Wall clock time and date at job start Mon Mar 30 2020 02:32:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09005 * 109.46847 * 2 1 4 4 C 1.50692 * 109.47004 * 119.99813 * 2 1 3 5 5 H 1.08007 * 120.00118 * 114.48403 * 4 2 1 6 6 C 1.37878 * 120.00236 * 294.48525 * 4 2 1 7 7 N 1.31517 * 119.99991 * 164.93353 * 6 4 2 8 8 Si 1.86800 * 119.99946 * 344.93120 * 6 4 2 9 9 H 1.48503 * 109.47015 * 270.00020 * 8 6 4 10 10 H 1.48493 * 109.47087 * 29.99696 * 8 6 4 11 11 H 1.48493 * 109.47006 * 150.00185 * 8 6 4 12 12 N 1.46895 * 109.47209 * 240.00113 * 2 1 3 13 13 C 1.48537 * 111.00070 * 175.40482 * 12 2 1 14 14 C 1.54321 * 104.67137 * 200.80601 * 13 12 2 15 15 H 1.08996 * 112.55103 * 262.01381 * 14 13 12 16 16 C 1.56247 * 109.01594 * 136.38700 * 14 13 12 17 17 C 1.54839 * 104.37307 * 223.49322 * 16 14 13 18 18 C 1.54845 * 102.73476 * 38.63285 * 17 16 14 19 19 C 1.54164 * 104.32356 * 321.81594 * 18 17 16 20 20 H 1.08990 * 111.79868 * 260.36201 * 19 18 17 21 21 C 1.48534 * 111.00289 * 59.99688 * 12 2 1 22 22 H 1.09001 * 109.47164 * 173.18783 * 1 2 3 23 23 H 1.08994 * 109.47265 * 293.18755 * 1 2 3 24 24 H 1.09002 * 109.47128 * 53.19506 * 1 2 3 25 25 H 0.97000 * 119.99771 * 354.90833 * 7 6 4 26 26 H 1.09002 * 110.39529 * 319.60630 * 13 12 2 27 27 H 1.08997 * 110.39335 * 82.00688 * 13 12 2 28 28 H 1.09006 * 110.05949 * 104.95712 * 16 14 13 29 29 H 1.09004 * 110.93143 * 342.47132 * 16 14 13 30 30 H 1.09000 * 110.75967 * 280.32209 * 17 16 14 31 31 H 1.09006 * 110.75814 * 156.94359 * 17 16 14 32 32 H 1.09000 * 110.46268 * 203.10760 * 18 17 16 33 33 H 1.09000 * 110.45841 * 80.52933 * 18 17 16 34 34 H 1.08998 * 110.39954 * 277.99675 * 21 12 2 35 35 H 1.09010 * 110.39072 * 40.39605 * 21 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 1.2304 5 1 2.5778 -1.6375 1.1339 6 6 1.7955 -0.1767 2.4795 7 7 1.9609 -0.9178 3.5533 8 14 1.2399 1.5989 2.6466 9 1 2.4288 2.4802 2.7686 10 1 0.4568 1.9875 1.4462 11 1 0.3924 1.7404 3.8577 12 7 2.0197 -0.6924 -1.1994 13 6 3.5003 -0.6168 -1.2906 14 6 3.8142 -0.8781 -2.7787 15 1 4.0972 -1.9130 -2.9708 16 6 4.9001 0.1388 -3.2562 17 6 4.3989 0.6139 -4.6420 18 6 2.8683 0.7206 -4.4332 19 6 2.5211 -0.4831 -3.5347 20 1 2.1171 -1.3152 -4.1111 21 6 1.5434 -0.0190 -2.4347 22 1 -0.3633 -1.0204 -0.1219 23 1 -0.3633 0.4046 0.9446 24 1 -0.3633 0.6157 -0.8228 25 1 2.1774 -1.8591 3.4643 26 1 3.8489 0.3734 -0.9969 27 1 3.9590 -1.3828 -0.6653 28 1 5.8644 -0.3608 -3.3506 29 1 4.9741 0.9811 -2.5683 30 1 4.6335 -0.1221 -5.4110 31 1 4.8231 1.5860 -4.8938 32 1 2.3474 0.6463 -5.3878 33 1 2.6163 1.6553 -3.9323 34 1 0.5273 -0.3344 -2.6717 35 1 1.5886 1.0640 -2.3184 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000132010177.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:32:15 Heat of formation + Delta-G solvation = -28.939924 kcal Electronic energy + Delta-G solvation = -14487.003502 eV Core-core repulsion = 12290.173037 eV Total energy + Delta-G solvation = -2196.830465 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 209.148 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.81163 -37.25368 -34.72746 -32.38180 -31.35857 -28.59992 -27.28316 -25.83847 -23.23452 -21.91504 -20.78338 -19.99461 -19.48485 -17.52660 -16.50412 -15.85984 -15.66551 -15.32662 -14.76654 -14.48077 -14.04252 -13.82913 -13.46903 -13.12150 -12.95242 -12.56310 -12.30967 -12.07055 -11.91619 -11.78667 -11.60934 -11.53693 -11.41306 -11.38104 -11.29679 -10.90411 -10.56844 -9.15410 -8.75506 -6.36677 1.43143 1.48119 1.67078 2.46868 3.04177 3.27564 3.54999 3.65772 3.87497 4.26402 4.40013 4.42622 4.48609 4.52703 4.55831 4.60481 4.74988 4.76955 4.80875 4.87233 4.99106 5.01044 5.05601 5.09967 5.17943 5.24145 5.31925 5.41665 5.51744 5.53465 5.81904 6.02609 6.17247 6.44058 6.71070 7.40897 8.62292 Molecular weight = 209.15amu Principal moments of inertia in cm(-1) A = 0.046038 B = 0.009098 C = 0.008771 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 608.044879 B = 3076.806927 C = 3191.426261 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.179 3.821 3 H -0.010 1.010 4 C -0.585 4.585 5 H 0.017 0.983 6 C -0.022 4.022 7 N -0.941 5.941 8 Si 1.082 2.918 9 H -0.276 1.276 10 H -0.240 1.240 11 H -0.283 1.283 12 N -0.522 5.522 13 C 0.057 3.943 14 C -0.093 4.093 15 H 0.085 0.915 16 C -0.118 4.118 17 C -0.115 4.115 18 C -0.115 4.115 19 C -0.089 4.089 20 H 0.090 0.910 21 C 0.033 3.967 22 H 0.042 0.958 23 H 0.045 0.955 24 H 0.054 0.946 25 H 0.251 0.749 26 H 0.026 0.974 27 H 0.041 0.959 28 H 0.073 0.927 29 H 0.055 0.945 30 H 0.080 0.920 31 H 0.077 0.923 32 H 0.084 0.916 33 H 0.060 0.940 34 H 0.075 0.925 35 H 0.036 0.964 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.924 5.629 -17.432 18.419 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.070 3.930 3 H 0.008 0.992 4 C -0.624 4.624 5 H 0.035 0.965 6 C -0.220 4.220 7 N -0.577 5.577 8 Si 0.903 3.097 9 H -0.202 1.202 10 H -0.163 1.163 11 H -0.208 1.208 12 N -0.246 5.246 13 C -0.071 4.071 14 C -0.112 4.112 15 H 0.103 0.897 16 C -0.156 4.156 17 C -0.152 4.152 18 C -0.152 4.152 19 C -0.108 4.108 20 H 0.108 0.892 21 C -0.095 4.095 22 H 0.061 0.939 23 H 0.064 0.936 24 H 0.073 0.927 25 H 0.060 0.940 26 H 0.045 0.955 27 H 0.059 0.941 28 H 0.092 0.908 29 H 0.073 0.927 30 H 0.098 0.902 31 H 0.096 0.904 32 H 0.102 0.898 33 H 0.078 0.922 34 H 0.094 0.906 35 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges 1.357 6.238 -16.272 17.480 hybrid contribution 0.785 -1.070 -0.174 1.338 sum 2.142 5.168 -16.446 17.372 Atomic orbital electron populations 1.22050 0.96580 1.00423 1.00072 1.19650 0.93082 0.91354 0.88869 0.99227 1.22120 1.38415 1.09081 0.92742 0.96481 1.27169 0.94211 1.08873 0.91706 1.70929 1.47337 1.07684 1.31764 0.83657 0.77709 0.71001 0.77330 1.20249 1.16317 1.20843 1.65285 1.06635 1.50618 1.02022 1.22902 0.89303 0.98383 0.96554 1.22930 0.95895 0.99840 0.92489 0.89692 1.22831 0.97804 0.97516 0.97476 1.22471 0.94767 1.01834 0.96148 1.22476 0.96804 0.96467 0.99480 1.22530 0.94227 0.98755 0.95281 0.89211 1.23339 0.99611 0.96163 0.90405 0.93867 0.93572 0.92743 0.94003 0.95532 0.94086 0.90804 0.92651 0.90156 0.90386 0.89773 0.92174 0.90628 0.94557 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.90 8.15 71.98 0.59 -5.31 16 2 C 0.18 8.80 1.38 44.17 0.06 8.86 16 3 H -0.01 -0.48 6.61 -2.38 -0.02 -0.49 16 4 C -0.59 -34.69 8.38 25.60 0.21 -34.48 16 5 H 0.02 1.13 7.68 -2.91 -0.02 1.10 16 6 C -0.02 -1.32 5.33 84.65 0.45 -0.87 16 7 N -0.94 -60.72 13.70 21.45 0.29 -60.43 16 8 Si 1.08 51.03 26.17 68.60 1.79 52.83 16 9 H -0.28 -12.46 7.11 99.48 0.71 -11.76 16 10 H -0.24 -9.95 5.53 99.48 0.55 -9.40 16 11 H -0.28 -13.17 7.11 99.48 0.71 -12.47 16 12 N -0.52 -22.78 5.19 -861.11 -4.47 -27.25 16 13 C 0.06 2.31 5.38 86.43 0.46 2.78 16 14 C -0.09 -2.77 4.04 -8.57 -0.03 -2.80 16 15 H 0.08 2.45 8.14 -2.39 -0.02 2.43 16 16 C -0.12 -2.85 6.41 32.35 0.21 -2.65 16 17 C -0.11 -2.15 6.90 31.85 0.22 -1.93 16 18 C -0.11 -2.39 6.36 31.62 0.20 -2.19 16 19 C -0.09 -2.40 3.87 -9.30 -0.04 -2.44 16 20 H 0.09 2.24 8.14 -2.39 -0.02 2.22 16 21 C 0.03 1.10 4.91 86.43 0.42 1.53 16 22 H 0.04 1.94 8.14 -2.39 -0.02 1.92 16 23 H 0.05 2.06 5.06 -2.39 -0.01 2.05 16 24 H 0.05 2.02 7.31 -2.39 -0.02 2.00 16 25 H 0.25 16.54 8.73 -92.71 -0.81 15.74 16 26 H 0.03 1.12 6.99 -2.39 -0.02 1.10 16 27 H 0.04 1.88 7.75 -2.39 -0.02 1.86 16 28 H 0.07 1.58 8.14 -2.38 -0.02 1.56 16 29 H 0.05 1.47 7.26 -2.39 -0.02 1.45 16 30 H 0.08 1.28 8.14 -2.39 -0.02 1.27 16 31 H 0.08 1.26 8.14 -2.38 -0.02 1.24 16 32 H 0.08 1.41 8.14 -2.39 -0.02 1.39 16 33 H 0.06 1.34 7.18 -2.39 -0.02 1.33 16 34 H 0.08 2.42 7.81 -2.39 -0.02 2.41 16 35 H 0.04 1.22 7.02 -2.38 -0.02 1.20 16 Total: -1.00 -67.44 262.30 1.23 -66.21 By element: Atomic # 1 Polarization: 7.30 SS G_CDS: 0.85 Total: 8.15 kcal Atomic # 6 Polarization: -42.27 SS G_CDS: 2.76 Total: -39.51 kcal Atomic # 7 Polarization: -83.51 SS G_CDS: -4.17 Total: -87.68 kcal Atomic # 14 Polarization: 51.03 SS G_CDS: 1.79 Total: 52.83 kcal Total: -67.44 1.23 -66.21 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000132010177.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.275 kcal (2) G-P(sol) polarization free energy of solvation -67.442 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.167 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.227 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.215 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.940 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds