Wall clock time and date at job start Mon Mar 30 2020 02:32:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09005 * 109.46847 * 2 1 4 4 C 1.50692 * 109.47004 * 119.99813 * 2 1 3 5 5 H 1.08007 * 120.00118 * 114.48403 * 4 2 1 6 6 C 1.37878 * 120.00236 * 294.48525 * 4 2 1 7 7 N 1.31517 * 119.99991 * 164.93353 * 6 4 2 8 8 Si 1.86800 * 119.99946 * 344.93120 * 6 4 2 9 9 H 1.48503 * 109.47015 * 270.00020 * 8 6 4 10 10 H 1.48493 * 109.47087 * 29.99696 * 8 6 4 11 11 H 1.48493 * 109.47006 * 150.00185 * 8 6 4 12 12 N 1.46895 * 109.47209 * 240.00113 * 2 1 3 13 13 C 1.48537 * 111.00070 * 175.40482 * 12 2 1 14 14 C 1.54321 * 104.67137 * 200.80601 * 13 12 2 15 15 H 1.08996 * 112.55103 * 262.01381 * 14 13 12 16 16 C 1.56247 * 109.01594 * 136.38700 * 14 13 12 17 17 C 1.54839 * 104.37307 * 223.49322 * 16 14 13 18 18 C 1.54845 * 102.73476 * 38.63285 * 17 16 14 19 19 C 1.54164 * 104.32356 * 321.81594 * 18 17 16 20 20 H 1.08990 * 111.79868 * 260.36201 * 19 18 17 21 21 C 1.48534 * 111.00289 * 59.99688 * 12 2 1 22 22 H 1.09001 * 109.47164 * 173.18783 * 1 2 3 23 23 H 1.08994 * 109.47265 * 293.18755 * 1 2 3 24 24 H 1.09002 * 109.47128 * 53.19506 * 1 2 3 25 25 H 0.97000 * 119.99771 * 354.90833 * 7 6 4 26 26 H 1.09002 * 110.39529 * 319.60630 * 13 12 2 27 27 H 1.08997 * 110.39335 * 82.00688 * 13 12 2 28 28 H 1.09006 * 110.05949 * 104.95712 * 16 14 13 29 29 H 1.09004 * 110.93143 * 342.47132 * 16 14 13 30 30 H 1.09000 * 110.75967 * 280.32209 * 17 16 14 31 31 H 1.09006 * 110.75814 * 156.94359 * 17 16 14 32 32 H 1.09000 * 110.46268 * 203.10760 * 18 17 16 33 33 H 1.09000 * 110.45841 * 80.52933 * 18 17 16 34 34 H 1.08998 * 110.39954 * 277.99675 * 21 12 2 35 35 H 1.09010 * 110.39072 * 40.39605 * 21 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 1.2304 5 1 2.5778 -1.6375 1.1339 6 6 1.7955 -0.1767 2.4795 7 7 1.9609 -0.9178 3.5533 8 14 1.2399 1.5989 2.6466 9 1 2.4288 2.4802 2.7686 10 1 0.4568 1.9875 1.4462 11 1 0.3924 1.7404 3.8577 12 7 2.0197 -0.6924 -1.1994 13 6 3.5003 -0.6168 -1.2906 14 6 3.8142 -0.8781 -2.7787 15 1 4.0972 -1.9130 -2.9708 16 6 4.9001 0.1388 -3.2562 17 6 4.3989 0.6139 -4.6420 18 6 2.8683 0.7206 -4.4332 19 6 2.5211 -0.4831 -3.5347 20 1 2.1171 -1.3152 -4.1111 21 6 1.5434 -0.0190 -2.4347 22 1 -0.3633 -1.0204 -0.1219 23 1 -0.3633 0.4046 0.9446 24 1 -0.3633 0.6157 -0.8228 25 1 2.1774 -1.8591 3.4643 26 1 3.8489 0.3734 -0.9969 27 1 3.9590 -1.3828 -0.6653 28 1 5.8644 -0.3608 -3.3506 29 1 4.9741 0.9811 -2.5683 30 1 4.6335 -0.1221 -5.4110 31 1 4.8231 1.5860 -4.8938 32 1 2.3474 0.6463 -5.3878 33 1 2.6163 1.6553 -3.9323 34 1 0.5273 -0.3344 -2.6717 35 1 1.5886 1.0640 -2.3184 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000132010177.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:32:15 Heat of formation + Delta-G solvation = -8.661335 kcal Electronic energy + Delta-G solvation = -14486.124157 eV Core-core repulsion = 12290.173037 eV Total energy + Delta-G solvation = -2195.951120 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 209.148 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -39.44661 -35.66390 -32.72960 -30.62682 -30.07114 -27.16775 -25.62629 -24.08783 -21.59285 -20.76800 -19.04754 -18.65434 -17.38462 -16.16778 -14.93857 -14.50166 -14.11203 -13.64459 -13.20873 -13.00209 -12.28493 -12.00438 -11.77288 -11.64464 -11.50721 -10.99547 -10.75624 -10.65396 -10.41055 -10.36645 -10.29069 -10.23061 -10.09873 -9.94573 -9.54975 -8.72990 -8.32698 -7.41629 -6.40144 -4.00629 3.41607 3.43522 3.58996 4.52376 4.62362 4.69159 4.88034 5.19029 5.32569 5.47853 5.52100 5.59985 5.69573 5.73200 5.80519 5.83089 5.99575 6.13830 6.17752 6.30685 6.34436 6.40294 6.42874 6.57937 6.60221 6.65049 6.68825 6.84286 6.92296 7.30040 7.71462 8.03614 8.32028 8.48359 9.03163 9.66944 10.99090 Molecular weight = 209.15amu Principal moments of inertia in cm(-1) A = 0.046038 B = 0.009098 C = 0.008771 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 608.044879 B = 3076.806927 C = 3191.426261 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.178 3.822 3 H -0.008 1.008 4 C -0.585 4.585 5 H 0.062 0.938 6 C 0.030 3.970 7 N -0.910 5.910 8 Si 1.041 2.959 9 H -0.288 1.288 10 H -0.273 1.273 11 H -0.286 1.286 12 N -0.499 5.499 13 C 0.058 3.942 14 C -0.096 4.096 15 H 0.080 0.920 16 C -0.120 4.120 17 C -0.123 4.123 18 C -0.119 4.119 19 C -0.094 4.094 20 H 0.077 0.923 21 C 0.034 3.966 22 H 0.051 0.949 23 H 0.050 0.950 24 H 0.020 0.980 25 H 0.268 0.732 26 H 0.038 0.962 27 H 0.074 0.926 28 H 0.060 0.940 29 H 0.067 0.933 30 H 0.063 0.937 31 H 0.061 0.939 32 H 0.060 0.940 33 H 0.065 0.935 34 H 0.068 0.932 35 H 0.034 0.966 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.388 3.769 -14.620 15.285 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C 0.070 3.930 3 H 0.009 0.991 4 C -0.623 4.623 5 H 0.080 0.920 6 C -0.175 4.175 7 N -0.544 5.544 8 Si 0.869 3.131 9 H -0.215 1.215 10 H -0.198 1.198 11 H -0.212 1.212 12 N -0.222 5.222 13 C -0.071 4.071 14 C -0.115 4.115 15 H 0.099 0.901 16 C -0.158 4.158 17 C -0.161 4.161 18 C -0.157 4.157 19 C -0.113 4.113 20 H 0.096 0.904 21 C -0.095 4.095 22 H 0.070 0.930 23 H 0.069 0.931 24 H 0.039 0.961 25 H 0.078 0.922 26 H 0.056 0.944 27 H 0.093 0.907 28 H 0.079 0.921 29 H 0.085 0.915 30 H 0.082 0.918 31 H 0.080 0.920 32 H 0.079 0.921 33 H 0.084 0.916 34 H 0.086 0.914 35 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges 1.814 4.394 -13.424 14.241 hybrid contribution 0.586 -0.370 -1.042 1.252 sum 2.401 4.024 -14.466 15.206 Atomic orbital electron populations 1.22156 0.98269 1.00172 0.98978 1.19790 0.91883 0.92060 0.89261 0.99065 1.21967 1.39341 1.10640 0.90345 0.91975 1.25672 0.94602 1.05184 0.92031 1.70795 1.44645 1.08341 1.30651 0.84156 0.77127 0.75916 0.75902 1.21514 1.19834 1.21151 1.65399 1.05546 1.49936 1.01366 1.22929 0.90257 1.00193 0.93687 1.22939 0.94111 0.98632 0.95783 0.90148 1.22852 0.97967 0.98581 0.96406 1.22483 0.95775 1.00506 0.97334 1.22496 0.95774 0.98248 0.99179 1.22498 0.95844 0.97137 0.95826 0.90430 1.23227 0.98444 0.96306 0.91485 0.93027 0.93065 0.96141 0.92190 0.94402 0.90734 0.92133 0.91453 0.91806 0.92040 0.92111 0.91624 0.91357 0.94770 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.16 8.15 37.16 0.30 -2.86 16 2 C 0.18 4.39 1.38 -68.87 -0.09 4.30 16 3 H -0.01 -0.20 6.61 -51.93 -0.34 -0.55 16 4 C -0.58 -16.74 8.38 -34.44 -0.29 -17.03 16 5 H 0.06 1.94 7.68 -52.48 -0.40 1.54 16 6 C 0.03 0.87 5.33 -17.82 -0.09 0.77 16 7 N -0.91 -28.33 13.70 55.43 0.76 -27.57 16 8 Si 1.04 25.55 26.17 -169.99 -4.45 21.10 16 9 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 10 H -0.27 -6.19 5.53 56.52 0.31 -5.87 16 11 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 12 N -0.50 -10.91 5.19 -223.53 -1.16 -12.07 16 13 C 0.06 1.15 5.38 -2.23 -0.01 1.14 16 14 C -0.10 -1.50 4.04 -87.18 -0.35 -1.85 16 15 H 0.08 1.21 8.14 -51.93 -0.42 0.79 16 16 C -0.12 -1.59 6.41 -24.02 -0.15 -1.74 16 17 C -0.12 -1.41 6.90 -24.79 -0.17 -1.58 16 18 C -0.12 -1.49 6.36 -25.15 -0.16 -1.65 16 19 C -0.09 -1.41 3.87 -88.32 -0.34 -1.75 16 20 H 0.08 1.10 8.14 -51.93 -0.42 0.68 16 21 C 0.03 0.61 4.91 -2.23 -0.01 0.60 16 22 H 0.05 1.19 8.14 -51.93 -0.42 0.76 16 23 H 0.05 1.20 5.06 -51.93 -0.26 0.93 16 24 H 0.02 0.40 7.31 -51.93 -0.38 0.02 16 25 H 0.27 8.35 8.73 -40.82 -0.36 7.99 16 26 H 0.04 0.78 6.99 -51.93 -0.36 0.42 16 27 H 0.07 1.60 7.75 -51.93 -0.40 1.20 16 28 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 29 H 0.07 0.95 7.26 -51.93 -0.38 0.57 16 30 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 31 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 32 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 33 H 0.07 0.86 7.18 -51.93 -0.37 0.48 16 34 H 0.07 1.19 7.81 -51.93 -0.41 0.79 16 35 H 0.03 0.62 7.02 -51.92 -0.36 0.26 16 LS Contribution 262.30 15.07 3.95 3.95 Total: -1.00 -30.16 262.30 -8.15 -38.31 By element: Atomic # 1 Polarization: 3.82 SS G_CDS: -5.87 Total: -2.06 kcal Atomic # 6 Polarization: -20.28 SS G_CDS: -1.38 Total: -21.66 kcal Atomic # 7 Polarization: -39.25 SS G_CDS: -0.40 Total: -39.65 kcal Atomic # 14 Polarization: 25.55 SS G_CDS: -4.45 Total: 21.10 kcal Total LS contribution 3.95 Total: 3.95 kcal Total: -30.16 -8.15 -38.31 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000132010177.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.649 kcal (2) G-P(sol) polarization free energy of solvation -30.162 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.513 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.148 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.310 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.661 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds