C 1.41574 * 120.16894 * 0.55034 * 11 10 9 16 16 C 1.36484 * 118.22159 * 359.73991 * 15 11 10 17 17 C 1.34600 * 119.08599 * 179.72079 * 9 7 2 18 18 O 1.21923 * 120.20011 * 0.02562 * 17 9 7 19 19 H 0.96996 * 120.00506 * 0.02562 * 1 2 3 20 20 H 0.96696 * 117.00384 * 180.02562 * 14 12 11 21 21 H 1.07991 * 120.89003 * 179.75898 * 15 11 10 22 22 H 1.07999 * 121.02281 * 179.97438 * 16 15 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3097 0.0000 0.0000 3 14 2.2436 1.6178 0.0000 4 1 3.7037 1.3465 0.0006 5 1 1.8849 2.3964 -1.2126 6 1 1.8847 2.3966 1.2124 7 6 2.0071 -1.2078 0.0005 8 1 3.0871 -1.2077 0.0010 9 7 1.3243 -2.3905 -0.0049 10 7 0.0407 -2.3701 0.0003 11 6 -0.6792 -3.4725 -0.0098 12 6 -2.1544 -3.3893 -0.0091 13 8 -2.8201 -4.4055 -0.0133 14 8 -2.7613 -2.1863 -0.0038 15 6 -0.0434 -4.7374 -0.0155 16 6 1.3210 -4.7739 -0.0155 17 6 2.0159 -3.5452 -0.0100 18 8 3.2350 -3.5300 -0.0093 19 1 -0.4851 0.8400 -0.0004 20 1 -3.7283 -2.1825 -0.0031 21 1 -0.6224 -5.6490 -0.0199 22 1 1.8526 -5.7140 -0.0193 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000129587877.mol2 22 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:08:58 Heat of formation + Delta-G solvation = -73.169698 kcal Electronic energy + Delta-G solvation = -13574.290881 eV Core-core repulsion = 10902.617274 eV Total energy + Delta-G solvation = -2671.673607 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 210.047 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -42.76461 -40.80784 -38.32113 -36.99317 -36.33658 -34.04781 -31.99196 -28.70472 -26.38658 -24.72620 -23.08804 -20.71043 -19.79014 -18.37562 -17.65993 -17.40843 -17.24903 -16.98515 -16.27606 -15.93114 -14.66948 -14.33657 -13.83346 -13.80549 -13.72508 -13.14728 -12.93266 -12.41713 -12.08295 -11.96273 -11.88651 -11.63092 -10.85529 -10.35915 -9.56202 -8.64030 -6.64656 0.03094 0.17116 1.39407 1.47234 1.60448 1.74602 1.85255 2.20842 2.48382 2.54420 3.13120 3.57930 4.12116 4.19825 4.52705 4.94734 5.06578 5.20135 5.25791 5.57251 5.68057 5.94586 6.47144 7.04826 7.19239 7.75372 8.18449 Molecular weight = 210.05amu Principal moments of inertia in cm(-1) A = 0.030710 B = 0.014066 C = 0.009680 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 911.530406 B = 1990.168741 C = 2891.852564 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.739 5.739 2 C 0.003 3.997 3 Si 1.021 2.979 4 H -0.258 1.258 5 H -0.257 1.257 6 H -0.257 1.257 7 C -0.312 4.312 8 H 0.135 0.865 9 N -0.125 5.125 10 N -0.173 5.173 11 C -0.109 4.109 12 C 0.578 3.422 13 O -0.550 6.550 14 O -0.488 6.488 15 C -0.041 4.041 16 C -0.273 4.273 17 C 0.401 3.599 18 O -0.608 6.608 19 H 0.296 0.704 20 H 0.423 0.577 21 H 0.163 0.837 22 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.064 2.165 -0.009 4.605 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.366 5.366 2 C -0.217 4.217 3 Si 0.838 3.162 4 H -0.181 1.181 5 H -0.181 1.181 6 H -0.181 1.181 7 C -0.452 4.452 8 H 0.153 0.847 9 N 0.070 4.930 10 N -0.020 5.020 11 C -0.251 4.251 12 C 0.423 3.577 13 O -0.443 6.443 14 O -0.298 6.298 15 C -0.066 4.066 16 C -0.300 4.300 17 C 0.213 3.787 18 O -0.497 6.497 19 H 0.108 0.892 20 H 0.283 0.717 21 H 0.180 0.820 22 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges -3.639 2.643 -0.003 4.497 hybrid contribution -0.161 -0.466 -0.008 0.494 sum -3.800 2.176 -0.011 4.379 Atomic orbital electron populations 1.70225 1.07767 1.31019 1.27565 1.26948 0.96770 1.03605 0.94328 0.84497 0.78507 0.73622 0.79553 1.18106 1.18138 1.18133 1.21327 0.94490 0.81199 1.48168 0.84708 1.43381 1.02917 1.09068 1.37645 1.72619 0.91321 1.25803 1.12263 1.20491 0.92178 0.90805 1.21668 1.19576 0.86544 0.80810 0.70777 1.90798 1.65786 1.37252 1.50416 1.84811 1.28774 1.31674 1.84545 1.21803 0.94178 0.97377 0.93220 1.22014 0.94371 0.97214 1.16449 1.18703 0.89063 0.86430 0.84550 1.90705 1.13959 1.87484 1.57563 0.89212 0.71678 0.81953 0.81478 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.74 -34.87 11.35 21.74 0.25 -34.63 14 2 C 0.00 0.14 5.48 85.12 0.47 0.60 14 3 Si 1.02 34.26 29.55 68.60 2.03 36.29 14 4 H -0.26 -8.64 7.11 99.48 0.71 -7.93 14 5 H -0.26 -8.13 7.11 99.48 0.71 -7.43 14 6 H -0.26 -8.13 7.11 99.48 0.71 -7.42 14 7 C -0.31 -16.12 9.58 84.25 0.81 -15.32 14 8 H 0.14 6.97 7.08 -2.91 -0.02 6.95 14 9 N -0.13 -6.73 3.35 -315.47 -1.06 -7.79 14 10 N -0.17 -8.86 7.96 -48.17 -0.38 -9.25 14 11 C -0.11 -4.99 6.84 42.51 0.29 -4.70 14 12 C 0.58 23.33 8.32 70.34 0.59 23.92 14 13 O -0.55 -22.26 17.17 19.88 0.34 -21.92 14 14 O -0.49 -17.15 13.25 -56.49 -0.75 -17.90 14 15 C -0.04 -1.68 9.68 22.68 0.22 -1.46 14 16 C -0.27 -12.04 10.11 22.58 0.23 -11.81 14 17 C 0.40 21.25 7.41 84.99 0.63 21.88 14 18 O -0.61 -34.85 16.60 -5.06 -0.08 -34.94 14 19 H 0.30 12.30 8.30 -92.71 -0.77 11.53 14 20 H 0.42 9.29 9.11 -74.06 -0.67 8.62 14 21 H 0.16 5.62 7.72 -2.92 -0.02 5.60 14 22 H 0.17 6.32 8.06 -2.91 -0.02 6.29 14 Total: -1.00 -64.99 218.25 4.18 -60.80 By element: Atomic # 1 Polarization: 15.60 SS G_CDS: 0.61 Total: 16.21 kcal Atomic # 6 Polarization: 9.88 SS G_CDS: 3.23 Total: 13.11 kcal Atomic # 7 Polarization: -50.47 SS G_CDS: -1.19 Total: -51.66 kcal Atomic # 8 Polarization: -74.26 SS G_CDS: -0.49 Total: -74.75 kcal Atomic # 14 Polarization: 34.26 SS G_CDS: 2.03 Total: 36.29 kcal Total: -64.99 4.18 -60.80 kcal The number of atoms in the molecule is 22 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000129587877.mol2 22 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.366 kcal (2) G-P(sol) polarization free energy of solvation -64.985 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.351 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.182 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.804 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.170 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds