Wall clock time and date at job start Mon Mar 30 2020 02:32:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.08998 * 109.47084 * 2 1 4 4 C 1.50700 * 109.47009 * 239.99631 * 2 1 3 5 5 H 1.07998 * 120.00186 * 274.98885 * 4 2 1 6 6 C 1.37878 * 119.99933 * 94.99516 * 4 2 1 7 7 N 1.31511 * 120.00170 * 184.86368 * 6 4 2 8 8 Si 1.86797 * 119.99849 * 4.85555 * 6 4 2 9 9 H 1.48500 * 109.46973 * 84.73965 * 8 6 4 10 10 H 1.48498 * 109.47101 * 204.73540 * 8 6 4 11 11 H 1.48504 * 109.47515 * 324.73608 * 8 6 4 12 12 N 1.46902 * 109.46911 * 119.99890 * 2 1 3 13 13 C 1.49589 * 110.99913 * 299.99944 * 12 2 1 14 14 C 1.50490 * 104.85541 * 245.48026 * 13 12 2 15 15 H 1.09006 * 110.54009 * 81.29487 * 14 13 12 16 16 C 1.51340 * 124.88364 * 216.69617 * 14 13 12 17 17 C 1.56502 * 101.32082 * 156.48319 * 16 14 13 18 18 C 1.56127 * 105.61418 * 333.89762 * 17 16 14 19 19 C 1.50535 * 103.94800 * 352.64913 * 18 17 16 20 20 H 1.09000 * 110.11692 * 280.15028 * 19 18 17 21 21 C 1.50146 * 110.95804 * 180.33859 * 12 2 1 22 22 H 1.08998 * 109.47045 * 295.37876 * 1 2 3 23 23 H 1.08995 * 109.46891 * 55.37806 * 1 2 3 24 24 H 1.09004 * 109.46925 * 175.37838 * 1 2 3 25 25 H 0.96991 * 120.00229 * 179.97438 * 7 6 4 26 26 H 1.08993 * 110.36271 * 126.63476 * 13 12 2 27 27 H 1.09002 * 110.36038 * 4.32572 * 13 12 2 28 28 H 1.08992 * 111.05970 * 38.46008 * 16 14 13 29 29 H 1.08999 * 111.05959 * 274.49953 * 16 14 13 30 30 H 1.09002 * 110.22227 * 92.93881 * 17 16 14 31 31 H 1.09002 * 110.21628 * 214.78422 * 17 16 14 32 32 H 1.09008 * 110.53049 * 111.26347 * 18 17 16 33 33 H 1.08995 * 110.53649 * 233.88902 * 18 17 16 34 34 H 1.09009 * 110.83680 * 28.83769 * 21 12 2 35 35 H 1.08998 * 110.79765 * 265.25111 * 21 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7105 -1.2304 5 1 2.1357 -1.7855 -1.2289 6 6 2.3602 0.0120 -2.3581 7 7 2.7068 -0.6133 -3.4619 8 14 2.3117 1.8789 -2.3181 9 1 3.5957 2.3959 -1.7802 10 1 2.1065 2.3983 -3.6940 11 1 1.1945 2.3266 -1.4482 12 7 2.0197 -0.6925 1.1995 13 6 1.5400 -0.0141 2.4434 14 6 2.7867 0.5150 3.0996 15 1 3.0899 1.4565 2.6414 16 6 3.0275 0.5575 4.5931 17 6 4.5912 0.5832 4.6516 18 6 5.0723 -0.1054 3.3356 19 6 3.8052 -0.6344 2.7187 20 1 3.5146 -1.5676 3.2011 21 6 3.5206 -0.7048 1.2374 22 1 -0.3633 0.4405 0.9285 23 1 -0.3633 0.5839 -0.8457 24 1 -0.3633 -1.0244 -0.0828 25 1 2.9371 -0.1051 -4.2553 26 1 1.0416 -0.7295 3.0974 27 1 0.8663 0.8053 2.1928 28 1 2.6319 -0.3343 5.0791 29 1 2.6042 1.4607 5.0325 30 1 4.9498 1.6117 4.6916 31 1 4.9448 0.0274 5.5201 32 1 5.5450 0.6213 2.6747 33 1 5.7602 -0.9205 3.5600 34 1 3.9287 0.1648 0.7220 35 1 3.9110 -1.6287 0.8107 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000132010818.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:32:21 Heat of formation + Delta-G solvation = 8.365871 kcal Electronic energy + Delta-G solvation = -14524.220289 eV Core-core repulsion = 12329.007524 eV Total energy + Delta-G solvation = -2195.212765 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 209.148 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -39.86005 -35.76388 -32.65171 -30.77745 -29.89781 -26.78447 -26.13954 -24.61723 -21.84376 -20.12055 -19.38755 -18.82980 -17.04639 -15.67140 -14.89117 -14.43419 -14.24352 -13.80676 -13.33241 -12.80983 -12.48965 -12.13508 -11.94900 -11.61108 -11.32888 -11.09009 -11.01326 -10.76374 -10.61948 -10.41400 -10.33237 -10.08607 -9.99423 -9.73096 -9.48327 -9.08096 -8.56030 -7.27934 -6.06856 -4.04945 3.25266 3.34433 3.35964 4.35016 4.40405 4.70096 4.91904 5.09274 5.30226 5.40520 5.46902 5.56001 5.68376 5.87089 5.90319 5.93660 6.04893 6.17793 6.23463 6.29041 6.30750 6.40740 6.57568 6.58964 6.61910 6.65171 6.82520 6.91264 6.94131 7.27393 7.62029 7.98929 8.05152 8.68403 9.04966 9.57343 11.06527 Molecular weight = 209.15amu Principal moments of inertia in cm(-1) A = 0.039943 B = 0.009887 C = 0.009379 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 700.826690 B = 2831.216211 C = 2984.811205 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.172 3.828 3 H 0.000 1.000 4 C -0.498 4.498 5 H 0.080 0.920 6 C 0.071 3.929 7 N -0.898 5.898 8 Si 0.871 3.129 9 H -0.278 1.278 10 H -0.288 1.288 11 H -0.267 1.267 12 N -0.513 5.513 13 C 0.047 3.953 14 C -0.137 4.137 15 H 0.068 0.932 16 C -0.103 4.103 17 C -0.122 4.122 18 C -0.106 4.106 19 C -0.119 4.119 20 H 0.077 0.923 21 C 0.078 3.922 22 H 0.024 0.976 23 H 0.044 0.956 24 H 0.054 0.946 25 H 0.263 0.737 26 H 0.066 0.934 27 H 0.054 0.946 28 H 0.067 0.933 29 H 0.059 0.941 30 H 0.060 0.940 31 H 0.061 0.939 32 H 0.063 0.937 33 H 0.062 0.938 34 H 0.044 0.956 35 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.809 3.522 14.013 14.562 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.065 3.935 3 H 0.017 0.983 4 C -0.537 4.537 5 H 0.098 0.902 6 C -0.131 4.131 7 N -0.537 5.537 8 Si 0.698 3.302 9 H -0.204 1.204 10 H -0.214 1.214 11 H -0.192 1.192 12 N -0.238 5.238 13 C -0.080 4.080 14 C -0.157 4.157 15 H 0.087 0.913 16 C -0.141 4.141 17 C -0.160 4.160 18 C -0.144 4.144 19 C -0.138 4.138 20 H 0.095 0.905 21 C -0.049 4.049 22 H 0.043 0.957 23 H 0.063 0.937 24 H 0.073 0.927 25 H 0.073 0.927 26 H 0.084 0.916 27 H 0.073 0.927 28 H 0.086 0.914 29 H 0.078 0.922 30 H 0.079 0.921 31 H 0.080 0.920 32 H 0.082 0.918 33 H 0.081 0.919 34 H 0.062 0.938 35 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 1.645 3.027 13.753 14.178 hybrid contribution 0.322 1.943 -0.189 1.979 sum 1.967 4.970 13.564 14.579 Atomic orbital electron populations 1.21992 0.97934 1.01063 0.98196 1.19903 0.92243 0.92050 0.89339 0.98278 1.20909 1.42800 0.95905 0.94053 0.90179 1.24999 0.94792 0.97808 0.95454 1.69887 1.46565 1.35564 1.01644 0.86967 0.78912 0.87129 0.77155 1.20405 1.21409 1.19178 1.65339 1.06778 1.50566 1.01092 1.22219 0.95346 0.97150 0.93327 1.22666 0.98104 0.99036 0.95876 0.91321 1.21837 0.95484 1.01319 0.95445 1.23019 0.95264 1.00229 0.97467 1.21563 0.96890 0.99734 0.96255 1.22364 0.95282 0.98496 0.97705 0.90470 1.22047 0.89080 1.01539 0.92266 0.95677 0.93687 0.92695 0.92670 0.91561 0.92712 0.91413 0.92187 0.92080 0.92049 0.91815 0.91882 0.93786 0.90502 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.96 9.13 37.16 0.34 -2.62 16 2 C 0.17 4.16 1.41 -68.86 -0.10 4.06 16 3 H 0.00 -0.01 5.26 -51.93 -0.27 -0.28 16 4 C -0.50 -14.08 8.26 -34.44 -0.28 -14.36 16 5 H 0.08 2.50 8.06 -52.49 -0.42 2.08 16 6 C 0.07 2.06 5.47 -17.82 -0.10 1.96 16 7 N -0.90 -27.47 13.96 55.43 0.77 -26.70 16 8 Si 0.87 21.75 26.98 -169.99 -4.59 17.16 16 9 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 10 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 11 H -0.27 -6.44 6.83 56.52 0.39 -6.05 16 12 N -0.51 -11.04 5.14 -225.58 -1.16 -12.20 16 13 C 0.05 0.84 6.08 -3.58 -0.02 0.82 16 14 C -0.14 -2.14 2.82 -89.83 -0.25 -2.40 16 15 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 16 C -0.10 -1.27 6.69 -25.68 -0.17 -1.44 16 17 C -0.12 -1.41 6.96 -23.17 -0.16 -1.57 16 18 C -0.11 -1.41 6.70 -26.29 -0.18 -1.59 16 19 C -0.12 -1.91 2.84 -89.98 -0.26 -2.17 16 20 H 0.08 1.23 8.13 -51.93 -0.42 0.81 16 21 C 0.08 1.58 5.70 -3.01 -0.02 1.56 16 22 H 0.02 0.48 6.20 -51.93 -0.32 0.16 16 23 H 0.04 1.00 8.14 -51.93 -0.42 0.58 16 24 H 0.05 1.22 8.14 -51.93 -0.42 0.79 16 25 H 0.26 7.57 8.31 -40.82 -0.34 7.23 16 26 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 27 H 0.05 0.98 6.10 -51.93 -0.32 0.66 16 28 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 29 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 30 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 31 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 32 H 0.06 0.87 8.14 -51.92 -0.42 0.45 16 33 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 34 H 0.04 0.96 7.86 -51.92 -0.41 0.55 16 35 H 0.08 1.63 8.14 -51.93 -0.42 1.20 16 LS Contribution 268.65 15.07 4.05 4.05 Total: -1.00 -29.54 268.65 -8.09 -37.62 By element: Atomic # 1 Polarization: 3.78 SS G_CDS: -5.97 Total: -2.18 kcal Atomic # 6 Polarization: -16.55 SS G_CDS: -1.20 Total: -17.74 kcal Atomic # 7 Polarization: -38.52 SS G_CDS: -0.39 Total: -38.90 kcal Atomic # 14 Polarization: 21.75 SS G_CDS: -4.59 Total: 17.16 kcal Total LS contribution 4.05 Total: 4.05 kcal Total: -29.54 -8.09 -37.62 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000132010818.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.989 kcal (2) G-P(sol) polarization free energy of solvation -29.537 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.453 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.087 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.623 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.366 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds