Wall clock time and date at job start Mon Mar 30 2020 02:32:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.08998 * 109.47084 * 2 1 4 4 C 1.50700 * 109.47009 * 239.99631 * 2 1 3 5 5 H 1.07998 * 120.00186 * 274.98885 * 4 2 1 6 6 C 1.37878 * 119.99933 * 94.99516 * 4 2 1 7 7 N 1.31511 * 120.00170 * 184.86368 * 6 4 2 8 8 Si 1.86797 * 119.99849 * 4.85555 * 6 4 2 9 9 H 1.48500 * 109.46973 * 84.73965 * 8 6 4 10 10 H 1.48498 * 109.47101 * 204.73540 * 8 6 4 11 11 H 1.48504 * 109.47515 * 324.73608 * 8 6 4 12 12 N 1.46902 * 109.46911 * 119.99890 * 2 1 3 13 13 C 1.49589 * 110.99913 * 299.99944 * 12 2 1 14 14 C 1.50490 * 104.85541 * 245.48026 * 13 12 2 15 15 H 1.09006 * 110.54009 * 81.29487 * 14 13 12 16 16 C 1.51340 * 124.88364 * 216.69617 * 14 13 12 17 17 C 1.56502 * 101.32082 * 156.48319 * 16 14 13 18 18 C 1.56127 * 105.61418 * 333.89762 * 17 16 14 19 19 C 1.50535 * 103.94800 * 352.64913 * 18 17 16 20 20 H 1.09000 * 110.11692 * 280.15028 * 19 18 17 21 21 C 1.50146 * 110.95804 * 180.33859 * 12 2 1 22 22 H 1.08998 * 109.47045 * 295.37876 * 1 2 3 23 23 H 1.08995 * 109.46891 * 55.37806 * 1 2 3 24 24 H 1.09004 * 109.46925 * 175.37838 * 1 2 3 25 25 H 0.96991 * 120.00229 * 179.97438 * 7 6 4 26 26 H 1.08993 * 110.36271 * 126.63476 * 13 12 2 27 27 H 1.09002 * 110.36038 * 4.32572 * 13 12 2 28 28 H 1.08992 * 111.05970 * 38.46008 * 16 14 13 29 29 H 1.08999 * 111.05959 * 274.49953 * 16 14 13 30 30 H 1.09002 * 110.22227 * 92.93881 * 17 16 14 31 31 H 1.09002 * 110.21628 * 214.78422 * 17 16 14 32 32 H 1.09008 * 110.53049 * 111.26347 * 18 17 16 33 33 H 1.08995 * 110.53649 * 233.88902 * 18 17 16 34 34 H 1.09009 * 110.83680 * 28.83769 * 21 12 2 35 35 H 1.08998 * 110.79765 * 265.25111 * 21 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7105 -1.2304 5 1 2.1357 -1.7855 -1.2289 6 6 2.3602 0.0120 -2.3581 7 7 2.7068 -0.6133 -3.4619 8 14 2.3117 1.8789 -2.3181 9 1 3.5957 2.3959 -1.7802 10 1 2.1065 2.3983 -3.6940 11 1 1.1945 2.3266 -1.4482 12 7 2.0197 -0.6925 1.1995 13 6 1.5400 -0.0141 2.4434 14 6 2.7867 0.5150 3.0996 15 1 3.0899 1.4565 2.6414 16 6 3.0275 0.5575 4.5931 17 6 4.5912 0.5832 4.6516 18 6 5.0723 -0.1054 3.3356 19 6 3.8052 -0.6344 2.7187 20 1 3.5146 -1.5676 3.2011 21 6 3.5206 -0.7048 1.2374 22 1 -0.3633 0.4405 0.9285 23 1 -0.3633 0.5839 -0.8457 24 1 -0.3633 -1.0244 -0.0828 25 1 2.9371 -0.1051 -4.2553 26 1 1.0416 -0.7295 3.0974 27 1 0.8663 0.8053 2.1928 28 1 2.6319 -0.3343 5.0791 29 1 2.6042 1.4607 5.0325 30 1 4.9498 1.6117 4.6916 31 1 4.9448 0.0274 5.5201 32 1 5.5450 0.6213 2.6747 33 1 5.7602 -0.9205 3.5600 34 1 3.9287 0.1648 0.7220 35 1 3.9110 -1.6287 0.8107 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000132010818.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:32:20 Heat of formation + Delta-G solvation = -10.868281 kcal Electronic energy + Delta-G solvation = -14525.054344 eV Core-core repulsion = 12329.007524 eV Total energy + Delta-G solvation = -2196.046820 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 209.148 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -41.21084 -37.32849 -34.64298 -32.54132 -31.20233 -28.20950 -27.77512 -26.36165 -23.33783 -21.51825 -20.61109 -20.44208 -19.18938 -17.19979 -16.42093 -16.05284 -15.50226 -15.35547 -14.91500 -14.59619 -14.26281 -13.76832 -13.35844 -12.97948 -12.89242 -12.79573 -12.62871 -12.13252 -12.06530 -11.95706 -11.85766 -11.61828 -11.46992 -11.26165 -11.12964 -10.80758 -10.75195 -8.99331 -8.31577 -6.34384 1.26845 1.28425 1.39189 2.28838 2.97827 3.12679 3.27901 3.82073 3.98873 4.22940 4.31067 4.41184 4.46602 4.53403 4.60687 4.72942 4.77253 4.78211 4.84137 4.92972 4.95383 5.04808 5.11407 5.15780 5.21259 5.24427 5.35469 5.42122 5.54615 5.55139 5.67349 6.07712 6.21425 6.65325 6.73903 7.31861 8.85789 Molecular weight = 209.15amu Principal moments of inertia in cm(-1) A = 0.039943 B = 0.009887 C = 0.009379 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 700.826690 B = 2831.216211 C = 2984.811205 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C 0.175 3.825 3 H -0.005 1.005 4 C -0.499 4.499 5 H 0.031 0.969 6 C 0.014 3.986 7 N -0.946 5.946 8 Si 0.935 3.065 9 H -0.272 1.272 10 H -0.282 1.282 11 H -0.248 1.248 12 N -0.532 5.532 13 C 0.047 3.953 14 C -0.131 4.131 15 H 0.056 0.944 16 C -0.096 4.096 17 C -0.114 4.114 18 C -0.107 4.107 19 C -0.114 4.114 20 H 0.081 0.919 21 C 0.076 3.924 22 H 0.058 0.942 23 H 0.040 0.960 24 H 0.045 0.955 25 H 0.266 0.734 26 H 0.083 0.917 27 H 0.057 0.943 28 H 0.077 0.923 29 H 0.077 0.923 30 H 0.070 0.930 31 H 0.083 0.917 32 H 0.055 0.945 33 H 0.076 0.924 34 H 0.021 0.979 35 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.547 5.329 16.820 17.711 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.067 3.933 3 H 0.013 0.987 4 C -0.538 4.538 5 H 0.050 0.950 6 C -0.183 4.183 7 N -0.587 5.587 8 Si 0.760 3.240 9 H -0.197 1.197 10 H -0.208 1.208 11 H -0.172 1.172 12 N -0.257 5.257 13 C -0.080 4.080 14 C -0.150 4.150 15 H 0.074 0.926 16 C -0.134 4.134 17 C -0.152 4.152 18 C -0.145 4.145 19 C -0.133 4.133 20 H 0.099 0.901 21 C -0.051 4.051 22 H 0.077 0.923 23 H 0.059 0.941 24 H 0.064 0.936 25 H 0.075 0.925 26 H 0.101 0.899 27 H 0.075 0.925 28 H 0.096 0.904 29 H 0.096 0.904 30 H 0.089 0.911 31 H 0.101 0.899 32 H 0.074 0.926 33 H 0.094 0.906 34 H 0.040 0.960 35 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 1.374 4.830 16.589 17.332 hybrid contribution 0.412 1.245 -1.069 1.691 sum 1.786 6.075 15.520 16.762 Atomic orbital electron populations 1.21894 0.96143 1.00860 0.99809 1.19761 0.93520 0.91212 0.88789 0.98700 1.21063 1.42577 0.93937 0.96238 0.95015 1.25823 0.94526 1.03079 0.94870 1.70037 1.48345 1.37721 1.02569 0.85917 0.79694 0.80717 0.77698 1.19729 1.20822 1.17176 1.65185 1.07464 1.51263 1.01800 1.22275 0.96433 0.97481 0.91802 1.22635 0.96207 0.97835 0.98357 0.92554 1.21855 0.96192 1.02740 0.92573 1.22989 0.94491 1.00937 0.96775 1.21621 0.95729 1.00124 0.97052 1.22279 0.97560 0.99246 0.94225 0.90097 1.21954 0.88617 0.99196 0.95366 0.92316 0.94066 0.93552 0.92500 0.89900 0.92454 0.90391 0.90446 0.91072 0.89866 0.92643 0.90563 0.96043 0.93040 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.55 9.13 71.98 0.66 -4.90 16 2 C 0.18 8.48 1.41 44.17 0.06 8.54 16 3 H 0.00 -0.22 5.26 -2.39 -0.01 -0.23 16 4 C -0.50 -29.31 8.26 25.60 0.21 -29.10 16 5 H 0.03 2.11 8.06 -2.91 -0.02 2.09 16 6 C 0.01 0.85 5.47 84.66 0.46 1.32 16 7 N -0.95 -59.98 13.96 21.45 0.30 -59.68 16 8 Si 0.94 45.09 26.98 68.60 1.85 46.94 16 9 H -0.27 -12.75 7.11 99.48 0.71 -12.04 16 10 H -0.28 -13.29 7.11 99.48 0.71 -12.58 16 11 H -0.25 -11.12 6.83 99.48 0.68 -10.44 16 12 N -0.53 -22.88 5.14 -867.61 -4.46 -27.34 16 13 C 0.05 1.56 6.08 84.97 0.52 2.08 16 14 C -0.13 -3.74 2.82 -10.28 -0.03 -3.77 16 15 H 0.06 1.76 8.14 -2.38 -0.02 1.74 16 16 C -0.10 -1.96 6.69 31.27 0.21 -1.75 16 17 C -0.11 -2.16 6.96 32.90 0.23 -1.93 16 18 C -0.11 -2.60 6.70 30.88 0.21 -2.39 16 19 C -0.11 -3.49 2.84 -10.38 -0.03 -3.52 16 20 H 0.08 2.43 8.13 -2.39 -0.02 2.41 16 21 C 0.08 3.15 5.70 85.01 0.48 3.63 16 22 H 0.06 2.11 6.20 -2.39 -0.01 2.10 16 23 H 0.04 1.77 8.14 -2.39 -0.02 1.75 16 24 H 0.05 2.03 8.14 -2.39 -0.02 2.01 16 25 H 0.27 15.76 8.31 -92.72 -0.77 14.98 16 26 H 0.08 2.49 8.14 -2.39 -0.02 2.47 16 27 H 0.06 1.88 6.10 -2.39 -0.01 1.86 16 28 H 0.08 1.48 8.14 -2.39 -0.02 1.46 16 29 H 0.08 1.37 8.14 -2.39 -0.02 1.35 16 30 H 0.07 1.23 8.14 -2.39 -0.02 1.21 16 31 H 0.08 1.26 8.14 -2.39 -0.02 1.24 16 32 H 0.05 1.43 8.14 -2.38 -0.02 1.41 16 33 H 0.08 1.64 8.14 -2.39 -0.02 1.62 16 34 H 0.02 0.96 7.86 -2.38 -0.02 0.94 16 35 H 0.05 2.31 8.14 -2.39 -0.02 2.29 16 Total: -1.00 -65.88 268.65 1.68 -64.20 By element: Atomic # 1 Polarization: 6.66 SS G_CDS: 1.01 Total: 7.66 kcal Atomic # 6 Polarization: -34.76 SS G_CDS: 2.98 Total: -31.78 kcal Atomic # 7 Polarization: -82.87 SS G_CDS: -4.16 Total: -87.02 kcal Atomic # 14 Polarization: 45.09 SS G_CDS: 1.85 Total: 46.94 kcal Total: -65.88 1.68 -64.20 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000132010818.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.329 kcal (2) G-P(sol) polarization free energy of solvation -65.877 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.547 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.679 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.197 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.868 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds